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KJC3_008468-T1, KJC3_008468-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008468-T1
Unique NameKJC3_008468-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2152117..2153541+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008468-T1 ID=KJC3_008468-T1|Name=KJC3_008468-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1425bp|location=Sequence derived from alignment at ch6:2152117..2153541+ (Aspergillus niger KJC3)
CTTCCCTGCCCATGATCTTGTCTCCCGAACACCTGGGTCCAGGCCAGACG
TCGTCATATCATTGAGTTTGGTCGATTAATCATCCCGCCGGCCTTTTGCT
TCATCCCTCTGTCGGATTTGTTGCTCTCCGGATCTGTTCTTTCCTCCCCG
CTGATTCTGCACGGCCTTCTGGCTGCCGCGTCCAGCTCACGATGGGCAAA
TATAACCTCACGGCCCTCCGGGTTCGCCAAATCGCTGTGGCACAGCAATC
CGCCGGCAAACTTCGTCAAACACCCAAATGGCTTGATATAATGCACGATG
TCCCCCCCACTGAGGTCCTGGTGCGGAACCGACCTCAACAACACCAATTG
GTTCGCCAGCGCCTGAAGACTGTTCCTGGCGCATCGAGGCCGCAGGCCGT
CTTCGAAGTCCAGGAGAAACGCATCAAGCCGAAGAAGGCAAGCCGCATGT
TCCAGCCTGTCGAAATCAAATACGAGGAGGATCAACTGCGCAAGGAATTT
TTCCGCGACCATCCTTGGGAGCTTGCCCGACCCCGTGTGCTTGTCGAAAA
GTCCGGCAAGGACTTTGAGAGATATAACTGGAGCCGGCTCCAGCAGCGGG
GAAAGCACTTGGATGGTGAGAGGTATGTCTAGTGTCCTCGATCTGTAGGC
GGGAGGATCTCGCCAATAATTAGATATTTGATGCTAACTCCCCCGGTTTC
CGGTGAAATAGCGTTGTTCAGCGACAGCTTTGGCTCCTTAATAATGTCCC
CGATATGACCAAGAGCGCCGCTTACGATATTGCACGCCGCGAGTTCTACC
GCCTCCGTCTACAGGAAGACATTGAACGACGTGTTGCTGCTGAGGAAGCC
GAAGCTACTGGTGCTGTGTTCGGACCGACACGTCTACAGATCGGTATGGA
CCTCGAGAACAAGGAGTATGAGCGTTGGAAGGAATGGGCCAAGTTGCAGG
CCCAGCTTTCGGACCAGAGAATGGCTGCGTTCCTTGGGGCTCCGGAAGTC
CAAGCTGCTGAGGAGCAAGAGACGAGCTTGGATGATGACGCCACGGAAAA
GGTTGCGGTAGCAGCCTGAAGGCGGGAGTTGTTACTTTTTGAGGGTTTTA
GTATTGTCAACCCCCGGATGAGGCGGGTTTTGCCAGACTCTCTAATGGCT
TATGTACACTACTGGACTGTCGATATGTTTTCTTTTCTTCTCGAGTCGCT
CTGTTTTACTTTTATGCTTTTCTCTATATCCTTTCTTGCTGTGAATAAGA
GTTTTGGGTCACGTATAAATTGTCCTTTTCAGCTGTGTTGGTCAGGCCAA
GTGGACAAGGGCGGGGTGCACGCATGGATAGCAGGCAGTAGAGCTAACAT
ATCGACTATACACCTCTAGCCGAAGAGTGATTTGGAACCACAAAACAGCG
CTGTGAGGCAATGACCATCTGGAAC
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Coding sequence (CDS) from alignment at ch6:2152117..2153541+

>KJC3_008468-T1 ID=KJC3_008468-T1|Name=KJC3_008468-T1|organism=Aspergillus niger KJC3|type=CDS|length=1578bp|location=Sequence derived from alignment at ch6:2152117..2153541+ (Aspergillus niger KJC3)
ATGGGCAAATATAACCTCACGGCCCTCCGGGTTCGCCAAATCGCTGTGGC
ACAGCAATCCGCCGGCAAACTTCGTCAAACACCCAAATGGCTTGATATAA
TGCACGATGTCCCCCCCACTGAGGTCCTGGTGCGGAACCGACCTCAACAA
CACCAATTGGTTCGCCAGCGCCTGAAGACTGTTCCTGGCGCATCGAGGCC
GCAGGCCGTCTTCGAAGTCCAGGAGAAACGCATCAAGCCGAAGAAGGCAA
GCCGCATGTTCCAGCCTGTCGAAATCAAATACGAGGAGGATCAACTGCGC
AAGGAATTTTTCCGCGACCATCCTTGGGAGCTTGCCCGACCCCGTGTGCT
TGTCGAAAAGTCCGGCAAGGACTTTGAGAGATATAACTGGAGCCGGCTCC
AGCAGCGGGGAAAGCACTTGGATGGTGAGAGCGTTGTTCAGCGACAGCTT
TGGCTCCTTAATAATGTCCCCGATATGACCAAGAGCGCCGCTTACGATAT
TGCACGCCGCGAGTTCTACCGCCTCCGTCTACAGGAAGACATTGAACGAC
GTGTTGCTGCTGAGGAAGCCGAAGCTACTGGTGCTGTGTTCGGACCGACA
CGTCTACAGATCGGTATGGACCTCGAGAACAAGGAGTATGAGCGTTGGAA
GGAATGGGCCAAGTTGCAGGCCCAGCTTTCGGACCAGAGAATGGCTGCGT
TCCTTGGGGCTCCGGAAGTCCAAGCTGCTGAGGAGCAAGAGACGAGCTTG
GATGATGACGCCACGGAAAAGGTTGCGGTAGCAGCCTGAATGGGCAAATA
TAACCTCACGGCCCTCCGGGTTCGCCAAATCGCTGTGGCACAGCAATCCG
CCGGCAAACTTCGTCAAACACCCAAATGGCTTGATATAATGCACGATGTC
CCCCCCACTGAGGTCCTGGTGCGGAACCGACCTCAACAACACCAATTGGT
TCGCCAGCGCCTGAAGACTGTTCCTGGCGCATCGAGGCCGCAGGCCGTCT
TCGAAGTCCAGGAGAAACGCATCAAGCCGAAGAAGGCAAGCCGCATGTTC
CAGCCTGTCGAAATCAAATACGAGGAGGATCAACTGCGCAAGGAATTTTT
CCGCGACCATCCTTGGGAGCTTGCCCGACCCCGTGTGCTTGTCGAAAAGT
CCGGCAAGGACTTTGAGAGATATAACTGGAGCCGGCTCCAGCAGCGGGGA
AAGCACTTGGATGGTGAGAGCGTTGTTCAGCGACAGCTTTGGCTCCTTAA
TAATGTCCCCGATATGACCAAGAGCGCCGCTTACGATATTGCACGCCGCG
AGTTCTACCGCCTCCGTCTACAGGAAGACATTGAACGACGTGTTGCTGCT
GAGGAAGCCGAAGCTACTGGTGCTGTGTTCGGACCGACACGTCTACAGAT
CGGTATGGACCTCGAGAACAAGGAGTATGAGCGTTGGAAGGAATGGGCCA
AGTTGCAGGCCCAGCTTTCGGACCAGAGAATGGCTGCGTTCCTTGGGGCT
CCGGAAGTCCAAGCTGCTGAGGAGCAAGAGACGAGCTTGGATGATGACGC
CACGGAAAAGGTTGCGGTAGCAGCCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005763mitochondrial small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RSM25KJC3_008468Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008468-T1.utr5p1KJC3_008468-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008468-T1.exon1KJC3_008468-T1.exon1Aspergillus niger KJC3exon
KJC3_008468-T1.exon2KJC3_008468-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008468-T1.cdsKJC3_008468-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008468-T1.utr3p1KJC3_008468-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008468-T1KJC3_008468-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264X41
DBxrefInterPro:IPR016939
DBxrefPFAM:PF13741
Productmitochondrial ribosomal small subunit component
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2152117..2153541 +
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