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KJC3_008509-T1, KJC3_008509-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008509-T1
Unique NameKJC3_008509-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2258848..2260630+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008509-T1 ID=KJC3_008509-T1|Name=KJC3_008509-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1783bp|location=Sequence derived from alignment at ch6:2258848..2260630+ (Aspergillus niger KJC3)
CTTTGAAGTGCTTTTGATCGCGCCTTTCATATCACCCATATTTTCTTTCA
CTGCCATTATGAACGGCGTTCAGGATTCAACCTCTGCTGCGGCCTCGTCC
CAGTCTGCGCAGAGGCAGGTGCGCGTGCAGCTCGTTAGCAAGCAAGAAGA
CATTGCGCTGCCTGAGAGCACCGGCCCCATTCTGGTTCCCACAGGTACGA
ATGCATTTTGGCAACTTACTGCTAGTCTGCTTTGTATATACTTGTGTGCT
CACTGATTTTTGTAATATTCTGTAGGATTGCGGAGATATGCACTTTCTAC
CCTGGTGAATAATCTCTTGGGAAACGACAAGCCGGTGCCATTTGAGTTTT
TGATCAATGGCGCATTCCTTCGGACTTCGATCGATGAATACTTGACGGCC
AATGGCATATCTGCGGAAACCACTCTGGAAATTGAGTACATAAGAGCGTT
GATTCCCCCGCTCCATATTGCCTCCTTCGAGCATGATGACTGGGTTGGCT
CTGTGGATGTCCTCTCTGCGACCTCGCCTGCTACCTCTTGGGCTTCTGCG
GTCGTCTCTCCAGGCCAGGAGAGAATCCTATCGGGAAGCTATGACGGATT
GCTTCGTGTGTGGAATATGTCCTCCCAGATCATCGCAACCTCACCGTCCC
CGGCTGATGGAGGGCACGGTGCGTCCATCAAAGCCGCTAAGTTCATCTCG
CCGAATTCGATTGTGTCGGCTGGCCTTGATCGCACCGTTCGACTCTGGAA
GTACAATGAAAGCGATGATGGATTCTCAGGAAAGATCACTCCGCAGATTG
AGCTCTACGGACACAAATCTGGTATCAACTCGTTGGCTGTGCATGCCCCC
TCGAACCGTATTCTCTCCGCCTCGTCAGACCACAGCATTGGCTTCTGGTC
GACAAAGAAGTCAGATGCCCCAGCTGCCCCCGAGAATCTGGTTCCATCTG
CTGCGTCACGGAGCTCGAAGCGCAGAAAGGTGAGCTCGTCCGTCAGCATC
CCGCAGCGTGGCCCGCTTGCGCTGTTGTCTTCCCACACTGCGCCAGTGTC
AGCTGCCATGTTTGACACAAACGACTCGACTGTCGGCTATTCTACTTCGT
GGGATCACTCTCTGCGTACATGGGATCTGGTCACGGCCGCTTTAGTAGAC
ACCAGATCGACATCCCATTCGTTGCTATCTCTCGAGCATCTCCCCGAGCA
CCACCTTCTTGCGACAGGAACTTCCGCTCGCCACATCACTCTCATCGATC
CTCGTACATCAGCGACAACCATCTCCGCCATGACCCTCAGAGGTCACACC
AATGCCGTGGTTTCGCTGTCCCGCGATCCCCACAGCAGCTACGGTCTCAT
CAGTGGTAGTCACGACGGTACATGTCGAATCTGGGATATCCGTGCTACGA
AGACGGACAAGGACGGTGTTGTTGGTGAGAGCGTGTATTCGATTACTCGG
AGAAGCTTGGAAGAGCAAGGTAAAGCGGATGCTAAGCGAGTAGGTGGAGA
GGGAGTCAAGGTCTTCAGTGTGTGCTGGGACCGCTCGGTTGGCATTGTCA
GCGCCGGTGAGGATAAGAGGATTCAGATCAACCGGGGTGAAGGCGTCTTG
TCTTCCGTATAAGAGGAGTTGCACACATGGTTCTGGCGTTATAACTATAG
GATGAAAAGTTTGGTTCTGAGTATTTGTATTAAAACAAGCCACTGTACGA
GCTGATGTTTCCACTTGCAATATATCCTATAATTGCTTTAGAGAGAGGCA
ACATTGAATCACTACTATGATTTCCTTGATTTC
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Coding sequence (CDS) from alignment at ch6:2258848..2260630+

>KJC3_008509-T1 ID=KJC3_008509-T1|Name=KJC3_008509-T1|organism=Aspergillus niger KJC3|type=CDS|length=2946bp|location=Sequence derived from alignment at ch6:2258848..2260630+ (Aspergillus niger KJC3)
ATGAACGGCGTTCAGGATTCAACCTCTGCTGCGGCCTCGTCCCAGTCTGC
GCAGAGGCAGGTGCGCGTGCAGCTCGTTAGCAAGCAAGAAGACATTGCGC
TGCCTGAGAGCACCGGCCCCATTCTGGTTCCCACAGGATTGCGGAGATAT
GCACTTTCTACCCTGGTGAATAATCTCTTGGGAAACGACAAGCCGGTGCC
ATTTGAGTTTTTGATCAATGGCGCATTCCTTCGGACTTCGATCGATGAAT
ACTTGACGGCCAATGGCATATCTGCGGAAACCACTCTGGAAATTGAGTAC
ATAAGAGCGTTGATTCCCCCGCTCCATATTGCCTCCTTCGAGCATGATGA
CTGGGTTGGCTCTGTGGATGTCCTCTCTGCGACCTCGCCTGCTACCTCTT
GGGCTTCTGCGGTCGTCTCTCCAGGCCAGGAGAGAATCCTATCGGGAAGC
TATGACGGATTGCTTCGTGTGTGGAATATGTCCTCCCAGATCATCGCAAC
CTCACCGTCCCCGGCTGATGGAGGGCACGGTGCGTCCATCAAAGCCGCTA
AGTTCATCTCGCCGAATTCGATTGTGTCGGCTGGCCTTGATCGCACCGTT
CGACTCTGGAAGTACAATGAAAGCGATGATGGATTCTCAGGAAAGATCAC
TCCGCAGATTGAGCTCTACGGACACAAATCTGGTATCAACTCGTTGGCTG
TGCATGCCCCCTCGAACCGTATTCTCTCCGCCTCGTCAGACCACAGCATT
GGCTTCTGGTCGACAAAGAAGTCAGATGCCCCAGCTGCCCCCGAGAATCT
GGTTCCATCTGCTGCGTCACGGAGCTCGAAGCGCAGAAAGGTGAGCTCGT
CCGTCAGCATCCCGCAGCGTGGCCCGCTTGCGCTGTTGTCTTCCCACACT
GCGCCAGTGTCAGCTGCCATGTTTGACACAAACGACTCGACTGTCGGCTA
TTCTACTTCGTGGGATCACTCTCTGCGTACATGGGATCTGGTCACGGCCG
CTTTAGTAGACACCAGATCGACATCCCATTCGTTGCTATCTCTCGAGCAT
CTCCCCGAGCACCACCTTCTTGCGACAGGAACTTCCGCTCGCCACATCAC
TCTCATCGATCCTCGTACATCAGCGACAACCATCTCCGCCATGACCCTCA
GAGGTCACACCAATGCCGTGGTTTCGCTGTCCCGCGATCCCCACAGCAGC
TACGGTCTCATCAGTGGTAGTCACGACGGTACATGTCGAATCTGGGATAT
CCGTGCTACGAAGACGGACAAGGACGGTGTTGTTGGTGAGAGCGTGTATT
CGATTACTCGGAGAAGCTTGGAAGAGCAAGGTAAAGCGGATGCTAAGCGA
GTAGGTGGAGAGGGAGTCAAGGTCTTCAGTGTGTGCTGGGACCGCTCGGT
TGGCATTGTCAGCGCCGGTGAGGATAAGAGGATTCAGATCAACCGGGGTG
AAGGCGTCTTGTCTTCCGTATAAATGAACGGCGTTCAGGATTCAACCTCT
GCTGCGGCCTCGTCCCAGTCTGCGCAGAGGCAGGTGCGCGTGCAGCTCGT
TAGCAAGCAAGAAGACATTGCGCTGCCTGAGAGCACCGGCCCCATTCTGG
TTCCCACAGGATTGCGGAGATATGCACTTTCTACCCTGGTGAATAATCTC
TTGGGAAACGACAAGCCGGTGCCATTTGAGTTTTTGATCAATGGCGCATT
CCTTCGGACTTCGATCGATGAATACTTGACGGCCAATGGCATATCTGCGG
AAACCACTCTGGAAATTGAGTACATAAGAGCGTTGATTCCCCCGCTCCAT
ATTGCCTCCTTCGAGCATGATGACTGGGTTGGCTCTGTGGATGTCCTCTC
TGCGACCTCGCCTGCTACCTCTTGGGCTTCTGCGGTCGTCTCTCCAGGCC
AGGAGAGAATCCTATCGGGAAGCTATGACGGATTGCTTCGTGTGTGGAAT
ATGTCCTCCCAGATCATCGCAACCTCACCGTCCCCGGCTGATGGAGGGCA
CGGTGCGTCCATCAAAGCCGCTAAGTTCATCTCGCCGAATTCGATTGTGT
CGGCTGGCCTTGATCGCACCGTTCGACTCTGGAAGTACAATGAAAGCGAT
GATGGATTCTCAGGAAAGATCACTCCGCAGATTGAGCTCTACGGACACAA
ATCTGGTATCAACTCGTTGGCTGTGCATGCCCCCTCGAACCGTATTCTCT
CCGCCTCGTCAGACCACAGCATTGGCTTCTGGTCGACAAAGAAGTCAGAT
GCCCCAGCTGCCCCCGAGAATCTGGTTCCATCTGCTGCGTCACGGAGCTC
GAAGCGCAGAAAGGTGAGCTCGTCCGTCAGCATCCCGCAGCGTGGCCCGC
TTGCGCTGTTGTCTTCCCACACTGCGCCAGTGTCAGCTGCCATGTTTGAC
ACAAACGACTCGACTGTCGGCTATTCTACTTCGTGGGATCACTCTCTGCG
TACATGGGATCTGGTCACGGCCGCTTTAGTAGACACCAGATCGACATCCC
ATTCGTTGCTATCTCTCGAGCATCTCCCCGAGCACCACCTTCTTGCGACA
GGAACTTCCGCTCGCCACATCACTCTCATCGATCCTCGTACATCAGCGAC
AACCATCTCCGCCATGACCCTCAGAGGTCACACCAATGCCGTGGTTTCGC
TGTCCCGCGATCCCCACAGCAGCTACGGTCTCATCAGTGGTAGTCACGAC
GGTACATGTCGAATCTGGGATATCCGTGCTACGAAGACGGACAAGGACGG
TGTTGTTGGTGAGAGCGTGTATTCGATTACTCGGAGAAGCTTGGAAGAGC
AAGGTAAAGCGGATGCTAAGCGAGTAGGTGGAGAGGGAGTCAAGGTCTTC
AGTGTGTGCTGGGACCGCTCGGTTGGCATTGTCAGCGCCGGTGAGGATAA
GAGGATTCAGATCAACCGGGGTGAAGGCGTCTTGTCTTCCGTATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
YTM1KJC3_008509Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008509-T1.utr5p1KJC3_008509-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008509-T1.exon1KJC3_008509-T1.exon1Aspergillus niger KJC3exon
KJC3_008509-T1.exon2KJC3_008509-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008509-T1.cdsKJC3_008509-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008509-T1.utr3p1KJC3_008509-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008509-T1KJC3_008509-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR028599
DBxrefInterPro:IPR019775
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR012972
DBxrefInterPro:IPR001680
DBxrefInterPro:IPR020472
DBxrefPFAM:PF00400
DBxrefPFAM:PF08154
Productribosome bioproteinsis protein ytm1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2258848..2260630 +
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