|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2790857..2793169+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008708-T1 ID=KJC3_008708-T1|Name=KJC3_008708-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2313bp|location=Sequence derived from alignment at ch6:2790857..2793169+ (Aspergillus niger KJC3)
TCTCAGACTCATGCTCCCCTTTCTCTCAACGTTGCGCCATCCTTTTTCTT
GGACCTTCATCCTCAGATCTGGGGGCCGCAGGATTCATTCTGTCTACTCT
GCCTGCAGGTCGATGGCCCTTCATGATGTCATCTGTGTACAATCTGATTT
CTAGAATCGTTCATCAGGCTTACCACATCTGATCCAAACGCCAACACCAA
CAATACCGCCATGGGCAAGTTTCGCACGCGATGGTACAAGACTGATCGAG
CTCAGGATTTTGAGCATGAGCAGGTAGGGGCGTCTTAGATGCTTGACAAA
TCCTGAATCTGCTAGCTAATACTGTGTTGGTGTCATAGGATCGAGATGTT
CGCGCTCGGCAGGTGTACGACACAATCGACCGCCAGGGATTTCAATACTT
GATCGTCTTTGTTGCAGGCGTTGGCTTCTTTCTCGATGGATACACCCTAT
TTGCAAGCAACATGGCACTTCCAATGATCTCCTACGTCTACTGGAAGAAA
GAGGTGTCTTCGATCAAGATTACTTTATTTAACATTGCAACATTAGGCGG
GACGCTACTGGGACAGGTCTTGTTTGGGTACCTGGCTGACCGGAACGGAC
GTAAGAAGATGTATGGCTTGGAGCTGATACTCATGATCACGTCAACACTG
GGCGTCGTTATGGCCTCCCGCGGGGAGAATGATTCGATGAGCATCTACGC
ATGGCTCATATGGTGGCGTATAGTTGTCGGGATTGGTGTCGGAGCCGACT
ATCCTTTGAGTTCAGTCATCACAAGCGAATTTGCCCCCACCAAGCACCGA
GCACGAATGATGGCTTCGGTGTTCTTCATGCAACCTTTAGGGCAGATCTG
GGCAAACCTTGTGTCGTTGATTGTCATCGCCACCAGCCGTTCAGATACCA
ATGATTTGACCATGTCTGTCGATAGAATGTGGCGCTACGTCATTGGTATC
GGTGTGATTCCGGCAGCAATAGCAACTTGCTTCCGGTTCTTCGTTCCGGA
GTCGCCACGCTTCCTCATGGAGATCGACGATGACCCAGTGAAAGTCGAGT
TCGATGCAACCGCACTCTTTACCGAACCAAATGCTGTTTCCTCCTCCCCG
ACTCTCGAAACCGAAAGCTGGCACAATTTCCCGGGGCAAGCATATTCCCT
GACTACGATCACGGCGGAAGACCGATCCTCCACATCCCAGACCGGCATCC
TTCAACCAGCGACTTTAAACTCTCACTGGCGCTTAACGTGGAAGGACATC
GTACAATACTTCTGGGTGGAAGGTAATTGGCGAACTCTAGCTGGGACAGC
TATGTCCTGGTTCTTCTTAGACTTTGGTTTCTATGGTATCAGTCTCTCCA
GCCCGCAATTTTTGGCCAAAACCTGGGGATCCATTCATTTGAGCGCGCCT
GCGCCTTACTGGGAGACGAACGACAGTCCTGGTGCAAGCGTCTATGACAT
GTTCTTCGCAAGTTGCACTCACGCGCTGGTCATCTTGAATGTGGGTAGCT
TTGCCGGCGGGCTTCTCCTCATCTTAGTGATCCACAAACTGGACAGAGTC
GCTCTACAAAAATACTCTTTTCTCGCACTCTCCGCACTCTTCATCGCCCT
GGGTTGCATGCTTATCACCATACAAAAAGAAGGTCCTGTGGCCGTTGTCT
TGTACGTCATTGGCCAGGCGCTCTTCAACTTTGGTATGTAACCGGCCTCT
ACCATAGGGTTCTCCTGGAAGTCGCTAACCAACCTTTATATAGGACCCAA
CGCTACAACGTACATCATCCCGGCTGAAATATTCCCCACCCGCTACCGTG
CTACCTGTCACGGACTTAGCGCCGGCGCTGGCAAGATCGGCTCTATAGTG
GTTCAGGTCTTTTCCGCCTACTACAACTTCGGTGGTGGTTTCGGAGAGGA
ACCGGTAAAGCGGCACGGCTACATTATGATCGTCTTTGCTGGATGCATGC
TCTTTGGGGCGATAGTAACATGCTGGATACCACCTATCCAAAGAAAGCCT
GATGGATCCGGTAGAGGCAAACTGTGGGGAGGCAAGACGGAGACGCTGGA
GACTTTGGCTCTTGGTCGACTCGGCTTGGACAGTCGATATGCGAATCAGG
GCAGAAGGCGAAGGAGGGACGTTGTTACATGACGATTGAGTCATTTGTTC
ATTTTGAGTATATATTCACGGGTACATACAAGTGTACTTCAATTTCGCTG
TACATATTTGCCAGTGGTCGGGTCGACTGACTGTGACTTCCCACCTATTT
TCTGGCATTACTGCTGTATATAGGATGAAACAATCAGAAGCTACGAGCGT
CGGATGATTATGA back to topCoding sequence (CDS) from alignment at ch6:2790857..2793169+ >KJC3_008708-T1 ID=KJC3_008708-T1|Name=KJC3_008708-T1|organism=Aspergillus niger KJC3|type=CDS|length=5391bp|location=Sequence derived from alignment at ch6:2790857..2793169+ (Aspergillus niger KJC3)
ATGGGCAAGTTTCGCACGCGATGGTACAAGACTGATCGAGCTCAGGATTT
TGAGCATGAGCAGGATCGAGATGTTCGCGCTCGGCAGGTGTACGACACAA
TCGACCGCCAGGGATTTCAATACTTGATCGTCTTTGTTGCAGGCGTTGGC
TTCTTTCTCGATGGATACACCCTATTTGCAAGCAACATGGCACTTCCAAT
GATCTCCTACGTCTACTGGAAGAAAGAGGTGTCTTCGATCAAGATTACTT
TATTTAACATTGCAACATTAGGCGGGACGCTACTGGGACAGGTCTTGTTT
GGGTACCTGGCTGACCGGAACGGACGTAAGAAGATGTATGGCTTGGAGCT
GATACTCATGATCACGTCAACACTGGGCGTCGTTATGGCCTCCCGCGGGG
AGAATGATTCGATGAGCATCTACGCATGGCTCATATGGTGGCGTATAGTT
GTCGGGATTGGTGTCGGAGCCGACTATCCTTTGAGTTCAGTCATCACAAG
CGAATTTGCCCCCACCAAGCACCGAGCACGAATGATGGCTTCGGTGTTCT
TCATGCAACCTTTAGGGCAGATCTGGGCAAACCTTGTGTCGTTGATTGTC
ATCGCCACCAGCCGTTCAGATACCAATGATTTGACCATGTCTGTCGATAG
AATGTGGCGCTACGTCATTGGTATCGGTGTGATTCCGGCAGCAATAGCAA
CTTGCTTCCGGTTCTTCGTTCCGGAGTCGCCACGCTTCCTCATGGAGATC
GACGATGACCCAGTGAAAGTCGAGTTCGATGCAACCGCACTCTTTACCGA
ACCAAATGCTGTTTCCTCCTCCCCGACTCTCGAAACCGAAAGCTGGCACA
ATTTCCCGGGGCAAGCATATTCCCTGACTACGATCACGGCGGAAGACCGA
TCCTCCACATCCCAGACCGGCATCCTTCAACCAGCGACTTTAAACTCTCA
CTGGCGCTTAACGTGGAAGGACATCGTACAATACTTCTGGGTGGAAGGTA
ATTGGCGAACTCTAGCTGGGACAGCTATGTCCTGGTTCTTCTTAGACTTT
GGTTTCTATGGTATCAGTCTCTCCAGCCCGCAATTTTTGGCCAAAACCTG
GGGATCCATTCATTTGAGCGCGCCTGCGCCTTACTGGGAGACGAACGACA
GTCCTGGTGCAAGCGTCTATGACATGTTCTTCGCAAGTTGCACTCACGCG
CTGGTCATCTTGAATGTGGGTAGCTTTGCCGGCGGGCTTCTCCTCATCTT
AGTGATCCACAAACTGGACAGAGTCGCTCTACAAAAATACTCTTTTCTCG
CACTCTCCGCACTCTTCATCGCCCTGGGTTGCATGCTTATCACCATACAA
AAAGAAGGTCCTGTGGCCGTTGTCTTGTACGTCATTGGCCAGGCGCTCTT
CAACTTTGGACCCAACGCTACAACGTACATCATCCCGGCTGAAATATTCC
CCACCCGCTACCGTGCTACCTGTCACGGACTTAGCGCCGGCGCTGGCAAG
ATCGGCTCTATAGTGGTTCAGGTCTTTTCCGCCTACTACAACTTCGGTGG
TGGTTTCGGAGAGGAACCGGTAAAGCGGCACGGCTACATTATGATCGTCT
TTGCTGGATGCATGCTCTTTGGGGCGATAGTAACATGCTGGATACCACCT
ATCCAAAGAAAGCCTGATGGATCCGGTAGAGGCAAACTGTGGGGAGGCAA
GACGGAGACGCTGGAGACTTTGGCTCTTGGTCGACTCGGCTTGGACAGTC
GATATGCGAATCAGGGCAGAAGGCGAAGGAGGGACGTTGTTACATGAATG
GGCAAGTTTCGCACGCGATGGTACAAGACTGATCGAGCTCAGGATTTTGA
GCATGAGCAGGATCGAGATGTTCGCGCTCGGCAGGTGTACGACACAATCG
ACCGCCAGGGATTTCAATACTTGATCGTCTTTGTTGCAGGCGTTGGCTTC
TTTCTCGATGGATACACCCTATTTGCAAGCAACATGGCACTTCCAATGAT
CTCCTACGTCTACTGGAAGAAAGAGGTGTCTTCGATCAAGATTACTTTAT
TTAACATTGCAACATTAGGCGGGACGCTACTGGGACAGGTCTTGTTTGGG
TACCTGGCTGACCGGAACGGACGTAAGAAGATGTATGGCTTGGAGCTGAT
ACTCATGATCACGTCAACACTGGGCGTCGTTATGGCCTCCCGCGGGGAGA
ATGATTCGATGAGCATCTACGCATGGCTCATATGGTGGCGTATAGTTGTC
GGGATTGGTGTCGGAGCCGACTATCCTTTGAGTTCAGTCATCACAAGCGA
ATTTGCCCCCACCAAGCACCGAGCACGAATGATGGCTTCGGTGTTCTTCA
TGCAACCTTTAGGGCAGATCTGGGCAAACCTTGTGTCGTTGATTGTCATC
GCCACCAGCCGTTCAGATACCAATGATTTGACCATGTCTGTCGATAGAAT
GTGGCGCTACGTCATTGGTATCGGTGTGATTCCGGCAGCAATAGCAACTT
GCTTCCGGTTCTTCGTTCCGGAGTCGCCACGCTTCCTCATGGAGATCGAC
GATGACCCAGTGAAAGTCGAGTTCGATGCAACCGCACTCTTTACCGAACC
AAATGCTGTTTCCTCCTCCCCGACTCTCGAAACCGAAAGCTGGCACAATT
TCCCGGGGCAAGCATATTCCCTGACTACGATCACGGCGGAAGACCGATCC
TCCACATCCCAGACCGGCATCCTTCAACCAGCGACTTTAAACTCTCACTG
GCGCTTAACGTGGAAGGACATCGTACAATACTTCTGGGTGGAAGGTAATT
GGCGAACTCTAGCTGGGACAGCTATGTCCTGGTTCTTCTTAGACTTTGGT
TTCTATGGTATCAGTCTCTCCAGCCCGCAATTTTTGGCCAAAACCTGGGG
ATCCATTCATTTGAGCGCGCCTGCGCCTTACTGGGAGACGAACGACAGTC
CTGGTGCAAGCGTCTATGACATGTTCTTCGCAAGTTGCACTCACGCGCTG
GTCATCTTGAATGTGGGTAGCTTTGCCGGCGGGCTTCTCCTCATCTTAGT
GATCCACAAACTGGACAGAGTCGCTCTACAAAAATACTCTTTTCTCGCAC
TCTCCGCACTCTTCATCGCCCTGGGTTGCATGCTTATCACCATACAAAAA
GAAGGTCCTGTGGCCGTTGTCTTGTACGTCATTGGCCAGGCGCTCTTCAA
CTTTGGACCCAACGCTACAACGTACATCATCCCGGCTGAAATATTCCCCA
CCCGCTACCGTGCTACCTGTCACGGACTTAGCGCCGGCGCTGGCAAGATC
GGCTCTATAGTGGTTCAGGTCTTTTCCGCCTACTACAACTTCGGTGGTGG
TTTCGGAGAGGAACCGGTAAAGCGGCACGGCTACATTATGATCGTCTTTG
CTGGATGCATGCTCTTTGGGGCGATAGTAACATGCTGGATACCACCTATC
CAAAGAAAGCCTGATGGATCCGGTAGAGGCAAACTGTGGGGAGGCAAGAC
GGAGACGCTGGAGACTTTGGCTCTTGGTCGACTCGGCTTGGACAGTCGAT
ATGCGAATCAGGGCAGAAGGCGAAGGAGGGACGTTGTTACATGAATGGGC
AAGTTTCGCACGCGATGGTACAAGACTGATCGAGCTCAGGATTTTGAGCA
TGAGCAGGATCGAGATGTTCGCGCTCGGCAGGTGTACGACACAATCGACC
GCCAGGGATTTCAATACTTGATCGTCTTTGTTGCAGGCGTTGGCTTCTTT
CTCGATGGATACACCCTATTTGCAAGCAACATGGCACTTCCAATGATCTC
CTACGTCTACTGGAAGAAAGAGGTGTCTTCGATCAAGATTACTTTATTTA
ACATTGCAACATTAGGCGGGACGCTACTGGGACAGGTCTTGTTTGGGTAC
CTGGCTGACCGGAACGGACGTAAGAAGATGTATGGCTTGGAGCTGATACT
CATGATCACGTCAACACTGGGCGTCGTTATGGCCTCCCGCGGGGAGAATG
ATTCGATGAGCATCTACGCATGGCTCATATGGTGGCGTATAGTTGTCGGG
ATTGGTGTCGGAGCCGACTATCCTTTGAGTTCAGTCATCACAAGCGAATT
TGCCCCCACCAAGCACCGAGCACGAATGATGGCTTCGGTGTTCTTCATGC
AACCTTTAGGGCAGATCTGGGCAAACCTTGTGTCGTTGATTGTCATCGCC
ACCAGCCGTTCAGATACCAATGATTTGACCATGTCTGTCGATAGAATGTG
GCGCTACGTCATTGGTATCGGTGTGATTCCGGCAGCAATAGCAACTTGCT
TCCGGTTCTTCGTTCCGGAGTCGCCACGCTTCCTCATGGAGATCGACGAT
GACCCAGTGAAAGTCGAGTTCGATGCAACCGCACTCTTTACCGAACCAAA
TGCTGTTTCCTCCTCCCCGACTCTCGAAACCGAAAGCTGGCACAATTTCC
CGGGGCAAGCATATTCCCTGACTACGATCACGGCGGAAGACCGATCCTCC
ACATCCCAGACCGGCATCCTTCAACCAGCGACTTTAAACTCTCACTGGCG
CTTAACGTGGAAGGACATCGTACAATACTTCTGGGTGGAAGGTAATTGGC
GAACTCTAGCTGGGACAGCTATGTCCTGGTTCTTCTTAGACTTTGGTTTC
TATGGTATCAGTCTCTCCAGCCCGCAATTTTTGGCCAAAACCTGGGGATC
CATTCATTTGAGCGCGCCTGCGCCTTACTGGGAGACGAACGACAGTCCTG
GTGCAAGCGTCTATGACATGTTCTTCGCAAGTTGCACTCACGCGCTGGTC
ATCTTGAATGTGGGTAGCTTTGCCGGCGGGCTTCTCCTCATCTTAGTGAT
CCACAAACTGGACAGAGTCGCTCTACAAAAATACTCTTTTCTCGCACTCT
CCGCACTCTTCATCGCCCTGGGTTGCATGCTTATCACCATACAAAAAGAA
GGTCCTGTGGCCGTTGTCTTGTACGTCATTGGCCAGGCGCTCTTCAACTT
TGGACCCAACGCTACAACGTACATCATCCCGGCTGAAATATTCCCCACCC
GCTACCGTGCTACCTGTCACGGACTTAGCGCCGGCGCTGGCAAGATCGGC
TCTATAGTGGTTCAGGTCTTTTCCGCCTACTACAACTTCGGTGGTGGTTT
CGGAGAGGAACCGGTAAAGCGGCACGGCTACATTATGATCGTCTTTGCTG
GATGCATGCTCTTTGGGGCGATAGTAACATGCTGGATACCACCTATCCAA
AGAAAGCCTGATGGATCCGGTAGAGGCAAACTGTGGGGAGGCAAGACGGA
GACGCTGGAGACTTTGGCTCTTGGTCGACTCGGCTTGGACAGTCGATATG
CGAATCAGGGCAGAAGGCGAAGGAGGGACGTTGTTACATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008708-T1.utr5p1 | KJC3_008708-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008708-T1.utr3p1 | KJC3_008708-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR005829 |
| DBxref | InterPro:IPR005828 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2790857..2793169 + |
|
