|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2517206..2518155- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008617-T1 ID=KJC3_008617-T1|Name=KJC3_008617-T1|organism=Aspergillus niger KJC3|type=mRNA|length=950bp|location=Sequence derived from alignment at ch6:2517206..2518155- (Aspergillus niger KJC3)
ATCCAGACCCCAATACCACCACCACACCTCACCAATCACCCCCTTCCACC
CTCACACACGAACAAAATGTCCTCCCTCAACCAAGACCAAATCAAAACCC
TCGAACAATCCCGCCAACGCCTCATCCAACTCACCCATTCCCTCGCCTCT
CTCATAACCAGTCTCAATCAAAGCGATCCTCTCCCCTCCTGGTATATATA
CCCCCCCAATGCCCACTCCATCCAGCCCACCCGGGTCAACCTTACTGATA
TGATGATACGGACAGGACATCCCTCCAATCCCAAGCAACCATCATCTCCA
ACAACCTCCTCACCATCTCCGACCACCTCTCCGATAACCGCGACCTCCTA
TCCAACATCGTCGCCTACCCCGACGCATCTTATCCGTCGCGCGTCCCCGC
TAATAACGTCGCCCTCGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCG
TTGAGGATTGGGTAGCGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCT
TCTGATGCTGGAGCCGGAGCACTGGGACAATACCAGACCAGCAGTGGACA
GAGATTATTGAGTGATGATGCGATTGCTGAATTGTGGGATTGGGCGCCTG
TCGCGGCGAATGAGGAGGCCAGGAAGAGGAATTGGGGCGGCAATTATACG
TTGGAGGAGCGGGAGATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAG
GGTGTTGGAGGATGATGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAG
AGGGCGAGGCGGATGAGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGG
GCTGGAGCTGGGCTGGAGTTCGATATTGCTGCTGCGAATACTGGGTCTGG
GGCTAATGCTGGTGCGGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGG
ATGAGATTCTGAGGTTCATGACTACGGGGGCTGTGCCGGGACAGCGGTGA
back to topCoding sequence (CDS) from alignment at ch6:2517206..2518155- >KJC3_008617-T1 ID=KJC3_008617-T1|Name=KJC3_008617-T1|organism=Aspergillus niger KJC3|type=CDS|length=1620bp|location=Sequence derived from alignment at ch6:2517206..2518155- (Aspergillus niger KJC3)
GACATCCCTCCAATCCCAAGCAACCATCATCTCCAACAACCTCCTCACCA
TCTCCGACCACCTCTCCGATAACCGCGACCTCCTATCCAACATCGTCGCC
TACCCCGACGCATCTTATCCGTCGCGCGTCCCCGCTAATAACGTCGCCCT
CGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCGTTGAGGATTGGGTAG
CGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCTTCTGATGCTGGAGCC
GGAGCACTGGGACAATACCAGACCAGCAGTGGACAGAGATTATTGAGTGA
TGATGCGATTGCTGAATTGTGGGATTGGGCGCCTGTCGCGGCGAATGAGG
AGGCCAGGAAGAGGAATTGGGGCGGCAATTATACGTTGGAGGAGCGGGAG
ATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAGGGTGTTGGAGGATGA
TGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAGAGGGCGAGGCGGATG
AGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGGGCTGGAGCTGGGCTG
GAGTTCGATATTGCTGCTGCGAATACTGGGTCTGGGGCTAATGCTGGTGC
GGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGGATGAGATTCTGAGGT
TCATGACTACGGGGGCTGTGCCGGGACAGCGGTGAATGTCCTCCCTCAAC
CAAGACCAAATCAAAACCCTCGAACAATCCCGCCAACGCCTCATCCAACT
CACCCATTCCCTCGCCTCTCTCATAACCAGTCTCAATCAAAGCGATCCTC
TCCCCTCCTGGACATCCCTCCAATCCCAAGCAACCATCATCTCCAACAAC
CTCCTCACCATCTCCGACCACCTCTCCGATAACCGCGACCTCCTATCCAA
CATCGTCGCCTACCCCGACGCATCTTATCCGTCGCGCGTCCCCGCTAATA
ACGTCGCCCTCGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCGTTGAG
GATTGGGTAGCGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCTTCTGA
TGCTGGAGCCGGAGCACTGGGACAATACCAGACCAGCAGTGGACAGAGAT
TATTGAGTGATGATGCGATTGCTGAATTGTGGGATTGGGCGCCTGTCGCG
GCGAATGAGGAGGCCAGGAAGAGGAATTGGGGCGGCAATTATACGTTGGA
GGAGCGGGAGATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAGGGTGT
TGGAGGATGATGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAGAGGGC
GAGGCGGATGAGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGGGCTGG
AGCTGGGCTGGAGTTCGATATTGCTGCTGCGAATACTGGGTCTGGGGCTA
ATGCTGGTGCGGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGGATGAG
ATTCTGAGGTTCATGACTACGGGGGCTGTGCCGGGACAGCGGTGAATGTC
CTCCCTCAACCAAGACCAAATCAAAACCCTCGAACAATCCCGCCAACGCC
TCATCCAACTCACCCATTCCCTCGCCTCTCTCATAACCAGTCTCAATCAA
AGCGATCCTCTCCCCTCCTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008617-T1.utr5p1 | KJC3_008617-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR019364 |
| DBxref | PFAM:PF10232 |
| Product | mediator of RNA polymerase II transcription subunit 8 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2517206..2518155 - |
|
