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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2761213..2763333+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008698-T1 ID=KJC3_008698-T1|Name=KJC3_008698-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2121bp|location=Sequence derived from alignment at ch6:2761213..2763333+ (Aspergillus niger KJC3)
GCTTCGCTGGACTCGTGGCGTTTGGTGATCCCCCAATACGAACTTCACCT
ATCTGTCTTACGCCCCGGAGCTCAGTCTGCAAAGGACCTACATGTTGGGG
CCGCAATATGTCAACCTTGGTATACCCTTCTCTTACACCATTTAGGCATC
CCTTGCGATACGACCCTCCCAGTCTACATGCGGCCTCTCCCCACTCGTGA
TGGGCAAGCCAAGCGGAGGTTGTGGTACGTGTCGTGCGCGAAGAGTCAAG
GTAAGTAGTATGGCCTTGTCGGTGATTAGCCGTTCTATACCGTATCAGAA
ACATCGGCGCTTTCCACTTGTTCCATTAAATCCTGATCACAGCTCATAGT
GCGATGAAACCAGACCTGTCTGCCGTCGATGTAGGAAAGCAAGGCGGACT
TGCTCCGGTTATCGAGACCCGCACTCGGTATGGTTTAGGGACGAGAGCGA
TGCAGTAGCCCGAAGAGTCAAGGGATCTGCCACTTTAGACACCGGATCTT
CATCCGCAGAATCTCCAATTCTGACGCTAGCCAGAAGAAATACTTCCTCT
GAATACTACCCTGGACAACACACCCTGCGGTTCCCCCTAGCGATAGTTAA
CTTTGCGTTGGATCATACTTTCCAAGCCACATGCTTTTTCCTGGACGCTT
ACACGTGGTTCAATGCTTCTAAAATAGTAGAAACCTCATTCAAACATGGG
GCCGGTCCTGCGGAGTCCCTTGGCCAGAAAGCTATGATGGCTAGCATTGC
ATCCGTGGGATTAGCGAATCTTGCTAGTATGCAGAGGTCCTCATCAATGC
GGTTGTCGGCTCGGCACGAGTATACTACGGCTCTACAGCTGACGAACGCA
GCTTTGTGCGACCCGAATCTGGTTACGGCAGATACAACGCTGACCGCGAT
CGTTTGTTTATCATTATTCGAGGTGAGTTTGTCCATGACGAACCACAGAG
TATATATCTCACTGACCTTCTAAGATTATTGCTTGCCACAAAAATGAGAG
CCTGGATTCCTGGATCGAACACTCGCAGGGGGTGGCAACTGTCCTTGAAC
TTCGCGGCAGAGATCAGCTTCGGCGCGAAGGCGGGTTCTGGATGTTTCAA
GCCCTCCGAAATGAGGTGGTGGGTGCTATCCAAGTCTCTTGACTCAGAAC
CTGACTAATGGTCCCTCCAGGTCCTTGGTTGCCTACAAAAGAAGACGAGG
CTCCCTTCTGTTCTGGTCGATATGCCTGATCAAGTAGCTGCCGACTTGCC
GCCGTATCCTTTCCCACCTGACGGGGATCGACTAGTGAAGATCATGGCTA
AATTCACCGGGCTTCAGGCCGATGTCAGAGAAGGAATCCTCTTGGACAGC
AGTGAGATTGTAAAGATGGCCATGGCTATAGACTTGGAGTTAGGGCATTT
CGCTAGTCATGCCTCAGCCGATTTCACCTACAAGGTAGAGACACAACCCG
GTAGTGTGACATCCTGCGAGCACGACGAGGGCAATTTCTGCCATTACCAA
GGCACCTATCACATCTATCAATCCATCTGGTCCTGCAATATCTGGAACAA
TTATCGCTACACCCGAATTCTCGTTAACAGCATGATCCTTACCCATCTGC
GATCAATGGCCTCGTGTGGCCATCAAGTTCTGGACTATGGCCTCTTCAAG
GACCATTGCATTCGCATCCGTGATCTGATGAGGCAGCTAGCAACGGACAT
CTGCTGCTCTATCCCATTCAAGTTCGGAGTTGCTGGCTTTGATAAAAAGG
ATGTCTTTGATTCCCTGCATACCCACGCGGGCACTGGGTTCACTTTGCTT
CTGCCGCTGGCCATGGCTGCACTTGTTGGCGGAGTTTCCAGCCCGATGCA
TAACTGGGCCATGAGATGCTTCCACGTCATTGGTCGGGGGATGGGCATTG
GTACTGCTTCAACCCTCGTCACAGTCTTGGGGAATGAACCGGGTGGGCTA
CATTGGATAGATGCGATGGAGTCTGGCCACACCGTTTGTTCACGGGCCGT
GTTACAGTAAACTTCCTCAAGGCGCCTCCGTTGGCGTGGGGGATTAGTCT
CTATGGTTGATGTGTACATGTAGTATATTTATGAATAGATTGAAACGGAT
ATATATATATATACGAACAAC back to topCoding sequence (CDS) from alignment at ch6:2761213..2763333+ >KJC3_008698-T1 ID=KJC3_008698-T1|Name=KJC3_008698-T1|organism=Aspergillus niger KJC3|type=CDS|length=7665bp|location=Sequence derived from alignment at ch6:2761213..2763333+ (Aspergillus niger KJC3)
ATGGGCAAGCCAAGCGGAGGTTGTGGTACGTGTCGTGCGCGAAGAGTCAA
GTGCGATGAAACCAGACCTGTCTGCCGTCGATGTAGGAAAGCAAGGCGGA
CTTGCTCCGGTTATCGAGACCCGCACTCGGTATGGTTTAGGGACGAGAGC
GATGCAGTAGCCCGAAGAGTCAAGGGATCTGCCACTTTAGACACCGGATC
TTCATCCGCAGAATCTCCAATTCTGACGCTAGCCAGAAGAAATACTTCCT
CTGAATACTACCCTGGACAACACACCCTGCGGTTCCCCCTAGCGATAGTT
AACTTTGCGTTGGATCATACTTTCCAAGCCACATGCTTTTTCCTGGACGC
TTACACGTGGTTCAATGCTTCTAAAATAGTAGAAACCTCATTCAAACATG
GGGCCGGTCCTGCGGAGTCCCTTGGCCAGAAAGCTATGATGGCTAGCATT
GCATCCGTGGGATTAGCGAATCTTGCTACTTTGTGCGACCCGAATCTGGT
TACGGCAGATACAACGCTGACCGCGATCGTTTGTTTATCATTATTCGAGA
TTATTGCTTGCCACAAAAATGAGAGCCTGGATTCCTGGATCGAACACTCG
CAGGGGGTGGCAACTGTCCTTGAACTTCGCGGCAGAGATCAGCTTCGGCG
CGAAGGCGGGTTCTGGATGTTTCAAGCCCTCCGAAATGAGGTGGTCCTTG
GTTGCCTACAAAAGAAGACGAGGCTCCCTTCTGTTCTGGTCGATATGCCT
GATCAAGTAGCTGCCGACTTGCCGCCGTATCCTTTCCCACCTGACGGGGA
TCGACTAGTGAAGATCATGGCTAAATTCACCGGGCTTCAGGCCGATGTCA
GAGAAGGAATCCTCTTGGACAGCAGTGAGATTGTAAAGATGGCCATGGCT
ATAGACTTGGAGTTAGGGCATTTCGCTAGTCATGCCTCAGCCGATTTCAC
CTACAAGGTAGAGACACAACCCGGTAGTGTGACATCCTGCGAGCACGACG
AGGGCAATTTCTGCCATTACCAAGGCACCTATCACATCTATCAATCCATC
TGGTCCTGCAATATCTGGAACAATTATCGCTACACCCGAATTCTCGTTAA
CAGCATGATCCTTACCCATCTGCGATCAATGGCCTCGTGTGGCCATCAAG
TTCTGGACTATGGCCTCTTCAAGGACCATTGCATTCGCATCCGTGATCTG
ATGAGGCAGCTAGCAACGGACATCTGCTGCTCTATCCCATTCAAGTTCGG
AGTTGCTGGCTTTGATAAAAAGGATGTCTTTGATTCCCTGCATACCCACG
CGGGCACTGGGTTCACTTTGCTTCTGCCGCTGGCCATGGCTGCACTTGTT
GGCGGAGTTTCCAGCCCGATGCATAACTGGGCCATGAGATGCTTCCACGT
CATTGGTCGGGGGATGGGCATTGGTACTGCTTCAACCCTCGTCACAGTCT
TGGGGAATGAACCGGGTGGGCTACATTGGATAGATGCGATGGAGTCTGGC
CACACCGTTTGTTCACGGGCCGTGTTACAGTAAATGGGCAAGCCAAGCGG
AGGTTGTGGTACGTGTCGTGCGCGAAGAGTCAAGTGCGATGAAACCAGAC
CTGTCTGCCGTCGATGTAGGAAAGCAAGGCGGACTTGCTCCGGTTATCGA
GACCCGCACTCGGTATGGTTTAGGGACGAGAGCGATGCAGTAGCCCGAAG
AGTCAAGGGATCTGCCACTTTAGACACCGGATCTTCATCCGCAGAATCTC
CAATTCTGACGCTAGCCAGAAGAAATACTTCCTCTGAATACTACCCTGGA
CAACACACCCTGCGGTTCCCCCTAGCGATAGTTAACTTTGCGTTGGATCA
TACTTTCCAAGCCACATGCTTTTTCCTGGACGCTTACACGTGGTTCAATG
CTTCTAAAATAGTAGAAACCTCATTCAAACATGGGGCCGGTCCTGCGGAG
TCCCTTGGCCAGAAAGCTATGATGGCTAGCATTGCATCCGTGGGATTAGC
GAATCTTGCTACTTTGTGCGACCCGAATCTGGTTACGGCAGATACAACGC
TGACCGCGATCGTTTGTTTATCATTATTCGAGATTATTGCTTGCCACAAA
AATGAGAGCCTGGATTCCTGGATCGAACACTCGCAGGGGGTGGCAACTGT
CCTTGAACTTCGCGGCAGAGATCAGCTTCGGCGCGAAGGCGGGTTCTGGA
TGTTTCAAGCCCTCCGAAATGAGGTGGTCCTTGGTTGCCTACAAAAGAAG
ACGAGGCTCCCTTCTGTTCTGGTCGATATGCCTGATCAAGTAGCTGCCGA
CTTGCCGCCGTATCCTTTCCCACCTGACGGGGATCGACTAGTGAAGATCA
TGGCTAAATTCACCGGGCTTCAGGCCGATGTCAGAGAAGGAATCCTCTTG
GACAGCAGTGAGATTGTAAAGATGGCCATGGCTATAGACTTGGAGTTAGG
GCATTTCGCTAGTCATGCCTCAGCCGATTTCACCTACAAGGTAGAGACAC
AACCCGGTAGTGTGACATCCTGCGAGCACGACGAGGGCAATTTCTGCCAT
TACCAAGGCACCTATCACATCTATCAATCCATCTGGTCCTGCAATATCTG
GAACAATTATCGCTACACCCGAATTCTCGTTAACAGCATGATCCTTACCC
ATCTGCGATCAATGGCCTCGTGTGGCCATCAAGTTCTGGACTATGGCCTC
TTCAAGGACCATTGCATTCGCATCCGTGATCTGATGAGGCAGCTAGCAAC
GGACATCTGCTGCTCTATCCCATTCAAGTTCGGAGTTGCTGGCTTTGATA
AAAAGGATGTCTTTGATTCCCTGCATACCCACGCGGGCACTGGGTTCACT
TTGCTTCTGCCGCTGGCCATGGCTGCACTTGTTGGCGGAGTTTCCAGCCC
GATGCATAACTGGGCCATGAGATGCTTCCACGTCATTGGTCGGGGGATGG
GCATTGGTACTGCTTCAACCCTCGTCACAGTCTTGGGGAATGAACCGGGT
GGGCTACATTGGATAGATGCGATGGAGTCTGGCCACACCGTTTGTTCACG
GGCCGTGTTACAGTAAATGGGCAAGCCAAGCGGAGGTTGTGGTACGTGTC
GTGCGCGAAGAGTCAAGTGCGATGAAACCAGACCTGTCTGCCGTCGATGT
AGGAAAGCAAGGCGGACTTGCTCCGGTTATCGAGACCCGCACTCGGTATG
GTTTAGGGACGAGAGCGATGCAGTAGCCCGAAGAGTCAAGGGATCTGCCA
CTTTAGACACCGGATCTTCATCCGCAGAATCTCCAATTCTGACGCTAGCC
AGAAGAAATACTTCCTCTGAATACTACCCTGGACAACACACCCTGCGGTT
CCCCCTAGCGATAGTTAACTTTGCGTTGGATCATACTTTCCAAGCCACAT
GCTTTTTCCTGGACGCTTACACGTGGTTCAATGCTTCTAAAATAGTAGAA
ACCTCATTCAAACATGGGGCCGGTCCTGCGGAGTCCCTTGGCCAGAAAGC
TATGATGGCTAGCATTGCATCCGTGGGATTAGCGAATCTTGCTACTTTGT
GCGACCCGAATCTGGTTACGGCAGATACAACGCTGACCGCGATCGTTTGT
TTATCATTATTCGAGATTATTGCTTGCCACAAAAATGAGAGCCTGGATTC
CTGGATCGAACACTCGCAGGGGGTGGCAACTGTCCTTGAACTTCGCGGCA
GAGATCAGCTTCGGCGCGAAGGCGGGTTCTGGATGTTTCAAGCCCTCCGA
AATGAGGTGGTCCTTGGTTGCCTACAAAAGAAGACGAGGCTCCCTTCTGT
TCTGGTCGATATGCCTGATCAAGTAGCTGCCGACTTGCCGCCGTATCCTT
TCCCACCTGACGGGGATCGACTAGTGAAGATCATGGCTAAATTCACCGGG
CTTCAGGCCGATGTCAGAGAAGGAATCCTCTTGGACAGCAGTGAGATTGT
AAAGATGGCCATGGCTATAGACTTGGAGTTAGGGCATTTCGCTAGTCATG
CCTCAGCCGATTTCACCTACAAGGTAGAGACACAACCCGGTAGTGTGACA
TCCTGCGAGCACGACGAGGGCAATTTCTGCCATTACCAAGGCACCTATCA
CATCTATCAATCCATCTGGTCCTGCAATATCTGGAACAATTATCGCTACA
CCCGAATTCTCGTTAACAGCATGATCCTTACCCATCTGCGATCAATGGCC
TCGTGTGGCCATCAAGTTCTGGACTATGGCCTCTTCAAGGACCATTGCAT
TCGCATCCGTGATCTGATGAGGCAGCTAGCAACGGACATCTGCTGCTCTA
TCCCATTCAAGTTCGGAGTTGCTGGCTTTGATAAAAAGGATGTCTTTGAT
TCCCTGCATACCCACGCGGGCACTGGGTTCACTTTGCTTCTGCCGCTGGC
CATGGCTGCACTTGTTGGCGGAGTTTCCAGCCCGATGCATAACTGGGCCA
TGAGATGCTTCCACGTCATTGGTCGGGGGATGGGCATTGGTACTGCTTCA
ACCCTCGTCACAGTCTTGGGGAATGAACCGGGTGGGCTACATTGGATAGA
TGCGATGGAGTCTGGCCACACCGTTTGTTCACGGGCCGTGTTACAGTAAA
TGGGCAAGCCAAGCGGAGGTTGTGGTACGTGTCGTGCGCGAAGAGTCAAG
TGCGATGAAACCAGACCTGTCTGCCGTCGATGTAGGAAAGCAAGGCGGAC
TTGCTCCGGTTATCGAGACCCGCACTCGGTATGGTTTAGGGACGAGAGCG
ATGCAGTAGCCCGAAGAGTCAAGGGATCTGCCACTTTAGACACCGGATCT
TCATCCGCAGAATCTCCAATTCTGACGCTAGCCAGAAGAAATACTTCCTC
TGAATACTACCCTGGACAACACACCCTGCGGTTCCCCCTAGCGATAGTTA
ACTTTGCGTTGGATCATACTTTCCAAGCCACATGCTTTTTCCTGGACGCT
TACACGTGGTTCAATGCTTCTAAAATAGTAGAAACCTCATTCAAACATGG
GGCCGGTCCTGCGGAGTCCCTTGGCCAGAAAGCTATGATGGCTAGCATTG
CATCCGTGGGATTAGCGAATCTTGCTACTTTGTGCGACCCGAATCTGGTT
ACGGCAGATACAACGCTGACCGCGATCGTTTGTTTATCATTATTCGAGAT
TATTGCTTGCCACAAAAATGAGAGCCTGGATTCCTGGATCGAACACTCGC
AGGGGGTGGCAACTGTCCTTGAACTTCGCGGCAGAGATCAGCTTCGGCGC
GAAGGCGGGTTCTGGATGTTTCAAGCCCTCCGAAATGAGGTGGTCCTTGG
TTGCCTACAAAAGAAGACGAGGCTCCCTTCTGTTCTGGTCGATATGCCTG
ATCAAGTAGCTGCCGACTTGCCGCCGTATCCTTTCCCACCTGACGGGGAT
CGACTAGTGAAGATCATGGCTAAATTCACCGGGCTTCAGGCCGATGTCAG
AGAAGGAATCCTCTTGGACAGCAGTGAGATTGTAAAGATGGCCATGGCTA
TAGACTTGGAGTTAGGGCATTTCGCTAGTCATGCCTCAGCCGATTTCACC
TACAAGGTAGAGACACAACCCGGTAGTGTGACATCCTGCGAGCACGACGA
GGGCAATTTCTGCCATTACCAAGGCACCTATCACATCTATCAATCCATCT
GGTCCTGCAATATCTGGAACAATTATCGCTACACCCGAATTCTCGTTAAC
AGCATGATCCTTACCCATCTGCGATCAATGGCCTCGTGTGGCCATCAAGT
TCTGGACTATGGCCTCTTCAAGGACCATTGCATTCGCATCCGTGATCTGA
TGAGGCAGCTAGCAACGGACATCTGCTGCTCTATCCCATTCAAGTTCGGA
GTTGCTGGCTTTGATAAAAAGGATGTCTTTGATTCCCTGCATACCCACGC
GGGCACTGGGTTCACTTTGCTTCTGCCGCTGGCCATGGCTGCACTTGTTG
GCGGAGTTTCCAGCCCGATGCATAACTGGGCCATGAGATGCTTCCACGTC
ATTGGTCGGGGGATGGGCATTGGTACTGCTTCAACCCTCGTCACAGTCTT
GGGGAATGAACCGGGTGGGCTACATTGGATAGATGCGATGGAGTCTGGCC
ACACCGTTTGTTCACGGGCCGTGTTACAGTAAATGGGCAAGCCAAGCGGA
GGTTGTGGTACGTGTCGTGCGCGAAGAGTCAAGTGCGATGAAACCAGACC
TGTCTGCCGTCGATGTAGGAAAGCAAGGCGGACTTGCTCCGGTTATCGAG
ACCCGCACTCGGTATGGTTTAGGGACGAGAGCGATGCAGTAGCCCGAAGA
GTCAAGGGATCTGCCACTTTAGACACCGGATCTTCATCCGCAGAATCTCC
AATTCTGACGCTAGCCAGAAGAAATACTTCCTCTGAATACTACCCTGGAC
AACACACCCTGCGGTTCCCCCTAGCGATAGTTAACTTTGCGTTGGATCAT
ACTTTCCAAGCCACATGCTTTTTCCTGGACGCTTACACGTGGTTCAATGC
TTCTAAAATAGTAGAAACCTCATTCAAACATGGGGCCGGTCCTGCGGAGT
CCCTTGGCCAGAAAGCTATGATGGCTAGCATTGCATCCGTGGGATTAGCG
AATCTTGCTACTTTGTGCGACCCGAATCTGGTTACGGCAGATACAACGCT
GACCGCGATCGTTTGTTTATCATTATTCGAGATTATTGCTTGCCACAAAA
ATGAGAGCCTGGATTCCTGGATCGAACACTCGCAGGGGGTGGCAACTGTC
CTTGAACTTCGCGGCAGAGATCAGCTTCGGCGCGAAGGCGGGTTCTGGAT
GTTTCAAGCCCTCCGAAATGAGGTGGTCCTTGGTTGCCTACAAAAGAAGA
CGAGGCTCCCTTCTGTTCTGGTCGATATGCCTGATCAAGTAGCTGCCGAC
TTGCCGCCGTATCCTTTCCCACCTGACGGGGATCGACTAGTGAAGATCAT
GGCTAAATTCACCGGGCTTCAGGCCGATGTCAGAGAAGGAATCCTCTTGG
ACAGCAGTGAGATTGTAAAGATGGCCATGGCTATAGACTTGGAGTTAGGG
CATTTCGCTAGTCATGCCTCAGCCGATTTCACCTACAAGGTAGAGACACA
ACCCGGTAGTGTGACATCCTGCGAGCACGACGAGGGCAATTTCTGCCATT
ACCAAGGCACCTATCACATCTATCAATCCATCTGGTCCTGCAATATCTGG
AACAATTATCGCTACACCCGAATTCTCGTTAACAGCATGATCCTTACCCA
TCTGCGATCAATGGCCTCGTGTGGCCATCAAGTTCTGGACTATGGCCTCT
TCAAGGACCATTGCATTCGCATCCGTGATCTGATGAGGCAGCTAGCAACG
GACATCTGCTGCTCTATCCCATTCAAGTTCGGAGTTGCTGGCTTTGATAA
AAAGGATGTCTTTGATTCCCTGCATACCCACGCGGGCACTGGGTTCACTT
TGCTTCTGCCGCTGGCCATGGCTGCACTTGTTGGCGGAGTTTCCAGCCCG
ATGCATAACTGGGCCATGAGATGCTTCCACGTCATTGGTCGGGGGATGGG
CATTGGTACTGCTTCAACCCTCGTCACAGTCTTGGGGAATGAACCGGGTG
GGCTACATTGGATAGATGCGATGGAGTCTGGCCACACCGTTTGTTCACGG
GCCGTGTTACAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008698-T1.utr5p1 | KJC3_008698-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008698-T1.utr3p1 | KJC3_008698-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2761213..2763333 + |
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