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KJC3_008617-T1, KJC3_008617-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008617-T1
Unique NameKJC3_008617-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2517206..2518155-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008617-T1 ID=KJC3_008617-T1|Name=KJC3_008617-T1|organism=Aspergillus niger KJC3|type=mRNA|length=950bp|location=Sequence derived from alignment at ch6:2517206..2518155- (Aspergillus niger KJC3)
ATCCAGACCCCAATACCACCACCACACCTCACCAATCACCCCCTTCCACC CTCACACACGAACAAAATGTCCTCCCTCAACCAAGACCAAATCAAAACCC TCGAACAATCCCGCCAACGCCTCATCCAACTCACCCATTCCCTCGCCTCT CTCATAACCAGTCTCAATCAAAGCGATCCTCTCCCCTCCTGGTATATATA CCCCCCCAATGCCCACTCCATCCAGCCCACCCGGGTCAACCTTACTGATA TGATGATACGGACAGGACATCCCTCCAATCCCAAGCAACCATCATCTCCA ACAACCTCCTCACCATCTCCGACCACCTCTCCGATAACCGCGACCTCCTA TCCAACATCGTCGCCTACCCCGACGCATCTTATCCGTCGCGCGTCCCCGC TAATAACGTCGCCCTCGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCG TTGAGGATTGGGTAGCGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCT TCTGATGCTGGAGCCGGAGCACTGGGACAATACCAGACCAGCAGTGGACA GAGATTATTGAGTGATGATGCGATTGCTGAATTGTGGGATTGGGCGCCTG TCGCGGCGAATGAGGAGGCCAGGAAGAGGAATTGGGGCGGCAATTATACG TTGGAGGAGCGGGAGATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAG GGTGTTGGAGGATGATGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAG AGGGCGAGGCGGATGAGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGG GCTGGAGCTGGGCTGGAGTTCGATATTGCTGCTGCGAATACTGGGTCTGG GGCTAATGCTGGTGCGGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGG ATGAGATTCTGAGGTTCATGACTACGGGGGCTGTGCCGGGACAGCGGTGA
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Coding sequence (CDS) from alignment at ch6:2517206..2518155-

>KJC3_008617-T1 ID=KJC3_008617-T1|Name=KJC3_008617-T1|organism=Aspergillus niger KJC3|type=CDS|length=1620bp|location=Sequence derived from alignment at ch6:2517206..2518155- (Aspergillus niger KJC3)
GACATCCCTCCAATCCCAAGCAACCATCATCTCCAACAACCTCCTCACCA
TCTCCGACCACCTCTCCGATAACCGCGACCTCCTATCCAACATCGTCGCC
TACCCCGACGCATCTTATCCGTCGCGCGTCCCCGCTAATAACGTCGCCCT
CGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCGTTGAGGATTGGGTAG
CGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCTTCTGATGCTGGAGCC
GGAGCACTGGGACAATACCAGACCAGCAGTGGACAGAGATTATTGAGTGA
TGATGCGATTGCTGAATTGTGGGATTGGGCGCCTGTCGCGGCGAATGAGG
AGGCCAGGAAGAGGAATTGGGGCGGCAATTATACGTTGGAGGAGCGGGAG
ATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAGGGTGTTGGAGGATGA
TGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAGAGGGCGAGGCGGATG
AGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGGGCTGGAGCTGGGCTG
GAGTTCGATATTGCTGCTGCGAATACTGGGTCTGGGGCTAATGCTGGTGC
GGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGGATGAGATTCTGAGGT
TCATGACTACGGGGGCTGTGCCGGGACAGCGGTGAATGTCCTCCCTCAAC
CAAGACCAAATCAAAACCCTCGAACAATCCCGCCAACGCCTCATCCAACT
CACCCATTCCCTCGCCTCTCTCATAACCAGTCTCAATCAAAGCGATCCTC
TCCCCTCCTGGACATCCCTCCAATCCCAAGCAACCATCATCTCCAACAAC
CTCCTCACCATCTCCGACCACCTCTCCGATAACCGCGACCTCCTATCCAA
CATCGTCGCCTACCCCGACGCATCTTATCCGTCGCGCGTCCCCGCTAATA
ACGTCGCCCTCGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCGTTGAG
GATTGGGTAGCGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCTTCTGA
TGCTGGAGCCGGAGCACTGGGACAATACCAGACCAGCAGTGGACAGAGAT
TATTGAGTGATGATGCGATTGCTGAATTGTGGGATTGGGCGCCTGTCGCG
GCGAATGAGGAGGCCAGGAAGAGGAATTGGGGCGGCAATTATACGTTGGA
GGAGCGGGAGATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAGGGTGT
TGGAGGATGATGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAGAGGGC
GAGGCGGATGAGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGGGCTGG
AGCTGGGCTGGAGTTCGATATTGCTGCTGCGAATACTGGGTCTGGGGCTA
ATGCTGGTGCGGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGGATGAG
ATTCTGAGGTTCATGACTACGGGGGCTGTGCCGGGACAGCGGTGAATGTC
CTCCCTCAACCAAGACCAAATCAAAACCCTCGAACAATCCCGCCAACGCC
TCATCCAACTCACCCATTCCCTCGCCTCTCTCATAACCAGTCTCAATCAA
AGCGATCCTCTCCCCTCCTG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MED8KJC3_008617Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008617-T1KJC3_008617-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008617-T1.cdsKJC3_008617-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008617-T1.exon2KJC3_008617-T1.exon2Aspergillus niger KJC3exon
KJC3_008617-T1.exon1KJC3_008617-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008617-T1.utr5p1KJC3_008617-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR019364
DBxrefPFAM:PF10232
Productmediator of RNA polymerase II transcription subunit 8
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2517206..2518155 -