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KJC3_008578-T1, KJC3_008578-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008578-T1
Unique NameKJC3_008578-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2426415..2428725+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008578-T1 ID=KJC3_008578-T1|Name=KJC3_008578-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2311bp|location=Sequence derived from alignment at ch6:2426415..2428725+ (Aspergillus niger KJC3)
TTCCGCCATCTACGGCTTTTGCCTATGACAAGAGCCTTTTGCCAAGAAAC
AAACTTAGCCTAATTGACGTGTCCGCCATCTGCACTCAGGATTAAGTATT
AAGGTTAGTTGGAATGCTCCCCACCATAGCACGTGGAAATTGTATCAGTC
GGAACACTTTAGGAGACCGAGTCTTCATACGTAATTACTTGCTCATCTTG
CTCAAGTGGATTGTTCCACCTTCCAGGGACCAGCTTCTCGAAAAAGTCAA
CCTCCGAATAGTGGGGACAATGTCACAGGATAGGGACTAGCGTCCGATCC
AGGAGCCCGATCGGAGGAATGACCTGCTAGCTGTCGGAATTACATGGAAG
TGGCCAACAATCGCGAATTCCTCGTGTTGTTTAGCTCAGAAGACGGGTAG
TGGTGCCAGGGACTGATATGTCCTTTGTCTGGCCTTTACTTCTTCTTTCA
GATTGCCATAGGGCTTCTCTTCATTTCAACCCTGACAAAGGAGAAGGTCT
CTCCTAGAGAGCCTACTGATACCAAGACAAGGAGCATGACAATACCTGCT
GGCTATCTCCGATAGCATCCTTCACATACTACATTCACCGCTTAACGCTG
ACTGAAAATACATCCTTCGCGCCATAGAGAGTCAAAGGCATCGGTAGAAC
TAATAATAAAGGTAGCCCCACCGAACAGTTCAGAAAGCAGCATTTAAATT
TGTTCCGCCGTGAAAGTCTCGCTGTGAAGATACCTTCCAAGGCTAACATC
GCCGCCTGCGTGGTGCTGGGTGAATAGCAACTAGACCTCAGCAGGTTCCG
TGAGAAAAGCTCGCTGTCTACGGGAGGTTCCATAAAGCGAAACTCCCATA
CAGGTTCATTAGTCAGAGGATAAGTCACGCCCATATAAACAAACCTGAGG
AGGTCTGATGCTAGCTGATAAATGCTTATTCGCAGCATAACAGTCTAGGA
ACTTCCTATTCCATCTATAACAGCCCACACCTCTGCCATTGCAATCTAAG
CGCATTCTAAGCGACTTGCCACTTGGACAATCTTTCAATAGTATCCTTTG
GCACCAAAAGTGTCTTCCCATTGCTCACCATCAAAGCCCCAGACAAAGTA
TCATTCATCATCAGAATGAAGTTCGAACGACCCCCTTCGCCCCTTGCCCT
CGCTGACGGGAGGCTTGTATGTCGCGAACACCTCCTCGTGATCTGCGCTA
TGTGCTGCGTGGATTATAGCCACACGAGAGAGGATATTGAAATGGGGGAA
GCGGGCGACACCTATAGCTATGCGAAACAGGAAATCAAAATGGGGGAAGC
TGGTGATGTTTATAATGACAACAGTTCTAACAAAGCCTCCAGAAAAGAGA
GGCATACGTCGAACCCCATGTCAAGGGAGATTGATGAGCCAAACCAAAAG
TCTTACAACAGACTCAAGGGCCATGGAAACAGATCACATGGCAAAGAAAG
CCAAATGAAACCCGTTATCCCCAAGACATTCCTTCCCCCAACCCCAGACG
CTACTCCACGATCACTCTTCAAACCTCTCGTCTTCGTATCCGAGGGCAGG
CCTTCGATACGCCGATTTGTTGGAAGAGAGAACTACTACCAATGCCTGGT
ATATACAGCTGGCGCATGCCATGACAATTGGAAGGGAGATGAGAACTATG
CTAAGGCAGGATGGTCATTCGTATACAGGCCCCAGAATCCATCACGCAAC
ATCACCGGTGGGGTTGCTGGTCGCCTCGAGATGACGGGCCCAACTAAGGT
CTACCATAGGCAGACAAGCACTCGTGCAGAACTGCGAGCTGTGATTGCGG
CCTTGAAATATCTGTCTCATGATGGGAATACGTTTGACAGCTTGGTTGTT
GCTACGGACTCGAGTTATGTTGTCAACGGTGCAACACTCTGGATCCGCAA
GTGGCTCTCGAAGGGTTGGAGAAGTGCTATTGGGAAACCAATCAAGAATA
AGGACTTATGGGAGGCCCTCCTGAAGGAAGTGAGGTGTTGGTATGAGGAG
GGAAGAGAAATCTATCTGTGGCACATTGATCGGTTGCACAATCAGGATGC
AGTTAGACTGGCTAACTGGGCGACTGTCCCAGACTCGGCTCCTATTCAGT
TCGAGGAGGATATTTCTCATTCTGGATGATCGATCATGGAGAGCCTTTAT
CTACGGTGCTATAGTAAGCCCTCCCTTCTTTAGTTGTCACTTTGGGTGCC
TTCTGGGTTAACGGAGGGCTAGTTGCGTTGGCCTCCCTCTGCCTTAATTT
TGCTTTGTTAGTAATCCAATATGGGACTACTCAGGTGCCACAATATGATA
TGAAACTCCGC
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Coding sequence (CDS) from alignment at ch6:2426415..2428725+

>KJC3_008578-T1 ID=KJC3_008578-T1|Name=KJC3_008578-T1|organism=Aspergillus niger KJC3|type=CDS|length=1014bp|location=Sequence derived from alignment at ch6:2426415..2428725+ (Aspergillus niger KJC3)
ATGAAGTTCGAACGACCCCCTTCGCCCCTTGCCCTCGCTGACGGGAGGCT
TGTATGTCGCGAACACCTCCTCGTGATCTGCGCTATGTGCTGCGTGGATT
ATAGCCACACGAGAGAGGATATTGAAATGGGGGAAGCGGGCGACACCTAT
AGCTATGCGAAACAGGAAATCAAAATGGGGGAAGCTGGTGATGTTTATAA
TGACAACAGTTCTAACAAAGCCTCCAGAAAAGAGAGGCATACGTCGAACC
CCATGTCAAGGGAGATTGATGAGCCAAACCAAAAGTCTTACAACAGACTC
AAGGGCCATGGAAACAGATCACATGGCAAAGAAAGCCAAATGAAACCCGT
TATCCCCAAGACATTCCTTCCCCCAACCCCAGACGCTACTCCACGATCAC
TCTTCAAACCTCTCGTCTTCGTATCCGAGGGCAGGCCTTCGATACGCCGA
TTTGTTGGAAGAGAGAACTACTACCAATGCCTGGTATATACAGCTGGCGC
ATGCCATGACAATTGGAAGGGAGATGAGAACTATGCTAAGGCAGGATGGT
CATTCGTATACAGGCCCCAGAATCCATCACGCAACATCACCGGTGGGGTT
GCTGGTCGCCTCGAGATGACGGGCCCAACTAAGGTCTACCATAGGCAGAC
AAGCACTCGTGCAGAACTGCGAGCTGTGATTGCGGCCTTGAAATATCTGT
CTCATGATGGGAATACGTTTGACAGCTTGGTTGTTGCTACGGACTCGAGT
TATGTTGTCAACGGTGCAACACTCTGGATCCGCAAGTGGCTCTCGAAGGG
TTGGAGAAGTGCTATTGGGAAACCAATCAAGAATAAGGACTTATGGGAGG
CCCTCCTGAAGGAAGTGAGGTGTTGGTATGAGGAGGGAAGAGAAATCTAT
CTGTGGCACATTGATCGGTTGCACAATCAGGATGCAGTTAGACTGGCTAA
CTGGGCGACTGTCCCAGACTCGGCTCCTATTCAGTTCGAGGAGGATATTT
CTCATTCTGGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004523RNA-DNA hybrid ribonuclease activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008578KJC3_008578Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008578-T1KJC3_008578-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008578-T1.utr5p1KJC3_008578-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_008578-T1.utr5p2KJC3_008578-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_008578-T1.utr5p3KJC3_008578-T1.utr5p3Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008578-T1.exon1KJC3_008578-T1.exon1Aspergillus niger KJC3exon
KJC3_008578-T1.exon2KJC3_008578-T1.exon2Aspergillus niger KJC3exon
KJC3_008578-T1.exon3KJC3_008578-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008578-T1.cdsKJC3_008578-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008578-T1.utr3p1KJC3_008578-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012337
DBxrefInterPro:IPR036397
DBxrefInterPro:IPR002156
DBxrefPFAM:PF00075
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2426415..2428725 +
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