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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2517206..2518155- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008617-T1 ID=KJC3_008617-T1|Name=KJC3_008617-T1|organism=Aspergillus niger KJC3|type=mRNA|length=950bp|location=Sequence derived from alignment at ch6:2517206..2518155- (Aspergillus niger KJC3) ATCCAGACCCCAATACCACCACCACACCTCACCAATCACCCCCTTCCACC
CTCACACACGAACAAAATGTCCTCCCTCAACCAAGACCAAATCAAAACCC
TCGAACAATCCCGCCAACGCCTCATCCAACTCACCCATTCCCTCGCCTCT
CTCATAACCAGTCTCAATCAAAGCGATCCTCTCCCCTCCTGGTATATATA
CCCCCCCAATGCCCACTCCATCCAGCCCACCCGGGTCAACCTTACTGATA
TGATGATACGGACAGGACATCCCTCCAATCCCAAGCAACCATCATCTCCA
ACAACCTCCTCACCATCTCCGACCACCTCTCCGATAACCGCGACCTCCTA
TCCAACATCGTCGCCTACCCCGACGCATCTTATCCGTCGCGCGTCCCCGC
TAATAACGTCGCCCTCGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCG
TTGAGGATTGGGTAGCGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCT
TCTGATGCTGGAGCCGGAGCACTGGGACAATACCAGACCAGCAGTGGACA
GAGATTATTGAGTGATGATGCGATTGCTGAATTGTGGGATTGGGCGCCTG
TCGCGGCGAATGAGGAGGCCAGGAAGAGGAATTGGGGCGGCAATTATACG
TTGGAGGAGCGGGAGATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAG
GGTGTTGGAGGATGATGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAG
AGGGCGAGGCGGATGAGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGG
GCTGGAGCTGGGCTGGAGTTCGATATTGCTGCTGCGAATACTGGGTCTGG
GGCTAATGCTGGTGCGGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGG
ATGAGATTCTGAGGTTCATGACTACGGGGGCTGTGCCGGGACAGCGGTGA
back to topCoding sequence (CDS) from alignment at ch6:2517206..2518155- >KJC3_008617-T1 ID=KJC3_008617-T1|Name=KJC3_008617-T1|organism=Aspergillus niger KJC3|type=CDS|length=1620bp|location=Sequence derived from alignment at ch6:2517206..2518155- (Aspergillus niger KJC3) GACATCCCTCCAATCCCAAGCAACCATCATCTCCAACAACCTCCTCACCA TCTCCGACCACCTCTCCGATAACCGCGACCTCCTATCCAACATCGTCGCC TACCCCGACGCATCTTATCCGTCGCGCGTCCCCGCTAATAACGTCGCCCT CGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCGTTGAGGATTGGGTAG CGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCTTCTGATGCTGGAGCC GGAGCACTGGGACAATACCAGACCAGCAGTGGACAGAGATTATTGAGTGA TGATGCGATTGCTGAATTGTGGGATTGGGCGCCTGTCGCGGCGAATGAGG AGGCCAGGAAGAGGAATTGGGGCGGCAATTATACGTTGGAGGAGCGGGAG ATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAGGGTGTTGGAGGATGA TGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAGAGGGCGAGGCGGATG AGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGGGCTGGAGCTGGGCTG GAGTTCGATATTGCTGCTGCGAATACTGGGTCTGGGGCTAATGCTGGTGC GGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGGATGAGATTCTGAGGT TCATGACTACGGGGGCTGTGCCGGGACAGCGGTGAATGTCCTCCCTCAAC CAAGACCAAATCAAAACCCTCGAACAATCCCGCCAACGCCTCATCCAACT CACCCATTCCCTCGCCTCTCTCATAACCAGTCTCAATCAAAGCGATCCTC TCCCCTCCTGGACATCCCTCCAATCCCAAGCAACCATCATCTCCAACAAC CTCCTCACCATCTCCGACCACCTCTCCGATAACCGCGACCTCCTATCCAA CATCGTCGCCTACCCCGACGCATCTTATCCGTCGCGCGTCCCCGCTAATA ACGTCGCCCTCGAGCAAGTCCTGCGCACGAAACTAGATCCCCGCGTTGAG GATTGGGTAGCGCGCGGTCGTCGCGCCGGGGCGCCAACTACTTCTTCTGA TGCTGGAGCCGGAGCACTGGGACAATACCAGACCAGCAGTGGACAGAGAT TATTGAGTGATGATGCGATTGCTGAATTGTGGGATTGGGCGCCTGTCGCG GCGAATGAGGAGGCCAGGAAGAGGAATTGGGGCGGCAATTATACGTTGGA GGAGCGGGAGATGGGGATTGAGAATGTAGTTACGGGGTTGAGCAGGGTGT TGGAGGATGATGATGAGGAGGATGAGAGTGATAGTGAAGAGGGAGAGGGC GAGGCGGATGAGATGGAGGTTGTCGGGGCAAGGAGAAGGTCCGGGGCTGG AGCTGGGCTGGAGTTCGATATTGCTGCTGCGAATACTGGGTCTGGGGCTA ATGCTGGTGCGGGGGCTAAGGTGGTTGCGCCTGTGGTGCCATTGGATGAG ATTCTGAGGTTCATGACTACGGGGGCTGTGCCGGGACAGCGGTGAATGTC CTCCCTCAACCAAGACCAAATCAAAACCCTCGAACAATCCCGCCAACGCC TCATCCAACTCACCCATTCCCTCGCCTCTCTCATAACCAGTCTCAATCAA AGCGATCCTCTCCCCTCCTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0016592 | mediator complex |
Vocabulary: Molecular Function
Term | Definition |
GO:0003712 | transcription coregulator activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006357 | regulation of transcription by RNA polymerase II |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008617-T1.utr5p1 | KJC3_008617-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR019364 |
DBxref | PFAM:PF10232 |
Product | mediator of RNA polymerase II transcription subunit 8 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:2517206..2518155 - |
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