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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2189547..2191729- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008481-T1 ID=KJC3_008481-T1|Name=KJC3_008481-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2183bp|location=Sequence derived from alignment at ch6:2189547..2191729- (Aspergillus niger KJC3)
TCTCCTCCCCTCTTCCTCTCTTGCTCCTCGATTATTCTCATTGCTGCATT
GCTATATTGCTGTTGATTCCGTCGAGACACCAAATACATTTCGTCTCATT
ACACTTGGAAATCGCTCAGCCCGGAAACCTCCTCAGGTGCCTCCGCCATG
GCCGCCGCCGATGTTCGCGACATGCTGGATCTGCCCGCGGAGGGCCAGCC
CCGACCTCATAAGAAACAGAAGGTCGTCGAGAAGCGTCCAGGTGGGCTTC
TCTCAGTTCCCTTACTCACCTAAAATTAATCTGACACATTCCCATCGCTA
GAGGGTATCACCCGTGAGCTCTATGCTCTGCTAGGCGAACGAGCGCCCCC
GATCGCCATCAACGAGAACCGATACAAGGGACGTCCGAAATGGACGAGCA
AAAAGCGCGTACAGCCATGGTACGCACACATCACCATATCAACTGCTCTC
CGATTCCAAATACTGACTCCATCAGGCGCATGACCCCCTTCATAAACAGC
GCCCGCTCCGATGGCCTCGTTCTCCGCCACTGGCAACGCCAGCATGAATC
CGCCAAGGTCCCCGCGCTGGAGGGCTCCGAGATGGACGTGGACGAGAAAG
AGGACAACGCCGATGCCTCAACCTCCGATAACGTGCCGCAGCAAGACTCC
CTATTCGCCAAATACAACATCAAAGCCCGCGTACCCAACCGCTACACAGA
CGAGGAATACAATCGCCATCTCAAGAACGACGACTGGACGCGCCAGGAAA
CCGACTACCTCATGGACCTAGTCGAAGAATACGACCTCCGCTGGGTCGTA
ATCGCCGATCGCTACGACTATCAACCGCACCCCGTCGATGGCGACAGCAA
CAACGCCAGCGCCCTCGTCCCCGCAAAGCAATACCGAACCATGGAGCAGA
TGAAATCGCGCTACTACTTCATCGCCGCGAGCATGCTCGCACTCGAGCAC
CCACCCTCCGAGATGTCGGAAGCCGAATTTGAACTGCACGAAAAGATGCT
CAAATTCGACGCCGACCGTGAACGCTCCCGCAAAGAACTCGCCGCCCTCC
AACTCAACCGCACAGCCGACGAAGTCCGCGAAGAAAGCGTCCTCCTCGAA
GAACTCAAACGCATCACCGCCAACGAGCAAGATTTCATCACGGAACGTCG
CGAACTCTACTCCCGCCTTGAAGTCCCTATCAGCGTCGGCAACACAACCA
TGTACCAATCCAGCCAAGGCCTCTCGCAACTCCTCCAAACCCTCCTCCAA
GCCGACAAGAGCAAGAAACGCCGCTCCATCCTGGGCCCCGAAGGCGGTGC
CGCTCCCAGCCCCGCCGGCGCAACCCCGGCCCCCAACGCCCCCAGCAGCG
CCCGCGACAGCCGCGCCGACACCCCCAACGCGACGCCCGCCGCCGCCCCA
ACCAACAAAAAGGCCGCCGCGGCAGCCGCAGCCGCAGCCGCAGCAGCGAA
CAAAGAAGCGCAACAACAAGCCGTCCGGACCCTCACACCCGCCGAAGAAG
CCAAATACGGCGTGCAGCACCACGACCGACTGGCGCCGGGCGTGCAATTC
CGCAGTGACCGCGCGCAGAAGCTCACACAGGCGAAATCGAACGTGCAGAC
GCAGAAACTCGCTGCTGCGCTGGCGGAACTGGAGGTGCCGCTGCGGCTTG
TCATGCCGACGGAGCGTGTCTGCAAGGATTTTGAGAAGCTGATTCATTCG
GTGAATCTGCTGCTGGAGGCGCGGAAGGTGTCGGAGAAGGTGGAGAGTGA
GATTCGGGTTTTGGAGGCTGCGAAGGAGGAACGTGAGAAGAAGGCGAAGG
AGGCGCTGGAGAAGGATAGTAAGCCTGAGGTCAAATCGGAGCAGCAGGAG
GATCAGCCACTTCCTGCGGCGGCGGAGGAGGAGGAGGAGGCTGCGGGTGC
TGGGGATGCGGAGGGGCAGGAGAAGGGTGCGACAGATAAATCGGGAGAGA
AGGCAGAAGGTGGTGCTGCTGGTGAAGAGGGAGATGTGACTTCGCATAAA
CGCTCTGCTAGTGTTCTGAGCAATGCTAGTGATAAGAGTACGAAGCGGCA
AAGGAAGTAAAAGAGGATAGATGTTATGGGCGTTGGAGAATGGGCGGCGT
TCTTGGTGTTTAGATATACCTATGTACGACTACATGAAGCTTTGGCCTTG
ATAATCACTGGCTTTAATGCATTTACTTTACCG back to topCoding sequence (CDS) from alignment at ch6:2189547..2191729- >KJC3_008481-T1 ID=KJC3_008481-T1|Name=KJC3_008481-T1|organism=Aspergillus niger KJC3|type=CDS|length=5391bp|location=Sequence derived from alignment at ch6:2189547..2191729- (Aspergillus niger KJC3)
GCGCATGACCCCCTTCATAAACAGCGCCCGCTCCGATGGCCTCGTTCTCC
GCCACTGGCAACGCCAGCATGAATCCGCCAAGGTCCCCGCGCTGGAGGGC
TCCGAGATGGACGTGGACGAGAAAGAGGACAACGCCGATGCCTCAACCTC
CGATAACGTGCCGCAGCAAGACTCCCTATTCGCCAAATACAACATCAAAG
CCCGCGTACCCAACCGCTACACAGACGAGGAATACAATCGCCATCTCAAG
AACGACGACTGGACGCGCCAGGAAACCGACTACCTCATGGACCTAGTCGA
AGAATACGACCTCCGCTGGGTCGTAATCGCCGATCGCTACGACTATCAAC
CGCACCCCGTCGATGGCGACAGCAACAACGCCAGCGCCCTCGTCCCCGCA
AAGCAATACCGAACCATGGAGCAGATGAAATCGCGCTACTACTTCATCGC
CGCGAGCATGCTCGCACTCGAGCACCCACCCTCCGAGATGTCGGAAGCCG
AATTTGAACTGCACGAAAAGATGCTCAAATTCGACGCCGACCGTGAACGC
TCCCGCAAAGAACTCGCCGCCCTCCAACTCAACCGCACAGCCGACGAAGT
CCGCGAAGAAAGCGTCCTCCTCGAAGAACTCAAACGCATCACCGCCAACG
AGCAAGATTTCATCACGGAACGTCGCGAACTCTACTCCCGCCTTGAAGTC
CCTATCAGCGTCGGCAACACAACCATGTACCAATCCAGCCAAGGCCTCTC
GCAACTCCTCCAAACCCTCCTCCAAGCCGACAAGAGCAAGAAACGCCGCT
CCATCCTGGGCCCCGAAGGCGGTGCCGCTCCCAGCCCCGCCGGCGCAACC
CCGGCCCCCAACGCCCCCAGCAGCGCCCGCGACAGCCGCGCCGACACCCC
CAACGCGACGCCCGCCGCCGCCCCAACCAACAAAAAGGCCGCCGCGGCAG
CCGCAGCCGCAGCCGCAGCAGCGAACAAAGAAGCGCAACAACAAGCCGTC
CGGACCCTCACACCCGCCGAAGAAGCCAAATACGGCGTGCAGCACCACGA
CCGACTGGCGCCGGGCGTGCAATTCCGCAGTGACCGCGCGCAGAAGCTCA
CACAGGCGAAATCGAACGTGCAGACGCAGAAACTCGCTGCTGCGCTGGCG
GAACTGGAGGTGCCGCTGCGGCTTGTCATGCCGACGGAGCGTGTCTGCAA
GGATTTTGAGAAGCTGATTCATTCGGTGAATCTGCTGCTGGAGGCGCGGA
AGGTGTCGGAGAAGGTGGAGAGTGAGATTCGGGTTTTGGAGGCTGCGAAG
GAGGAACGTGAGAAGAAGGCGAAGGAGGCGCTGGAGAAGGATAGTAAGCC
TGAGGTCAAATCGGAGCAGCAGGAGGATCAGCCACTTCCTGCGGCGGCGG
AGGAGGAGGAGGAGGCTGCGGGTGCTGGGGATGCGGAGGGGCAGGAGAAG
GGTGCGACAGATAAATCGGGAGAGAAGGCAGAAGGTGGTGCTGCTGGTGA
AGAGGGAGATGTGACTTCGCATAAACGCTCTGCTAGTGTTCTGAGCAATG
CTAGTGATAAGAGTACGAAGCGGCAAAGGAAGTAAAGGGTATCACCCGTG
AGCTCTATGCTCTGCTAGGCGAACGAGCGCCCCCGATCGCCATCAACGAG
AACCGATACAAGGGACGTCCGAAATGGACGAGCAAAAAGCGCGTACAGCC
ATGATGGCCGCCGCCGATGTTCGCGACATGCTGGATCTGCCCGCGGAGGG
CCAGCCCCGACCTCATAAGAAACAGAAGGTCGTCGAGAAGCGTCCAGGCG
CATGACCCCCTTCATAAACAGCGCCCGCTCCGATGGCCTCGTTCTCCGCC
ACTGGCAACGCCAGCATGAATCCGCCAAGGTCCCCGCGCTGGAGGGCTCC
GAGATGGACGTGGACGAGAAAGAGGACAACGCCGATGCCTCAACCTCCGA
TAACGTGCCGCAGCAAGACTCCCTATTCGCCAAATACAACATCAAAGCCC
GCGTACCCAACCGCTACACAGACGAGGAATACAATCGCCATCTCAAGAAC
GACGACTGGACGCGCCAGGAAACCGACTACCTCATGGACCTAGTCGAAGA
ATACGACCTCCGCTGGGTCGTAATCGCCGATCGCTACGACTATCAACCGC
ACCCCGTCGATGGCGACAGCAACAACGCCAGCGCCCTCGTCCCCGCAAAG
CAATACCGAACCATGGAGCAGATGAAATCGCGCTACTACTTCATCGCCGC
GAGCATGCTCGCACTCGAGCACCCACCCTCCGAGATGTCGGAAGCCGAAT
TTGAACTGCACGAAAAGATGCTCAAATTCGACGCCGACCGTGAACGCTCC
CGCAAAGAACTCGCCGCCCTCCAACTCAACCGCACAGCCGACGAAGTCCG
CGAAGAAAGCGTCCTCCTCGAAGAACTCAAACGCATCACCGCCAACGAGC
AAGATTTCATCACGGAACGTCGCGAACTCTACTCCCGCCTTGAAGTCCCT
ATCAGCGTCGGCAACACAACCATGTACCAATCCAGCCAAGGCCTCTCGCA
ACTCCTCCAAACCCTCCTCCAAGCCGACAAGAGCAAGAAACGCCGCTCCA
TCCTGGGCCCCGAAGGCGGTGCCGCTCCCAGCCCCGCCGGCGCAACCCCG
GCCCCCAACGCCCCCAGCAGCGCCCGCGACAGCCGCGCCGACACCCCCAA
CGCGACGCCCGCCGCCGCCCCAACCAACAAAAAGGCCGCCGCGGCAGCCG
CAGCCGCAGCCGCAGCAGCGAACAAAGAAGCGCAACAACAAGCCGTCCGG
ACCCTCACACCCGCCGAAGAAGCCAAATACGGCGTGCAGCACCACGACCG
ACTGGCGCCGGGCGTGCAATTCCGCAGTGACCGCGCGCAGAAGCTCACAC
AGGCGAAATCGAACGTGCAGACGCAGAAACTCGCTGCTGCGCTGGCGGAA
CTGGAGGTGCCGCTGCGGCTTGTCATGCCGACGGAGCGTGTCTGCAAGGA
TTTTGAGAAGCTGATTCATTCGGTGAATCTGCTGCTGGAGGCGCGGAAGG
TGTCGGAGAAGGTGGAGAGTGAGATTCGGGTTTTGGAGGCTGCGAAGGAG
GAACGTGAGAAGAAGGCGAAGGAGGCGCTGGAGAAGGATAGTAAGCCTGA
GGTCAAATCGGAGCAGCAGGAGGATCAGCCACTTCCTGCGGCGGCGGAGG
AGGAGGAGGAGGCTGCGGGTGCTGGGGATGCGGAGGGGCAGGAGAAGGGT
GCGACAGATAAATCGGGAGAGAAGGCAGAAGGTGGTGCTGCTGGTGAAGA
GGGAGATGTGACTTCGCATAAACGCTCTGCTAGTGTTCTGAGCAATGCTA
GTGATAAGAGTACGAAGCGGCAAAGGAAGTAAAGGGTATCACCCGTGAGC
TCTATGCTCTGCTAGGCGAACGAGCGCCCCCGATCGCCATCAACGAGAAC
CGATACAAGGGACGTCCGAAATGGACGAGCAAAAAGCGCGTACAGCCATG
ATGGCCGCCGCCGATGTTCGCGACATGCTGGATCTGCCCGCGGAGGGCCA
GCCCCGACCTCATAAGAAACAGAAGGTCGTCGAGAAGCGTCCAGGCGCAT
GACCCCCTTCATAAACAGCGCCCGCTCCGATGGCCTCGTTCTCCGCCACT
GGCAACGCCAGCATGAATCCGCCAAGGTCCCCGCGCTGGAGGGCTCCGAG
ATGGACGTGGACGAGAAAGAGGACAACGCCGATGCCTCAACCTCCGATAA
CGTGCCGCAGCAAGACTCCCTATTCGCCAAATACAACATCAAAGCCCGCG
TACCCAACCGCTACACAGACGAGGAATACAATCGCCATCTCAAGAACGAC
GACTGGACGCGCCAGGAAACCGACTACCTCATGGACCTAGTCGAAGAATA
CGACCTCCGCTGGGTCGTAATCGCCGATCGCTACGACTATCAACCGCACC
CCGTCGATGGCGACAGCAACAACGCCAGCGCCCTCGTCCCCGCAAAGCAA
TACCGAACCATGGAGCAGATGAAATCGCGCTACTACTTCATCGCCGCGAG
CATGCTCGCACTCGAGCACCCACCCTCCGAGATGTCGGAAGCCGAATTTG
AACTGCACGAAAAGATGCTCAAATTCGACGCCGACCGTGAACGCTCCCGC
AAAGAACTCGCCGCCCTCCAACTCAACCGCACAGCCGACGAAGTCCGCGA
AGAAAGCGTCCTCCTCGAAGAACTCAAACGCATCACCGCCAACGAGCAAG
ATTTCATCACGGAACGTCGCGAACTCTACTCCCGCCTTGAAGTCCCTATC
AGCGTCGGCAACACAACCATGTACCAATCCAGCCAAGGCCTCTCGCAACT
CCTCCAAACCCTCCTCCAAGCCGACAAGAGCAAGAAACGCCGCTCCATCC
TGGGCCCCGAAGGCGGTGCCGCTCCCAGCCCCGCCGGCGCAACCCCGGCC
CCCAACGCCCCCAGCAGCGCCCGCGACAGCCGCGCCGACACCCCCAACGC
GACGCCCGCCGCCGCCCCAACCAACAAAAAGGCCGCCGCGGCAGCCGCAG
CCGCAGCCGCAGCAGCGAACAAAGAAGCGCAACAACAAGCCGTCCGGACC
CTCACACCCGCCGAAGAAGCCAAATACGGCGTGCAGCACCACGACCGACT
GGCGCCGGGCGTGCAATTCCGCAGTGACCGCGCGCAGAAGCTCACACAGG
CGAAATCGAACGTGCAGACGCAGAAACTCGCTGCTGCGCTGGCGGAACTG
GAGGTGCCGCTGCGGCTTGTCATGCCGACGGAGCGTGTCTGCAAGGATTT
TGAGAAGCTGATTCATTCGGTGAATCTGCTGCTGGAGGCGCGGAAGGTGT
CGGAGAAGGTGGAGAGTGAGATTCGGGTTTTGGAGGCTGCGAAGGAGGAA
CGTGAGAAGAAGGCGAAGGAGGCGCTGGAGAAGGATAGTAAGCCTGAGGT
CAAATCGGAGCAGCAGGAGGATCAGCCACTTCCTGCGGCGGCGGAGGAGG
AGGAGGAGGCTGCGGGTGCTGGGGATGCGGAGGGGCAGGAGAAGGGTGCG
ACAGATAAATCGGGAGAGAAGGCAGAAGGTGGTGCTGCTGGTGAAGAGGG
AGATGTGACTTCGCATAAACGCTCTGCTAGTGTTCTGAGCAATGCTAGTG
ATAAGAGTACGAAGCGGCAAAGGAAGTAAAGGGTATCACCCGTGAGCTCT
ATGCTCTGCTAGGCGAACGAGCGCCCCCGATCGCCATCAACGAGAACCGA
TACAAGGGACGTCCGAAATGGACGAGCAAAAAGCGCGTACAGCCATGATG
GCCGCCGCCGATGTTCGCGACATGCTGGATCTGCCCGCGGAGGGCCAGCC
CCGACCTCATAAGAAACAGAAGGTCGTCGAGAAGCGTCCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045892 | negative regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008481-T1.utr3p1 | KJC3_008481-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008481-T1.utr5p1 | KJC3_008481-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262OLP |
| DBxref | InterPro:IPR017877 |
| DBxref | InterPro:IPR008468 |
| DBxref | InterPro:IPR032563 |
| DBxref | PFAM:PF16282 |
| DBxref | PFAM:PF05499 |
| Product | swr complex subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2189547..2191729 - |
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