|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2335273..2337657- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008538-T2 ID=KJC3_008538-T2|Name=KJC3_008538-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2385bp|location=Sequence derived from alignment at ch6:2335273..2337657- (Aspergillus niger KJC3)
GGCGTTCATTAGTCGACTCCGTCGCCAAACTGCCTTTTGACTCTCAAGAC
ACTTTGCAGGCTGCTTACGCCGTGTGATTTCGGTCAGCTTGGCAGAACCG
GGCTAGTAGAGGGCCTTAGGGATCCATTACCCACCGAGTTCTCCAAGTCT
GGGAAAAGGCCACCCAGGTTCTCCGCTACACTGGACATTCGAATCACTGA
GTCACTGTCGATCACGACACTCCCCTGCCTATCCGCAGCTCCGTCTTCGA
ATCGGGCTCACTCCTTGTCGACTCGTTGCCACCGCTCCGTGGCGTGAATA
GCGAATCCATTTCCCGCCAGTCCTAGCCAACCGTTCCGGCTTCGCAATTT
TCGTTTTCGTGGATTGGCCACGCGACCACCGCCAACGCAATCGCTCTACG
ATAGTTCGACTCGATCTTTATCCTCTAAAACTCGGAGCAATGTCTGCTGC
AGCAATGTCGAAAAAGAACAAGGGGAAGAAGGTCGCAGACCCCAATGAGA
CATCCAAGCTCTTGGCTGCCAAAATATCGCAGTTGGAGCAAGATGCTGCC
GGAGAAAAGGATCAGGAGGCAGAAATCGGTGCGTCATAATCATGAGTGGT
GGAATAAGTGGAATAGTAGTTGTTTCATGGGCTGACTGTTTGCCTATAGA
GCGCGAAGTTAAGAAGGCTACGAGGGACCTGAACCAACTCCTTAGCAATA
TCGAATCTCCGATGACACGGCTCGAGACGGTTCACAAAAAGTACACCGAA
CTACTGGCCGATATGAAGAAGCTAGATCGCGACTATTCTAAGAGCAAGAA
GCGGGCCGATCAACTGCAGAAGGATCAGGACAAGGGCAAATCCGAGTTGA
ACAAAACCGTTACTATGAAGGATAAATTAGAAAAGCTGTGTAGGGAGCTA
ACCAAGGAAAATAAGAAGGTCAAGGTAGGTTGGTCCAAGCTCCACAGCAT
CACTATTACGCTACACCACGTAGGGAGATGGCTAAACGAGATGGTTCATA
GGATGAGAACAAGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGCTTATTG
TTAACGAACGCCTCGATTCTCTGCTGTATGATATTCAGGACGTCATGGCT
GCCAAAGGGAATCCCCGCAGTGAGAAAGCGGACATCGATCTAGACGAAGC
GTGAGTTGCGGCTGTCTGCTGGGTGTGCTCATTAATCTCTGACCCTCTTA
TCATAGTTTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTTGAAATGC
GCGAGTTACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGAGATACAA
TGCCTTACCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGAATGAAGC
CGCTCGTTGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCGCATACCG
AAGCCGAACTACGCAGTCAACTAAACATCTACGTGGAAAAGTTCAAGCAG
GTATGGACCGATGTCGATGGCTTGCTCGGCCTCAGCCTCGTTTTGACCGC
TGGTAATAATAATATCGCAGGTGGAGGATACGCTGAACAACAGCAACGAG
CTTTTTCTTACGTTTCGCAAAGAAATGGAAGAGATGTCCAAAAAGACCAA
ACGGCTAGAGAAGGAAAACCACACCCTTACACGGAAGCACGATCAAACGA
ACCGCAACATACTCGAGATGGCGGAGGAGCGCACAAGGAATCATGAGGAG
TTAGAAAAGTGGCGAAAGAAAAGCCATCATTTGGAAGCACTTTGTCGTCG
AATGCAAGCCCAGGGTCGCGGGCAAGGTCTTGCTGCGGATTTGGATGGCG
ATGACGAGGGGACGGAGAGTGAATATGATGAGGACTATGAAGACGAGGAA
GATGATGAAGGAATCAGTGACGATGACTACGAGCTCGACAGCCCGGATGG
CGACATGAACGGAGACCGCAATATTCCCCAGCAAACCGAAAAGCCAGTAT
TTGGGCCTCCCCCGCCGCCCAACCTGCTGGAAGCGCGAGCCAACGGAAAT
AAGGCAATGATCAATGGATGCCACTAATGCAGTTTTCATCAATGTCATGT
TCTCGTTGTTCATGTTTCCTTGGGCTTGTGACCAAACACGATTGCGAAGT
CTTCGTCATTTGCGCTGGCAATGCCGCAATTGTCTCGGGTGTTCTTTTAC
GTCTCTGTTCAGCTGCGTGGTAGTTGGCCTTGATGAGTTGAAAATTTGCC
CCTCGAGAGCGTGCATTGGCAACTGCGCAGTGTGGCGCTGGTCGCTCGGG
GTCTCTCCTGTCTCCGTATGCAGATCTTGTAGCGGTTCGGCTCTTTAAAG
ATAGGTTGCCCTGCTCATTTAGGTTGCTGTCAGCCTTGAATTGCAACATG
CACCATCACAGCTGTGGGGGTTTTGCAAGTCGTGG back to topCoding sequence (CDS) from alignment at ch6:2335273..2337657- >KJC3_008538-T2 ID=KJC3_008538-T2|Name=KJC3_008538-T2|organism=Aspergillus niger KJC3|type=CDS|length=4212bp|location=Sequence derived from alignment at ch6:2335273..2337657- (Aspergillus niger KJC3)
TTTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTTGAAATGCGCGAGT
TACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGAGATACAATGCCTT
ACCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGAATGAAGCCGCTCG
TTGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCGCATACCGAAGCCG
AACTACGCAGTCAACTAAACATCTACGTGGAAAAGTTCAAGCAGGTATGG
ACCGATGTCGATGGCTTGCTCGGCCTCAGCCTCGTTTTGACCGCTGGTAA
TAATAATATCGCAGGTGGAGGATACGCTGAACAACAGCAACGAGCTTTTT
CTTACGTTTCGCAAAGAAATGGAAGAGATGTCCAAAAAGACCAAACGGCT
AGAGAAGGAAAACCACACCCTTACACGGAAGCACGATCAAACGAACCGCA
ACATACTCGAGATGGCGGAGGAGCGCACAAGGAATCATGAGATGAGAACA
AGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGCTTATTGTTAACGAACGC
CTCGATTCTCTGCTGTATGATATTCAGGACGTCATGGCTGCCAAAGGGAA
TCCCCGCAGTGAGAAAGCGGACATCGATCTAGACGAAGCAGCGCGAAGTT
AAGAAGGCTACGAGGGACCTGAACCAACTCCTTAGCAATATCGAATCTCC
GATGACACGGCTCGAGACGGTTCACAAAAAGTACACCGAACTACTGGCCG
ATATGAAGAAGCTAGATCGCGACTATTCTAAGAGCAAGAAGCGGGCCGAT
CAACTGCAGAAGGATCAGGACAAGGGCAAATCCGAGTTGAACAAAACCGT
TACTATGAAGGATAAATTAGAAAAGCTGTGTAGGGAGCTAACCAAGGAAA
ATAAGAAGGTCAAGATGTCTGCTGCAGCAATGTCGAAAAAGAACAAGGGG
AAGAAGGTCGCAGACCCCAATGAGACATCCAAGCTCTTGGCTGCCAAAAT
ATCGCAGTTGGAGCAAGATGCTGCCGGAGAAAAGGATCAGGAGGCAGAAA
TCGTTTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTTGAAATGCGCG
AGTTACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGAGATACAATGC
CTTACCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGAATGAAGCCGC
TCGTTGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCGCATACCGAAG
CCGAACTACGCAGTCAACTAAACATCTACGTGGAAAAGTTCAAGCAGGTA
TGGACCGATGTCGATGGCTTGCTCGGCCTCAGCCTCGTTTTGACCGCTGG
TAATAATAATATCGCAGGTGGAGGATACGCTGAACAACAGCAACGAGCTT
TTTCTTACGTTTCGCAAAGAAATGGAAGAGATGTCCAAAAAGACCAAACG
GCTAGAGAAGGAAAACCACACCCTTACACGGAAGCACGATCAAACGAACC
GCAACATACTCGAGATGGCGGAGGAGCGCACAAGGAATCATGAGATGAGA
ACAAGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGCTTATTGTTAACGAA
CGCCTCGATTCTCTGCTGTATGATATTCAGGACGTCATGGCTGCCAAAGG
GAATCCCCGCAGTGAGAAAGCGGACATCGATCTAGACGAAGCAGCGCGAA
GTTAAGAAGGCTACGAGGGACCTGAACCAACTCCTTAGCAATATCGAATC
TCCGATGACACGGCTCGAGACGGTTCACAAAAAGTACACCGAACTACTGG
CCGATATGAAGAAGCTAGATCGCGACTATTCTAAGAGCAAGAAGCGGGCC
GATCAACTGCAGAAGGATCAGGACAAGGGCAAATCCGAGTTGAACAAAAC
CGTTACTATGAAGGATAAATTAGAAAAGCTGTGTAGGGAGCTAACCAAGG
AAAATAAGAAGGTCAAGATGTCTGCTGCAGCAATGTCGAAAAAGAACAAG
GGGAAGAAGGTCGCAGACCCCAATGAGACATCCAAGCTCTTGGCTGCCAA
AATATCGCAGTTGGAGCAAGATGCTGCCGGAGAAAAGGATCAGGAGGCAG
AAATCGTTTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTTGAAATGC
GCGAGTTACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGAGATACAA
TGCCTTACCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGAATGAAGC
CGCTCGTTGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCGCATACCG
AAGCCGAACTACGCAGTCAACTAAACATCTACGTGGAAAAGTTCAAGCAG
GTATGGACCGATGTCGATGGCTTGCTCGGCCTCAGCCTCGTTTTGACCGC
TGGTAATAATAATATCGCAGGTGGAGGATACGCTGAACAACAGCAACGAG
CTTTTTCTTACGTTTCGCAAAGAAATGGAAGAGATGTCCAAAAAGACCAA
ACGGCTAGAGAAGGAAAACCACACCCTTACACGGAAGCACGATCAAACGA
ACCGCAACATACTCGAGATGGCGGAGGAGCGCACAAGGAATCATGAGATG
AGAACAAGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGCTTATTGTTAAC
GAACGCCTCGATTCTCTGCTGTATGATATTCAGGACGTCATGGCTGCCAA
AGGGAATCCCCGCAGTGAGAAAGCGGACATCGATCTAGACGAAGCAGCGC
GAAGTTAAGAAGGCTACGAGGGACCTGAACCAACTCCTTAGCAATATCGA
ATCTCCGATGACACGGCTCGAGACGGTTCACAAAAAGTACACCGAACTAC
TGGCCGATATGAAGAAGCTAGATCGCGACTATTCTAAGAGCAAGAAGCGG
GCCGATCAACTGCAGAAGGATCAGGACAAGGGCAAATCCGAGTTGAACAA
AACCGTTACTATGAAGGATAAATTAGAAAAGCTGTGTAGGGAGCTAACCA
AGGAAAATAAGAAGGTCAAGATGTCTGCTGCAGCAATGTCGAAAAAGAAC
AAGGGGAAGAAGGTCGCAGACCCCAATGAGACATCCAAGCTCTTGGCTGC
CAAAATATCGCAGTTGGAGCAAGATGCTGCCGGAGAAAAGGATCAGGAGG
CAGAAATCGTTTGCGCGCAAAGATCAAAACTATTGGCGAGAAATTTGAAA
TGCGCGAGTTACATTACAAGGCACTCCTTCGCAGCAAGGATGCCGAGATA
CAATGCCTTACCGCCAAGTACGAAGAGCAGCGCCGTACAGCCGAGAATGA
AGCCGCTCGTTGTCGTGCTCTGAGCTCCCAGGTCTCTACCTTCTCGCATA
CCGAAGCCGAACTACGCAGTCAACTAAACATCTACGTGGAAAAGTTCAAG
CAGGTATGGACCGATGTCGATGGCTTGCTCGGCCTCAGCCTCGTTTTGAC
CGCTGGTAATAATAATATCGCAGGTGGAGGATACGCTGAACAACAGCAAC
GAGCTTTTTCTTACGTTTCGCAAAGAAATGGAAGAGATGTCCAAAAAGAC
CAAACGGCTAGAGAAGGAAAACCACACCCTTACACGGAAGCACGATCAAA
CGAACCGCAACATACTCGAGATGGCGGAGGAGCGCACAAGGAATCATGAG
ATGAGAACAAGAAGCTTGAGGAGACCGAAAAGAAAGCGCGGCTTATTGTT
AACGAACGCCTCGATTCTCTGCTGTATGATATTCAGGACGTCATGGCTGC
CAAAGGGAATCCCCGCAGTGAGAAAGCGGACATCGATCTAGACGAAGCAG
CGCGAAGTTAAGAAGGCTACGAGGGACCTGAACCAACTCCTTAGCAATAT
CGAATCTCCGATGACACGGCTCGAGACGGTTCACAAAAAGTACACCGAAC
TACTGGCCGATATGAAGAAGCTAGATCGCGACTATTCTAAGAGCAAGAAG
CGGGCCGATCAACTGCAGAAGGATCAGGACAAGGGCAAATCCGAGTTGAA
CAAAACCGTTACTATGAAGGATAAATTAGAAAAGCTGTGTAGGGAGCTAA
CCAAGGAAAATAAGAAGGTCAAGATGTCTGCTGCAGCAATGTCGAAAAAG
AACAAGGGGAAGAAGGTCGCAGACCCCAATGAGACATCCAAGCTCTTGGC
TGCCAAAATATCGCAGTTGGAGCAAGATGCTGCCGGAGAAAAGGATCAGG
AGGCAGAAATCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0019905 | syntaxin binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008538-T2.utr3p1 | KJC3_008538-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008538-T2.utr5p1 | KJC3_008538-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR026183 |
| DBxref | PFAM:PF09728 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2335273..2337657 - |
|
