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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2426415..2428725+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008578-T1 ID=KJC3_008578-T1|Name=KJC3_008578-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2311bp|location=Sequence derived from alignment at ch6:2426415..2428725+ (Aspergillus niger KJC3) TTCCGCCATCTACGGCTTTTGCCTATGACAAGAGCCTTTTGCCAAGAAAC
AAACTTAGCCTAATTGACGTGTCCGCCATCTGCACTCAGGATTAAGTATT
AAGGTTAGTTGGAATGCTCCCCACCATAGCACGTGGAAATTGTATCAGTC
GGAACACTTTAGGAGACCGAGTCTTCATACGTAATTACTTGCTCATCTTG
CTCAAGTGGATTGTTCCACCTTCCAGGGACCAGCTTCTCGAAAAAGTCAA
CCTCCGAATAGTGGGGACAATGTCACAGGATAGGGACTAGCGTCCGATCC
AGGAGCCCGATCGGAGGAATGACCTGCTAGCTGTCGGAATTACATGGAAG
TGGCCAACAATCGCGAATTCCTCGTGTTGTTTAGCTCAGAAGACGGGTAG
TGGTGCCAGGGACTGATATGTCCTTTGTCTGGCCTTTACTTCTTCTTTCA
GATTGCCATAGGGCTTCTCTTCATTTCAACCCTGACAAAGGAGAAGGTCT
CTCCTAGAGAGCCTACTGATACCAAGACAAGGAGCATGACAATACCTGCT
GGCTATCTCCGATAGCATCCTTCACATACTACATTCACCGCTTAACGCTG
ACTGAAAATACATCCTTCGCGCCATAGAGAGTCAAAGGCATCGGTAGAAC
TAATAATAAAGGTAGCCCCACCGAACAGTTCAGAAAGCAGCATTTAAATT
TGTTCCGCCGTGAAAGTCTCGCTGTGAAGATACCTTCCAAGGCTAACATC
GCCGCCTGCGTGGTGCTGGGTGAATAGCAACTAGACCTCAGCAGGTTCCG
TGAGAAAAGCTCGCTGTCTACGGGAGGTTCCATAAAGCGAAACTCCCATA
CAGGTTCATTAGTCAGAGGATAAGTCACGCCCATATAAACAAACCTGAGG
AGGTCTGATGCTAGCTGATAAATGCTTATTCGCAGCATAACAGTCTAGGA
ACTTCCTATTCCATCTATAACAGCCCACACCTCTGCCATTGCAATCTAAG
CGCATTCTAAGCGACTTGCCACTTGGACAATCTTTCAATAGTATCCTTTG
GCACCAAAAGTGTCTTCCCATTGCTCACCATCAAAGCCCCAGACAAAGTA
TCATTCATCATCAGAATGAAGTTCGAACGACCCCCTTCGCCCCTTGCCCT
CGCTGACGGGAGGCTTGTATGTCGCGAACACCTCCTCGTGATCTGCGCTA
TGTGCTGCGTGGATTATAGCCACACGAGAGAGGATATTGAAATGGGGGAA
GCGGGCGACACCTATAGCTATGCGAAACAGGAAATCAAAATGGGGGAAGC
TGGTGATGTTTATAATGACAACAGTTCTAACAAAGCCTCCAGAAAAGAGA
GGCATACGTCGAACCCCATGTCAAGGGAGATTGATGAGCCAAACCAAAAG
TCTTACAACAGACTCAAGGGCCATGGAAACAGATCACATGGCAAAGAAAG
CCAAATGAAACCCGTTATCCCCAAGACATTCCTTCCCCCAACCCCAGACG
CTACTCCACGATCACTCTTCAAACCTCTCGTCTTCGTATCCGAGGGCAGG
CCTTCGATACGCCGATTTGTTGGAAGAGAGAACTACTACCAATGCCTGGT
ATATACAGCTGGCGCATGCCATGACAATTGGAAGGGAGATGAGAACTATG
CTAAGGCAGGATGGTCATTCGTATACAGGCCCCAGAATCCATCACGCAAC
ATCACCGGTGGGGTTGCTGGTCGCCTCGAGATGACGGGCCCAACTAAGGT
CTACCATAGGCAGACAAGCACTCGTGCAGAACTGCGAGCTGTGATTGCGG
CCTTGAAATATCTGTCTCATGATGGGAATACGTTTGACAGCTTGGTTGTT
GCTACGGACTCGAGTTATGTTGTCAACGGTGCAACACTCTGGATCCGCAA
GTGGCTCTCGAAGGGTTGGAGAAGTGCTATTGGGAAACCAATCAAGAATA
AGGACTTATGGGAGGCCCTCCTGAAGGAAGTGAGGTGTTGGTATGAGGAG
GGAAGAGAAATCTATCTGTGGCACATTGATCGGTTGCACAATCAGGATGC
AGTTAGACTGGCTAACTGGGCGACTGTCCCAGACTCGGCTCCTATTCAGT
TCGAGGAGGATATTTCTCATTCTGGATGATCGATCATGGAGAGCCTTTAT
CTACGGTGCTATAGTAAGCCCTCCCTTCTTTAGTTGTCACTTTGGGTGCC
TTCTGGGTTAACGGAGGGCTAGTTGCGTTGGCCTCCCTCTGCCTTAATTT
TGCTTTGTTAGTAATCCAATATGGGACTACTCAGGTGCCACAATATGATA
TGAAACTCCGC back to topCoding sequence (CDS) from alignment at ch6:2426415..2428725+ >KJC3_008578-T1 ID=KJC3_008578-T1|Name=KJC3_008578-T1|organism=Aspergillus niger KJC3|type=CDS|length=1014bp|location=Sequence derived from alignment at ch6:2426415..2428725+ (Aspergillus niger KJC3) ATGAAGTTCGAACGACCCCCTTCGCCCCTTGCCCTCGCTGACGGGAGGCT TGTATGTCGCGAACACCTCCTCGTGATCTGCGCTATGTGCTGCGTGGATT ATAGCCACACGAGAGAGGATATTGAAATGGGGGAAGCGGGCGACACCTAT AGCTATGCGAAACAGGAAATCAAAATGGGGGAAGCTGGTGATGTTTATAA TGACAACAGTTCTAACAAAGCCTCCAGAAAAGAGAGGCATACGTCGAACC CCATGTCAAGGGAGATTGATGAGCCAAACCAAAAGTCTTACAACAGACTC AAGGGCCATGGAAACAGATCACATGGCAAAGAAAGCCAAATGAAACCCGT TATCCCCAAGACATTCCTTCCCCCAACCCCAGACGCTACTCCACGATCAC TCTTCAAACCTCTCGTCTTCGTATCCGAGGGCAGGCCTTCGATACGCCGA TTTGTTGGAAGAGAGAACTACTACCAATGCCTGGTATATACAGCTGGCGC ATGCCATGACAATTGGAAGGGAGATGAGAACTATGCTAAGGCAGGATGGT CATTCGTATACAGGCCCCAGAATCCATCACGCAACATCACCGGTGGGGTT GCTGGTCGCCTCGAGATGACGGGCCCAACTAAGGTCTACCATAGGCAGAC AAGCACTCGTGCAGAACTGCGAGCTGTGATTGCGGCCTTGAAATATCTGT CTCATGATGGGAATACGTTTGACAGCTTGGTTGTTGCTACGGACTCGAGT TATGTTGTCAACGGTGCAACACTCTGGATCCGCAAGTGGCTCTCGAAGGG TTGGAGAAGTGCTATTGGGAAACCAATCAAGAATAAGGACTTATGGGAGG CCCTCCTGAAGGAAGTGAGGTGTTGGTATGAGGAGGGAAGAGAAATCTAT CTGTGGCACATTGATCGGTTGCACAATCAGGATGCAGTTAGACTGGCTAA CTGGGCGACTGTCCCAGACTCGGCTCCTATTCAGTTCGAGGAGGATATTT CTCATTCTGGATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO:0004523 | RNA-DNA hybrid ribonuclease activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008578-T1.utr3p1 | KJC3_008578-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR012337 |
DBxref | InterPro:IPR036397 |
DBxref | InterPro:IPR002156 |
DBxref | PFAM:PF00075 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:2426415..2428725 + |
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