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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2477709..2479781- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008600-T1 ID=KJC3_008600-T1|Name=KJC3_008600-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2073bp|location=Sequence derived from alignment at ch6:2477709..2479781- (Aspergillus niger KJC3)
AAGCTATATAAGGGCTATCCACCAACTGGGCTCCAACAACCCAGACATTA
TTTTGTTTGACTCTTTCAGCATATTTTCAACCACTACCATCATCATGGGA
TCAGTATCCGAAGAATACCCGCCGCTTGCGGCTCTTCCCAATCTCAGTCT
ACACCCATCCATTGACGCAGAACAGCTCTCTGCATCCAAGATCGCCAACG
AATGGCTCGCTTCTTTCTCAAAGAGCCTTTCTACGGGTCGTGCAGACGCT
ATCCAAGCCCACTTCCTGGAGAAGGAATCTTGGTGGCGCGATTTTATCTC
CTTCTCATGGGACATTGCATGCCATAACGGGTCCCAGGCCATCTCCGACT
ACCTCGCCAGCTCCACAAGTGACTTTTCAGACCCGACACTGGACCAGCCA
GGCGCATTGCAACCGCACTTGGCTGACCTGGGGGGTATGCGCTTCATCCA
GGCCGGGTTTGGGTTCAAGAACAAGTCCGGCAAGGGGAGGGGTGTTCTTC
GCCTGGCGAATGTGGGGCCCGAAGAGTGGAAGGCGTGGACAGTATTCACC
GTGCTTGAGCGCCTGAATGGACAAGACGAGCTGGAAGCACAGAGGGTGAA
GGCAGCCGGAATCCAGTCAAGTGGATCTGGGCCCCAACCGACCAACGAGG
ACAGCGATCTGCAAGTCTTGGTCGTAGGAGCAGGTCAATCGGGTCTTGCT
CTAGCCGCACACCTACAGAACCTGGGCCTTAAATATCTAGTCGTCGACAA
AACTGCCCGTCCTGGAGACTCATGGCGTGCCAGGTACGCGTCAATCAAAT
CACACACCCCGAGCTACACGGACCACTATCCGTTCTTGAAATACCCCACC
AATTGGCCGCGCTACCTCGACCAAGGGCACATTGTCAAATGGATGGAGCA
CTACGGAGATCTTCTGGCTCTTAATATCAGACATGGCACGCTAGCCACGA
ATATTAACTACAACGAGTCGACCAAGCGGTACTCGGTCGACCTCCAATCC
ACCGAGGGCGGCGTACAGAACATCACCACCAAGCACCTCGTCCTTGCCAC
GGGCCTACTCAGCGATGTCCCCATCAAGCCCGCCTTCCCCGGTGAGGACA
CATTCAAGGGTCAGATCTTCCACACATCGGCGCATCAGTCCGCGAGCTTG
ATGCCCGACCTGCAGAACAAGCAAATCACAATCATCGGCTCCGGAACAAG
CGCACACGACGTCGCCCAGGACTTCGCCAGTCACGGAGCGAAATCAGTCA
CGATCGTGCAGCGCAGTCCTATTTTCGTGACGTCTCTCAAGTCCCTAGAG
GAGCTGCAGGTGAAGCTGTGGGATACGCCGGGCTTGAACACCGAGGATGC
GGATCTTCTTGGTAACTCATTCTCGACGGCCGTTGTTCGGACTCTTAGCG
TTGGGGCGTCGCAGATGATGTCCATGTTAGATAAGGACATGTTAGAGGGG
CTGGAAAAGGCCGGAATGGCCGTCAAGAGGGGCGACCAGGGCGACAGTCT
CGTTGATCATCAGCTGATCAAAGCGGGTCATTTCTACATTGACCAGGGAG
CATGCGGGATGATTATCGATGGCCGTATTCAGGTGCGGAGATGTCAGGAA
GGCGTCCGGGAATATTACCCAGACGGAATTACTCTCGCCGATGGTACTCA
GGTCGAGTCGGATGTTGTTATTCTTGCCACGGGCTTCGAACGCATAGACA
AGGCGATCGAGCGAATCGTGCCTAAGGAGATCCTGGACAGGGTGCCGGGT
GTGATATGTAGCTTGGATGAAAGCCAGGAACGGTTTGGTGTAAGTTCACA
TACTGTCCCTCATTTTGCAGTCACAGATGGCTAACAGATCGCTTGTAGGT
ATGGAGACCGACTGGCATGCCAGGATTCTGGTACATGACGGGCAGCTTTC
TCTGGTCGAGACAGTTCTCTCCTGTCCTGGCTTTGCAGATTGCCGCTGTC
GAGTGGGGGCTGAACAAGGAGTATCAATGGTAAAACGAAGGGTTATTTGT
GATATAGACTTGATAGTATTTCAGAATTTTACTGCTATGATAGGTATCCA
CGATAGATGTTTTTAAATTCAAG back to topCoding sequence (CDS) from alignment at ch6:2477709..2479781- >KJC3_008600-T1 ID=KJC3_008600-T1|Name=KJC3_008600-T1|organism=Aspergillus niger KJC3|type=CDS|length=3660bp|location=Sequence derived from alignment at ch6:2477709..2479781- (Aspergillus niger KJC3)
GTATGGAGACCGACTGGCATGCCAGGATTCTGGTACATGACGGGCAGCTT
TCTCTGGTCGAGACAGTTCTCTCCTGTCCTGGCTTTGCAGATTGCCGCTG
TCGAGTGGGGGCTGAACAAGGAGTATCAATGGTAAATGGGATCAGTATCC
GAAGAATACCCGCCGCTTGCGGCTCTTCCCAATCTCAGTCTACACCCATC
CATTGACGCAGAACAGCTCTCTGCATCCAAGATCGCCAACGAATGGCTCG
CTTCTTTCTCAAAGAGCCTTTCTACGGGTCGTGCAGACGCTATCCAAGCC
CACTTCCTGGAGAAGGAATCTTGGTGGCGCGATTTTATCTCCTTCTCATG
GGACATTGCATGCCATAACGGGTCCCAGGCCATCTCCGACTACCTCGCCA
GCTCCACAAGTGACTTTTCAGACCCGACACTGGACCAGCCAGGCGCATTG
CAACCGCACTTGGCTGACCTGGGGGGTATGCGCTTCATCCAGGCCGGGTT
TGGGTTCAAGAACAAGTCCGGCAAGGGGAGGGGTGTTCTTCGCCTGGCGA
ATGTGGGGCCCGAAGAGTGGAAGGCGTGGACAGTATTCACCGTGCTTGAG
CGCCTGAATGGACAAGACGAGCTGGAAGCACAGAGGGTGAAGGCAGCCGG
AATCCAGTCAAGTGGATCTGGGCCCCAACCGACCAACGAGGACAGCGATC
TGCAAGTCTTGGTCGTAGGAGCAGGTCAATCGGGTCTTGCTCTAGCCGCA
CACCTACAGAACCTGGGCCTTAAATATCTAGTCGTCGACAAAACTGCCCG
TCCTGGAGACTCATGGCGTGCCAGGTACGCGTCAATCAAATCACACACCC
CGAGCTACACGGACCACTATCCGTTCTTGAAATACCCCACCAATTGGCCG
CGCTACCTCGACCAAGGGCACATTGTCAAATGGATGGAGCACTACGGAGA
TCTTCTGGCTCTTAATATCAGACATGGCACGCTAGCCACGAATATTAACT
ACAACGAGTCGACCAAGCGGTACTCGGTCGACCTCCAATCCACCGAGGGC
GGCGTACAGAACATCACCACCAAGCACCTCGTCCTTGCCACGGGCCTACT
CAGCGATGTCCCCATCAAGCCCGCCTTCCCCGGTGAGGACACATTCAAGG
GTCAGATCTTCCACACATCGGCGCATCAGTCCGCGAGCTTGATGCCCGAC
CTGCAGAACAAGCAAATCACAATCATCGGCTCCGGAACAAGCGCACACGA
CGTCGCCCAGGACTTCGCCAGTCACGGAGCGAAATCAGTCACGATCGTGC
AGCGCAGTCCTATTTTCGTGACGTCTCTCAAGTCCCTAGAGGAGCTGCAG
GTGAAGCTGTGGGATACGCCGGGCTTGAACACCGAGGATGCGGATCTTCT
TGGTAACTCATTCTCGACGGCCGTTGTTCGGACTCTTAGCGTTGGGGCGT
CGCAGATGATGTCCATGTTAGATAAGGACATGTTAGAGGGGCTGGAAAAG
GCCGGAATGGCCGTCAAGAGGGGCGACCAGGGCGACAGTCTCGTTGATCA
TCAGCTGATCAAAGCGGGTCATTTCTACATTGACCAGGGAGCATGCGGGA
TGATTATCGATGGCCGTATTCAGGTGCGGAGATGTCAGGAAGGCGTCCGG
GAATATTACCCAGACGGAATTACTCTCGCCGATGGTACTCAGGTCGAGTC
GGATGTTGTTATTCTTGCCACGGGCTTCGAACGCATAGACAAGGCGATCG
AGCGAATCGTGCCTAAGGAGATCCTGGACAGGGTGCCGGGTGTGATATGT
AGCTTGGATGAAAGCCAGGAACGGTTTGGTGTATGGAGACCGACTGGCAT
GCCAGGATTCTGGTACATGACGGGCAGCTTTCTCTGGTCGAGACAGTTCT
CTCCTGTCCTGGCTTTGCAGATTGCCGCTGTCGAGTGGGGGCTGAACAAG
GAGTATCAATGGTAAATGGGATCAGTATCCGAAGAATACCCGCCGCTTGC
GGCTCTTCCCAATCTCAGTCTACACCCATCCATTGACGCAGAACAGCTCT
CTGCATCCAAGATCGCCAACGAATGGCTCGCTTCTTTCTCAAAGAGCCTT
TCTACGGGTCGTGCAGACGCTATCCAAGCCCACTTCCTGGAGAAGGAATC
TTGGTGGCGCGATTTTATCTCCTTCTCATGGGACATTGCATGCCATAACG
GGTCCCAGGCCATCTCCGACTACCTCGCCAGCTCCACAAGTGACTTTTCA
GACCCGACACTGGACCAGCCAGGCGCATTGCAACCGCACTTGGCTGACCT
GGGGGGTATGCGCTTCATCCAGGCCGGGTTTGGGTTCAAGAACAAGTCCG
GCAAGGGGAGGGGTGTTCTTCGCCTGGCGAATGTGGGGCCCGAAGAGTGG
AAGGCGTGGACAGTATTCACCGTGCTTGAGCGCCTGAATGGACAAGACGA
GCTGGAAGCACAGAGGGTGAAGGCAGCCGGAATCCAGTCAAGTGGATCTG
GGCCCCAACCGACCAACGAGGACAGCGATCTGCAAGTCTTGGTCGTAGGA
GCAGGTCAATCGGGTCTTGCTCTAGCCGCACACCTACAGAACCTGGGCCT
TAAATATCTAGTCGTCGACAAAACTGCCCGTCCTGGAGACTCATGGCGTG
CCAGGTACGCGTCAATCAAATCACACACCCCGAGCTACACGGACCACTAT
CCGTTCTTGAAATACCCCACCAATTGGCCGCGCTACCTCGACCAAGGGCA
CATTGTCAAATGGATGGAGCACTACGGAGATCTTCTGGCTCTTAATATCA
GACATGGCACGCTAGCCACGAATATTAACTACAACGAGTCGACCAAGCGG
TACTCGGTCGACCTCCAATCCACCGAGGGCGGCGTACAGAACATCACCAC
CAAGCACCTCGTCCTTGCCACGGGCCTACTCAGCGATGTCCCCATCAAGC
CCGCCTTCCCCGGTGAGGACACATTCAAGGGTCAGATCTTCCACACATCG
GCGCATCAGTCCGCGAGCTTGATGCCCGACCTGCAGAACAAGCAAATCAC
AATCATCGGCTCCGGAACAAGCGCACACGACGTCGCCCAGGACTTCGCCA
GTCACGGAGCGAAATCAGTCACGATCGTGCAGCGCAGTCCTATTTTCGTG
ACGTCTCTCAAGTCCCTAGAGGAGCTGCAGGTGAAGCTGTGGGATACGCC
GGGCTTGAACACCGAGGATGCGGATCTTCTTGGTAACTCATTCTCGACGG
CCGTTGTTCGGACTCTTAGCGTTGGGGCGTCGCAGATGATGTCCATGTTA
GATAAGGACATGTTAGAGGGGCTGGAAAAGGCCGGAATGGCCGTCAAGAG
GGGCGACCAGGGCGACAGTCTCGTTGATCATCAGCTGATCAAAGCGGGTC
ATTTCTACATTGACCAGGGAGCATGCGGGATGATTATCGATGGCCGTATT
CAGGTGCGGAGATGTCAGGAAGGCGTCCGGGAATATTACCCAGACGGAAT
TACTCTCGCCGATGGTACTCAGGTCGAGTCGGATGTTGTTATTCTTGCCA
CGGGCTTCGAACGCATAGACAAGGCGATCGAGCGAATCGTGCCTAAGGAG
ATCCTGGACAGGGTGCCGGGTGTGATATGTAGCTTGGATGAAAGCCAGGA
ACGGTTTGGT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008600-T1.utr3p1 | KJC3_008600-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008600-T1.utr5p1 | KJC3_008600-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036188 |
| DBxref | PFAM:PF13738 |
| DBxref | PFAM:PF07992 |
| DBxref | PFAM:PF00743 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2477709..2479781 - |
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