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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2346649..2348101+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008542-T1 ID=KJC3_008542-T1|Name=KJC3_008542-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1453bp|location=Sequence derived from alignment at ch6:2346649..2348101+ (Aspergillus niger KJC3)
GGTCTAGTATACTAAGCTCACTTCAGGCGTCCGGTCATTGCCTAGTAATT
GCTCATCTTTAGCATGGTTTATTATATTCGTTTTCTCAAGACACCGAGGT
TTCAAAAACAGAAACCTGGGTCTATATCCGTCTCCGCTCTAATTTGCATC
ACTACAGACCTGGGAGACGCTTTTCTCGCACAAGATGTGAACTTGCTTGT
AACACTGAGTCTCAATGACTCTGGTAAACTTCTGTATCAGGAACCATTGA
GCTGGAAGGCTGGAAGGCGCGAGCTCCCAATAATGCTCGGGCCCTTTTCT
GCCAATATATCTCAGCAGACAATTGTTCTAGGCGTGACGGCCACAAGTCC
GCAGAAGCGGTCTCCCTCACCAGATCGCTTGCTGGGCAATTCTAGTCTTC
CTCTAGTCATGTCGGCCTGGAGCGCACCTTTTGGTGGGTCGCCGTCCTCA
GTAGCAGAGAAGCTTGTTGAAAGACGCTTTGGACCCCAGGATCGTCTAGG
CTTGAGGATATGGGAAGAGACTGGGAACAGTATCGCTCGGCATATCTGGT
AAGGCTTTCTTATTGGAAACGAGGCTCTCTTCTTCCTTGTACGAGGCTTA
CATATCTCCAGGGATGCGGCGGTGGCTTCGGTCGTATACCTTCAGCAGAT
AGTGGCAGGAGATCCTGCGGTCTCTGTGCCATTATTGCAGGGCCTTCTTC
GGGGCGAACGCAACACTCCTCTCCATGTTCTCGAACTAGGATCAGGATGT
GGCGTTGTAGGAATTGCTCTTGCTGAGCTTCTCCCTCATTGTTCTGTAGT
ACTCACAGATCTGCCTGAGGTGGAGGAAATTGTGACACAGAACATAGCTG
TTGCGAAGCCGGCCGATTCCTCTGAGCTCGAGTTCAGCACCCTTGACTGG
GATGAGGAACTTCCGAGTGACTTGTGTGGTGGTTCGGTAGATCTGGTCCT
CGTTTCAGATTGTACTTATAATGCAGACAGCTTGCCTGCGCTAGTCTCAG
TACTAAGCCGATTAGTGCAAATGTCGCCTGAGGCTGTCATCTTGGTGGCA
TTGAAGAGACGTCATGAAAGCGAGTCTATTTTCTTCGATCTGATGCAGTC
TGCTGGGCTCCATAATTTGCACCTAGATCGGAAGCAGCTCCCATCGCAAC
ACGGTCAATTTGACGACATTGAATTGCGTTGTTACGGCAGAGAAAGGGGT
ATATCATCAAGTCAATAGTCGGGTAAGATACATGCTTGGATTATAGCCAG
GATTACATAGGTTACTGAACGGCCAGTGGCGGTACATACTCCCTTAAAGT
CAAAATCAGCATTTGCTGCAAAGGCAACTGATCACAGCTGCACAGCCCTA
CCAAGGCTAGGAGCGTTAATCAAGCGCAGATTGGTTCATCATGCTCTTCC
ATAACCCCCGGCTTCTCGGAAATTTTGCCCCTTGGACCTGTATTGTGGTG
GTG back to topCoding sequence (CDS) from alignment at ch6:2346649..2348101+ >KJC3_008542-T1 ID=KJC3_008542-T1|Name=KJC3_008542-T1|organism=Aspergillus niger KJC3|type=CDS|length=2184bp|location=Sequence derived from alignment at ch6:2346649..2348101+ (Aspergillus niger KJC3)
ATGGTTTATTATATTCGTTTTCTCAAGACACCGAGGTTTCAAAAACAGAA
ACCTGGGTCTATATCCGTCTCCGCTCTAATTTGCATCACTACAGACCTGG
GAGACGCTTTTCTCGCACAAGATGTGAACTTGCTTGTAACACTGAGTCTC
AATGACTCTGGTAAACTTCTGTATCAGGAACCATTGAGCTGGAAGGCTGG
AAGGCGCGAGCTCCCAATAATGCTCGGGCCCTTTTCTGCCAATATATCTC
AGCAGACAATTGTTCTAGGCGTGACGGCCACAAGTCCGCAGAAGCGGTCT
CCCTCACCAGATCGCTTGCTGGGCAATTCTAGTCTTCCTCTAGTCATGTC
GGCCTGGAGCGCACCTTTTGGTGGGTCGCCGTCCTCAGTAGCAGAGAAGC
TTGTTGAAAGACGCTTTGGACCCCAGGATCGTCTAGGCTTGAGGATATGG
GAAGAGACTGGGAACAGTATCGCTCGGCATATCTGGGATGCGGCGGTGGC
TTCGGTCGTATACCTTCAGCAGATAGTGGCAGGAGATCCTGCGGTCTCTG
TGCCATTATTGCAGGGCCTTCTTCGGGGCGAACGCAACACTCCTCTCCAT
GTTCTCGAACTAGGATCAGGATGTGGCGTTGTAGGAATTGCTCTTGCTGA
GCTTCTCCCTCATTGTTCTGTAGTACTCACAGATCTGCCTGAGGTGGAGG
AAATTGTGACACAGAACATAGCTGTTGCGAAGCCGGCCGATTCCTCTGAG
CTCGAGTTCAGCACCCTTGACTGGGATGAGGAACTTCCGAGTGACTTGTG
TGGTGGTTCGGTAGATCTGGTCCTCGTTTCAGATTGTACTTATAATGCAG
ACAGCTTGCCTGCGCTAGTCTCAGTACTAAGCCGATTAGTGCAAATGTCG
CCTGAGGCTGTCATCTTGGTGGCATTGAAGAGACGTCATGAAAGCGAGTC
TATTTTCTTCGATCTGATGCAGTCTGCTGGGCTCCATAATTTGCACCTAG
ATCGGAAGCAGCTCCCATCGCAACACGGTCAATTTGACGACATTGAATTG
CGTTGTTACGGCAGAGAAAGGGGTATATCATCAAGTCAATAGATGGTTTA
TTATATTCGTTTTCTCAAGACACCGAGGTTTCAAAAACAGAAACCTGGGT
CTATATCCGTCTCCGCTCTAATTTGCATCACTACAGACCTGGGAGACGCT
TTTCTCGCACAAGATGTGAACTTGCTTGTAACACTGAGTCTCAATGACTC
TGGTAAACTTCTGTATCAGGAACCATTGAGCTGGAAGGCTGGAAGGCGCG
AGCTCCCAATAATGCTCGGGCCCTTTTCTGCCAATATATCTCAGCAGACA
ATTGTTCTAGGCGTGACGGCCACAAGTCCGCAGAAGCGGTCTCCCTCACC
AGATCGCTTGCTGGGCAATTCTAGTCTTCCTCTAGTCATGTCGGCCTGGA
GCGCACCTTTTGGTGGGTCGCCGTCCTCAGTAGCAGAGAAGCTTGTTGAA
AGACGCTTTGGACCCCAGGATCGTCTAGGCTTGAGGATATGGGAAGAGAC
TGGGAACAGTATCGCTCGGCATATCTGGGATGCGGCGGTGGCTTCGGTCG
TATACCTTCAGCAGATAGTGGCAGGAGATCCTGCGGTCTCTGTGCCATTA
TTGCAGGGCCTTCTTCGGGGCGAACGCAACACTCCTCTCCATGTTCTCGA
ACTAGGATCAGGATGTGGCGTTGTAGGAATTGCTCTTGCTGAGCTTCTCC
CTCATTGTTCTGTAGTACTCACAGATCTGCCTGAGGTGGAGGAAATTGTG
ACACAGAACATAGCTGTTGCGAAGCCGGCCGATTCCTCTGAGCTCGAGTT
CAGCACCCTTGACTGGGATGAGGAACTTCCGAGTGACTTGTGTGGTGGTT
CGGTAGATCTGGTCCTCGTTTCAGATTGTACTTATAATGCAGACAGCTTG
CCTGCGCTAGTCTCAGTACTAAGCCGATTAGTGCAAATGTCGCCTGAGGC
TGTCATCTTGGTGGCATTGAAGAGACGTCATGAAAGCGAGTCTATTTTCT
TCGATCTGATGCAGTCTGCTGGGCTCCATAATTTGCACCTAGATCGGAAG
CAGCTCCCATCGCAACACGGTCAATTTGACGACATTGAATTGCGTTGTTA
CGGCAGAGAAAGGGGTATATCATCAAGTCAATAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008542-T1.utr5p1 | KJC3_008542-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008542-T1.utr3p1 | KJC3_008542-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029063 |
| DBxref | InterPro:IPR019410 |
| DBxref | PFAM:PF10294 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2346649..2348101 + |
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