|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2402193..2404440- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008567-T1 ID=KJC3_008567-T1|Name=KJC3_008567-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2248bp|location=Sequence derived from alignment at ch6:2402193..2404440- (Aspergillus niger KJC3)
CCGATTTCTCTTCTTGGAAGTCCACAGTTCAAGTCTGTGTCTACTGGCTG
TATGAAAACTCAAATGCAATAGATTGGCGTCTCTAATTTTCCGAAGATAA
GCTCGCAGCCACACCGCCAGTTTTGATGATCATCAACCGAACGACCATCT
AGATAGTCGCTATCTAGCGGGATTTGCTGCATATGGGCCTGAACTCCATG
GGCCCCTAATCTATCAACCTATGTACCGAAAATCAGGCCAACTCCTCTAT
AAGCACCAACGCTGAGGCATGTCCTCACTTTCAGGCGCGCGCTTTAGCCC
GCCGCAGTCAGCGCAACCATACAGGTCCATTTTCGGAGGTCCGAGTAGCC
AAGATGTTGCCGATCTGGTACCCTACCCAGAAACCCAAACTGGGGCCGGA
GATAGCCAGGAAGACCTTGACGTGATCATGGAAGAGGAGCCGATTGAGGA
CGATCACTCGGACGCTACTTACGTTGAGAGCAATGACGATGAGCAATCTG
GTTCAGATGCGGACAGCTATGCATCTGTTCCTCAGTCACCTAAAAAGCAG
CAGCAGCAGCAGCAGCAGATGCTCCAAAAATCGACTGAGCGTGACCGCCA
GCGTGATTCAGAGACCCCTTCGGCACATTCGTACCGTCCTAACAGATTCC
GCGGGCCTGAATCTACGTGGAGAAGATTGACTGCCGAAGATAGACAGAAT
GCTCAAGCTCTGGAAGATGTTCGAGCTCGAGATCTAGCTGCTCATTTGTA
CAATGCTTATGCGCTGCGAGTCCGGGCGCGAGAGATAGCGAGACGGGCGA
CGGAGACAAATGAGCAACTGCTGGATGAGATGGATACATTTGCTCCTCCG
AAGCGCTGGACCGCGTGGCCTCTACCTTCGGCCGAGGTGCCTAGACCGGA
TGAGGAAGTGCGGAAAAGTCTTGACGATGCTTGGACGCTGAGAATGCAGC
CAGATCCTCGACCAAGTGCCGAACTAGAGGAATCTGTTATGGCGTTCATG
TTACGGACGGCAAAGGAGAGGTTCATGGCCAGGGAGTGGGATTATCAGTC
GAAGCCATTTACATCCCATCGAAGAAAAAGATCAGCGTCTCAACACGAGA
CGCAGGATGAAAGTACCGCATGGGAAAGCGAGCGCGAGGGTGTGGATGGC
GTTCCATTACGCCCAGCTGTCCAGACAGACGACGATAAATCAAGACGACA
ACTACGCCCACTCACTCGGAACATACTCTCGCAGTTTGACGAGCTTCTCA
TGGGACTTCATCGTGCCCGGAAGGGCGGAGTGGCAGCGGATGACAGCTCC
GCAAGTGACTGGCAGACCGATACTGAAAGTGTGATCTCTGGCTCATCACC
TCGGAAGAGAAAAGGCAATTCTCAAAGAGCGAGAAGTCAATCGAGAGGAA
GAAAACGGACCCGACGGTCATCCTTTAAGAGCGGATCGAGTGATGCTCGT
TCTCGTAGTACACATGTATCAAGTGGGCCGGAGTCAAGCGTACACAGCTC
CTCTCAAGCAACCTCAAGATACAGATCACAGTCACAACATTCTTCCCGCT
CACGAGGCCGATCCGTCGGTAGTGATCGTCGACGGTCCGCCAGTCGTGTT
CGCCTCGGGATACGGGATTGGAGTGAGGTGTTGGGAGTCGCCTCCATGAT
AGGATGGCCGCCAGCCGTGGTGATGCGAACAGCACAGAGATGCGCAGCCT
TGTTTGGCGAAGATATGACTTTCCAGGTCCTCAAAGAAGGGAAGGTCAAG
CAAGATATAGGAGACGACGATACCAAGATATGGAAGTACAACGAAAGCGA
ATCAGAACTTGAAGTTCAGACTGATCTTGAGCCTGAATCTGAGGCCGAGG
CGGAAATTTCACAACCCTCCCGTTCTCAGAGCAGACGACCACGCTCTCGT
GCCGCTTCCACCAAGGGAGGCTCGACATCGCGAGCCAACAGTACGGCGCC
TGAAGACGCCGGGGATGGGTCCCGACCAAAAGGCAAAGGAGAGCATCGCA
AGCAGGATCTGGTCTGTCCCATCCGGGCGTGTTCCAGACATAGCAAGGGC
TTCTCCCGGACATGGAATCTCAATCTGCATATGAAGCGCATGCATCCGAA
TTACCGTTCCAGAAGCGATGGCAGATCGTCGACTGGCACGCGCGGTGAGA
ATGACGTTGATAATGAGTGAAATGGTGGTAGACTAATCAGATATAGCCAA
ATGGCTTATGTGTATATTTCTTGGGAATAATGACTCCCAACTGGTGCT back to topCoding sequence (CDS) from alignment at ch6:2402193..2404440- >KJC3_008567-T1 ID=KJC3_008567-T1|Name=KJC3_008567-T1|organism=Aspergillus niger KJC3|type=CDS|length=1902bp|location=Sequence derived from alignment at ch6:2402193..2404440- (Aspergillus niger KJC3)
ATGTCCTCACTTTCAGGCGCGCGCTTTAGCCCGCCGCAGTCAGCGCAACC
ATACAGGTCCATTTTCGGAGGTCCGAGTAGCCAAGATGTTGCCGATCTGG
TACCCTACCCAGAAACCCAAACTGGGGCCGGAGATAGCCAGGAAGACCTT
GACGTGATCATGGAAGAGGAGCCGATTGAGGACGATCACTCGGACGCTAC
TTACGTTGAGAGCAATGACGATGAGCAATCTGGTTCAGATGCGGACAGCT
ATGCATCTGTTCCTCAGTCACCTAAAAAGCAGCAGCAGCAGCAGCAGCAG
ATGCTCCAAAAATCGACTGAGCGTGACCGCCAGCGTGATTCAGAGACCCC
TTCGGCACATTCGTACCGTCCTAACAGATTCCGCGGGCCTGAATCTACGT
GGAGAAGATTGACTGCCGAAGATAGACAGAATGCTCAAGCTCTGGAAGAT
GTTCGAGCTCGAGATCTAGCTGCTCATTTGTACAATGCTTATGCGCTGCG
AGTCCGGGCGCGAGAGATAGCGAGACGGGCGACGGAGACAAATGAGCAAC
TGCTGGATGAGATGGATACATTTGCTCCTCCGAAGCGCTGGACCGCGTGG
CCTCTACCTTCGGCCGAGGTGCCTAGACCGGATGAGGAAGTGCGGAAAAG
TCTTGACGATGCTTGGACGCTGAGAATGCAGCCAGATCCTCGACCAAGTG
CCGAACTAGAGGAATCTGTTATGGCGTTCATGTTACGGACGGCAAAGGAG
AGGTTCATGGCCAGGGAGTGGGATTATCAGTCGAAGCCATTTACATCCCA
TCGAAGAAAAAGATCAGCGTCTCAACACGAGACGCAGGATGAAAGTACCG
CATGGGAAAGCGAGCGCGAGGGTGTGGATGGCGTTCCATTACGCCCAGCT
GTCCAGACAGACGACGATAAATCAAGACGACAACTACGCCCACTCACTCG
GAACATACTCTCGCAGTTTGACGAGCTTCTCATGGGACTTCATCGTGCCC
GGAAGGGCGGAGTGGCAGCGGATGACAGCTCCGCAAGTGACTGGCAGACC
GATACTGAAAGTGTGATCTCTGGCTCATCACCTCGGAAGAGAAAAGGCAA
TTCTCAAAGAGCGAGAAGTCAATCGAGAGGAAGAAAACGGACCCGACGGT
CATCCTTTAAGAGCGGATCGAGTGATGCTCGTTCTCGTAGTACACATGTA
TCAAGTGGGCCGGAGTCAAGCGTACACAGCTCCTCTCAAGCAACCTCAAG
ATACAGATCACAGTCACAACATTCTTCCCGCTCACGAGGCCGATCCGTCG
GTAGTGATCGTCGACGGTCCGCCAGTCGTGTTCGCCTCGGGATACGGGAT
TGGAGTGAGGTGTTGGGAGTCGCCTCCATGATAGGATGGCCGCCAGCCGT
GGTGATGCGAACAGCACAGAGATGCGCAGCCTTGTTTGGCGAAGATATGA
CTTTCCAGGTCCTCAAAGAAGGGAAGGTCAAGCAAGATATAGGAGACGAC
GATACCAAGATATGGAAGTACAACGAAAGCGAATCAGAACTTGAAGTTCA
GACTGATCTTGAGCCTGAATCTGAGGCCGAGGCGGAAATTTCACAACCCT
CCCGTTCTCAGAGCAGACGACCACGCTCTCGTGCCGCTTCCACCAAGGGA
GGCTCGACATCGCGAGCCAACAGTACGGCGCCTGAAGACGCCGGGGATGG
GTCCCGACCAAAAGGCAAAGGAGAGCATCGCAAGCAGGATCTGGTCTGTC
CCATCCGGGCGTGTTCCAGACATAGCAAGGGCTTCTCCCGGACATGGAAT
CTCAATCTGCATATGAAGCGCATGCATCCGAATTACCGTTCCAGAAGCGA
TGGCAGATCGTCGACTGGCACGCGCGGTGAGAATGACGTTGATAATGAGT
GA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008567-T1.utr3p1 | KJC3_008567-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR019622 |
| DBxref | PFAM:PF10680 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2402193..2404440 - |
|
