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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2335273..2337657- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008538-T1 ID=KJC3_008538-T1|Name=KJC3_008538-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2385bp|location=Sequence derived from alignment at ch6:2335273..2337657- (Aspergillus niger KJC3)
GGCGTTCATTAGTCGACTCCGTCGCCAAACTGCCTTTTGACTCTCAAGAC
ACTTTGCAGGCTGCTTACGCCGTGTGATTTCGGTCAGCTTGGCAGAACCG
GGCTAGTAGAGGGCCTTAGGGATCCATTACCCACCGAGTTCTCCAAGTCT
GGGAAAAGGCCACCCAGGTTCTCCGCTACACTGGACATTCGAATCACTGA
GTCACTGTCGATCACGACACTCCCCTGCCTATCCGCAGCTCCGTCTTCGA
ATCGGGCTCACTCCTTGTCGACTCGTTGCCACCGCTCCGTGGCGTGAATA
GCGAATCCATTTCCCGCCAGTCCTAGCCAACCGTTCCGGCTTCGCAATTT
TCGTTTTCGTGGATTGGCCACGCGACCACCGCCAACGCAATCGCTCTACG
ATAGTTCGACTCGATCTTTATCCTCTAAAACTCGGAGCAATGTCTGCTGC
AGCAATGTCGAAAAAGAACAAGGGGAAGAAGGTCGCAGACCCCAATGAGA
CATCCAAGCTCTTGGCTGCCAAAATATCGCAGTTGGAGCAAGATGCTGCC
GGAGAAAAGGATCAGGAGGCAGAAATCGGTGCGTCATAATCATGAGTGGT
GGAATAAGTGGAATAGTAGTTGTTTCATGGGCTGACTGTTTGCCTATAGA
GCGCGAAGTTAAGAAGGCTACGAGGGACCTGAACCAACTCCTTAGCAATA
TCGAATCTCCGATGACACGGCTCGAGACGGTTCACAAAAAGTACACCGAA
CTACTGGCCGATATGAAGAAGCTAGATCGCGACTATTCTAAGAGCAAGAA
GCGGGCCGATCAACTGCAGAAGGATCAGGACAAGGGCAAATCCGAGTTGA
ACAAAACCGTTACTATGAAGGATAAATTAGAAAAGCTGTGTAGGGAGCTA
ACCAAGGAAAATAAGAAGGTCAAGGTAGGTTGGTCCAAGCTCCACAGCAT
CACTATTACGCTACACCACGTAGGGAGATGGCTAAACGAGATGGTTCATA
GGATGAGAACAAGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGCTTATTG
TTAACGAACGCCTCGATTCTCTGCTGTATGATATTCAGGACGTCATGGCT
GCCAAAGGGAATCCCCGCAGTGAGAAAGCGGACATCGATCTAGACGAAGC
GTGAGTTGCGGCTGTCTGCTGGGTGTGCTCATTAATCTCTGACCCTCTTA
TCATAGTTTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTTGAAATGC
GCGAGTTACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGAGATACAA
TGCCTTACCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGAATGAAGC
CGCTCGTTGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCGCATACCG
AAGCCGAACTACGCAGTCAACTAAACATCTACGTGGAAAAGTTCAAGCAG
GTATGGACCGATGTCGATGGCTTGCTCGGCCTCAGCCTCGTTTTGACCGC
TGGTAATAATAATATCGCAGGTGGAGGATACGCTGAACAACAGCAACGAG
CTTTTTCTTACGTTTCGCAAAGAAATGGAAGAGATGTCCAAAAAGACCAA
ACGGCTAGAGAAGGAAAACCACACCCTTACACGGAAGCACGATCAAACGA
ACCGCAACATACTCGAGATGGCGGAGGAGCGCACAAGGAATCATGAGGAG
TTAGAAAAGTGGCGAAAGAAAAGCCATCATTTGGAAGCACTTTGTCGTCG
AATGCAAGCCCAGGGTCGCGGGCAAGGTCTTGCTGCGGATTTGGATGGCG
ATGACGAGGGGACGGAGAGTGAATATGATGAGGACTATGAAGACGAGGAA
GATGATGAAGGAATCAGTGACGATGACTACGAGCTCGACAGCCCGGATGG
CGACATGAACGGAGACCGCAATATTCCCCAGCAAACCGAAAAGCCAGTAT
TTGGGCCTCCCCCGCCGCCCAACCTGCTGGAAGCGCGAGCCAACGGAAAT
AAGGCAATGATCAATGGATGCCACTAATGCAGTTTTCATCAATGTCATGT
TCTCGTTGTTCATGTTTCCTTGGGCTTGTGACCAAACACGATTGCGAAGT
CTTCGTCATTTGCGCTGGCAATGCCGCAATTGTCTCGGGTGTTCTTTTAC
GTCTCTGTTCAGCTGCGTGGTAGTTGGCCTTGATGAGTTGAAAATTTGCC
CCTCGAGAGCGTGCATTGGCAACTGCGCAGTGTGGCGCTGGTCGCTCGGG
GTCTCTCCTGTCTCCGTATGCAGATCTTGTAGCGGTTCGGCTCTTTAAAG
ATAGGTTGCCCTGCTCATTTAGGTTGCTGTCAGCCTTGAATTGCAACATG
CACCATCACAGCTGTGGGGGTTTTGCAAGTCGTGG back to topCoding sequence (CDS) from alignment at ch6:2335273..2337657- >KJC3_008538-T1 ID=KJC3_008538-T1|Name=KJC3_008538-T1|organism=Aspergillus niger KJC3|type=CDS|length=6570bp|location=Sequence derived from alignment at ch6:2335273..2337657- (Aspergillus niger KJC3)
GTGGAGGATACGCTGAACAACAGCAACGAGCTTTTTCTTACGTTTCGCAA
AGAAATGGAAGAGATGTCCAAAAAGACCAAACGGCTAGAGAAGGAAAACC
ACACCCTTACACGGAAGCACGATCAAACGAACCGCAACATACTCGAGATG
GCGGAGGAGCGCACAAGGAATCATGAGGAGTTAGAAAAGTGGCGAAAGAA
AAGCCATCATTTGGAAGCACTTTGTCGTCGAATGCAAGCCCAGGGTCGCG
GGCAAGGTCTTGCTGCGGATTTGGATGGCGATGACGAGGGGACGGAGAGT
GAATATGATGAGGACTATGAAGACGAGGAAGATGATGAAGGAATCAGTGA
CGATGACTACGAGCTCGACAGCCCGGATGGCGACATGAACGGAGACCGCA
ATATTCCCCAGCAAACCGAAAAGCCAGTATTTGGGCCTCCCCCGCCGCCC
AACCTGCTGGAAGCGCGAGCCAACGGAAATAAGGCAATGATCAATGGATG
CCACTAATTTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTTGAAATG
CGCGAGTTACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGAGATACA
ATGCCTTACCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGAATGAAG
CCGCTCGTTGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCGCATACC
GAAGCCGAACTACGCAGTCAACTAAACATCTACGTGGAAAAGTTCAAGCA
GGATGAGAACAAGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGCTTATTG
TTAACGAACGCCTCGATTCTCTGCTGTATGATATTCAGGACGTCATGGCT
GCCAAAGGGAATCCCCGCAGTGAGAAAGCGGACATCGATCTAGACGAAGC
AGCGCGAAGTTAAGAAGGCTACGAGGGACCTGAACCAACTCCTTAGCAAT
ATCGAATCTCCGATGACACGGCTCGAGACGGTTCACAAAAAGTACACCGA
ACTACTGGCCGATATGAAGAAGCTAGATCGCGACTATTCTAAGAGCAAGA
AGCGGGCCGATCAACTGCAGAAGGATCAGGACAAGGGCAAATCCGAGTTG
AACAAAACCGTTACTATGAAGGATAAATTAGAAAAGCTGTGTAGGGAGCT
AACCAAGGAAAATAAGAAGGTCAAGATGTCTGCTGCAGCAATGTCGAAAA
AGAACAAGGGGAAGAAGGTCGCAGACCCCAATGAGACATCCAAGCTCTTG
GCTGCCAAAATATCGCAGTTGGAGCAAGATGCTGCCGGAGAAAAGGATCA
GGAGGCAGAAATCGGTGGAGGATACGCTGAACAACAGCAACGAGCTTTTT
CTTACGTTTCGCAAAGAAATGGAAGAGATGTCCAAAAAGACCAAACGGCT
AGAGAAGGAAAACCACACCCTTACACGGAAGCACGATCAAACGAACCGCA
ACATACTCGAGATGGCGGAGGAGCGCACAAGGAATCATGAGGAGTTAGAA
AAGTGGCGAAAGAAAAGCCATCATTTGGAAGCACTTTGTCGTCGAATGCA
AGCCCAGGGTCGCGGGCAAGGTCTTGCTGCGGATTTGGATGGCGATGACG
AGGGGACGGAGAGTGAATATGATGAGGACTATGAAGACGAGGAAGATGAT
GAAGGAATCAGTGACGATGACTACGAGCTCGACAGCCCGGATGGCGACAT
GAACGGAGACCGCAATATTCCCCAGCAAACCGAAAAGCCAGTATTTGGGC
CTCCCCCGCCGCCCAACCTGCTGGAAGCGCGAGCCAACGGAAATAAGGCA
ATGATCAATGGATGCCACTAATTTGCGCGCAAAGATCAAAACTATTGGCG
AGAAATTTGAAATGCGCGAGTTACATTACAAGGCACTCCTTCGCAGCAAG
GATGCCGAGATACAATGCCTTACCGCCAAGTACGAAGAGCAGCGCCGTAC
AGCCGAGAATGAAGCCGCTCGTTGTCGTGCTCTGAGCTCCCAGGTCTCTA
CCTTCTCGCATACCGAAGCCGAACTACGCAGTCAACTAAACATCTACGTG
GAAAAGTTCAAGCAGGATGAGAACAAGAAGCTTGAGGAGACCGAAAAGAA
AGCGCGGCTTATTGTTAACGAACGCCTCGATTCTCTGCTGTATGATATTC
AGGACGTCATGGCTGCCAAAGGGAATCCCCGCAGTGAGAAAGCGGACATC
GATCTAGACGAAGCAGCGCGAAGTTAAGAAGGCTACGAGGGACCTGAACC
AACTCCTTAGCAATATCGAATCTCCGATGACACGGCTCGAGACGGTTCAC
AAAAAGTACACCGAACTACTGGCCGATATGAAGAAGCTAGATCGCGACTA
TTCTAAGAGCAAGAAGCGGGCCGATCAACTGCAGAAGGATCAGGACAAGG
GCAAATCCGAGTTGAACAAAACCGTTACTATGAAGGATAAATTAGAAAAG
CTGTGTAGGGAGCTAACCAAGGAAAATAAGAAGGTCAAGATGTCTGCTGC
AGCAATGTCGAAAAAGAACAAGGGGAAGAAGGTCGCAGACCCCAATGAGA
CATCCAAGCTCTTGGCTGCCAAAATATCGCAGTTGGAGCAAGATGCTGCC
GGAGAAAAGGATCAGGAGGCAGAAATCGGTGGAGGATACGCTGAACAACA
GCAACGAGCTTTTTCTTACGTTTCGCAAAGAAATGGAAGAGATGTCCAAA
AAGACCAAACGGCTAGAGAAGGAAAACCACACCCTTACACGGAAGCACGA
TCAAACGAACCGCAACATACTCGAGATGGCGGAGGAGCGCACAAGGAATC
ATGAGGAGTTAGAAAAGTGGCGAAAGAAAAGCCATCATTTGGAAGCACTT
TGTCGTCGAATGCAAGCCCAGGGTCGCGGGCAAGGTCTTGCTGCGGATTT
GGATGGCGATGACGAGGGGACGGAGAGTGAATATGATGAGGACTATGAAG
ACGAGGAAGATGATGAAGGAATCAGTGACGATGACTACGAGCTCGACAGC
CCGGATGGCGACATGAACGGAGACCGCAATATTCCCCAGCAAACCGAAAA
GCCAGTATTTGGGCCTCCCCCGCCGCCCAACCTGCTGGAAGCGCGAGCCA
ACGGAAATAAGGCAATGATCAATGGATGCCACTAATTTGCGCGCAAAGAT
CAAAACTATTGGCGAGAAATTTGAAATGCGCGAGTTACATTACAAGGCAC
TCCTTCGCAGCAAGGATGCCGAGATACAATGCCTTACCGCCAAGTACGAA
GAGCAGCGCCGTACAGCCGAGAATGAAGCCGCTCGTTGTCGTGCTCTGAG
CTCCCAGGTCTCTACCTTCTCGCATACCGAAGCCGAACTACGCAGTCAAC
TAAACATCTACGTGGAAAAGTTCAAGCAGGATGAGAACAAGAAGCTTGAG
GAGACCGAAAAGAAAGCGCGGCTTATTGTTAACGAACGCCTCGATTCTCT
GCTGTATGATATTCAGGACGTCATGGCTGCCAAAGGGAATCCCCGCAGTG
AGAAAGCGGACATCGATCTAGACGAAGCAGCGCGAAGTTAAGAAGGCTAC
GAGGGACCTGAACCAACTCCTTAGCAATATCGAATCTCCGATGACACGGC
TCGAGACGGTTCACAAAAAGTACACCGAACTACTGGCCGATATGAAGAAG
CTAGATCGCGACTATTCTAAGAGCAAGAAGCGGGCCGATCAACTGCAGAA
GGATCAGGACAAGGGCAAATCCGAGTTGAACAAAACCGTTACTATGAAGG
ATAAATTAGAAAAGCTGTGTAGGGAGCTAACCAAGGAAAATAAGAAGGTC
AAGATGTCTGCTGCAGCAATGTCGAAAAAGAACAAGGGGAAGAAGGTCGC
AGACCCCAATGAGACATCCAAGCTCTTGGCTGCCAAAATATCGCAGTTGG
AGCAAGATGCTGCCGGAGAAAAGGATCAGGAGGCAGAAATCGGTGGAGGA
TACGCTGAACAACAGCAACGAGCTTTTTCTTACGTTTCGCAAAGAAATGG
AAGAGATGTCCAAAAAGACCAAACGGCTAGAGAAGGAAAACCACACCCTT
ACACGGAAGCACGATCAAACGAACCGCAACATACTCGAGATGGCGGAGGA
GCGCACAAGGAATCATGAGGAGTTAGAAAAGTGGCGAAAGAAAAGCCATC
ATTTGGAAGCACTTTGTCGTCGAATGCAAGCCCAGGGTCGCGGGCAAGGT
CTTGCTGCGGATTTGGATGGCGATGACGAGGGGACGGAGAGTGAATATGA
TGAGGACTATGAAGACGAGGAAGATGATGAAGGAATCAGTGACGATGACT
ACGAGCTCGACAGCCCGGATGGCGACATGAACGGAGACCGCAATATTCCC
CAGCAAACCGAAAAGCCAGTATTTGGGCCTCCCCCGCCGCCCAACCTGCT
GGAAGCGCGAGCCAACGGAAATAAGGCAATGATCAATGGATGCCACTAAT
TTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTTGAAATGCGCGAGTT
ACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGAGATACAATGCCTTA
CCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGAATGAAGCCGCTCGT
TGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCGCATACCGAAGCCGA
ACTACGCAGTCAACTAAACATCTACGTGGAAAAGTTCAAGCAGGATGAGA
ACAAGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGCTTATTGTTAACGAA
CGCCTCGATTCTCTGCTGTATGATATTCAGGACGTCATGGCTGCCAAAGG
GAATCCCCGCAGTGAGAAAGCGGACATCGATCTAGACGAAGCAGCGCGAA
GTTAAGAAGGCTACGAGGGACCTGAACCAACTCCTTAGCAATATCGAATC
TCCGATGACACGGCTCGAGACGGTTCACAAAAAGTACACCGAACTACTGG
CCGATATGAAGAAGCTAGATCGCGACTATTCTAAGAGCAAGAAGCGGGCC
GATCAACTGCAGAAGGATCAGGACAAGGGCAAATCCGAGTTGAACAAAAC
CGTTACTATGAAGGATAAATTAGAAAAGCTGTGTAGGGAGCTAACCAAGG
AAAATAAGAAGGTCAAGATGTCTGCTGCAGCAATGTCGAAAAAGAACAAG
GGGAAGAAGGTCGCAGACCCCAATGAGACATCCAAGCTCTTGGCTGCCAA
AATATCGCAGTTGGAGCAAGATGCTGCCGGAGAAAAGGATCAGGAGGCAG
AAATCGGTGGAGGATACGCTGAACAACAGCAACGAGCTTTTTCTTACGTT
TCGCAAAGAAATGGAAGAGATGTCCAAAAAGACCAAACGGCTAGAGAAGG
AAAACCACACCCTTACACGGAAGCACGATCAAACGAACCGCAACATACTC
GAGATGGCGGAGGAGCGCACAAGGAATCATGAGGAGTTAGAAAAGTGGCG
AAAGAAAAGCCATCATTTGGAAGCACTTTGTCGTCGAATGCAAGCCCAGG
GTCGCGGGCAAGGTCTTGCTGCGGATTTGGATGGCGATGACGAGGGGACG
GAGAGTGAATATGATGAGGACTATGAAGACGAGGAAGATGATGAAGGAAT
CAGTGACGATGACTACGAGCTCGACAGCCCGGATGGCGACATGAACGGAG
ACCGCAATATTCCCCAGCAAACCGAAAAGCCAGTATTTGGGCCTCCCCCG
CCGCCCAACCTGCTGGAAGCGCGAGCCAACGGAAATAAGGCAATGATCAA
TGGATGCCACTAATTTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTT
GAAATGCGCGAGTTACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGA
GATACAATGCCTTACCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGA
ATGAAGCCGCTCGTTGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCG
CATACCGAAGCCGAACTACGCAGTCAACTAAACATCTACGTGGAAAAGTT
CAAGCAGGATGAGAACAAGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGC
TTATTGTTAACGAACGCCTCGATTCTCTGCTGTATGATATTCAGGACGTC
ATGGCTGCCAAAGGGAATCCCCGCAGTGAGAAAGCGGACATCGATCTAGA
CGAAGCAGCGCGAAGTTAAGAAGGCTACGAGGGACCTGAACCAACTCCTT
AGCAATATCGAATCTCCGATGACACGGCTCGAGACGGTTCACAAAAAGTA
CACCGAACTACTGGCCGATATGAAGAAGCTAGATCGCGACTATTCTAAGA
GCAAGAAGCGGGCCGATCAACTGCAGAAGGATCAGGACAAGGGCAAATCC
GAGTTGAACAAAACCGTTACTATGAAGGATAAATTAGAAAAGCTGTGTAG
GGAGCTAACCAAGGAAAATAAGAAGGTCAAGATGTCTGCTGCAGCAATGT
CGAAAAAGAACAAGGGGAAGAAGGTCGCAGACCCCAATGAGACATCCAAG
CTCTTGGCTGCCAAAATATCGCAGTTGGAGCAAGATGCTGCCGGAGAAAA
GGATCAGGAGGCAGAAATCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0019905 | syntaxin binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008538-T1.utr3p1 | KJC3_008538-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008538-T1.utr5p1 | KJC3_008538-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR026183 |
| DBxref | PFAM:PF09728 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2335273..2337657 - |
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