|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2927222..2929356- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008757-T1 ID=KJC3_008757-T1|Name=KJC3_008757-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2135bp|location=Sequence derived from alignment at ch6:2927222..2929356- (Aspergillus niger KJC3)
CAAACTCGCATCTTCACCCATCCACTCAAAGCTCTCGCGTCTTTGAAGGC
CCTGTCCTTCCGATTCTCCCGTGGGATTTTAATCTCCCGATGGGTGGATC
CCTAGACGCCGCCCTGGACAGTGGACGCTGTCGAGATCCATGACGATGGC
ACCTCCGAGCGGGTCGGCGGCATACAAGAAGAAAGATGGCACCCTGACCA
TAGCCCAGGACCGCCAGTCGATCTCTTGGATCCCGGCGGCTGGCGGTGCA
GCTGGTGCAATTACCCTTCCAGTTGCTCAGATTACCAGTACGGCGTAGTC
TTCAGCTTGATTCACCGGGCGCGATTTTACTGACTACGGATAGATTTGCA
ACAGACCCCCGCGAGTAACCCGAAAGTGATGCTGAAGATCTTTGTCCTCC
CTCCGAACGCCCCTGCCAGTTCCCCCGAACAATATGTCTTCTCCTTTACA
GCTGGAGCGAACGCGCGACCGGAAGCTGATGCCATCAGAGATGCGCTCAG
TGCCGCTATTCAAGCTGCAAAGACAGCTCAGAATGCCCCCGTTAAAGAAG
GCGTGTCTCCTGCTATGGCCATAGCGAATGCTGTATCATCGGCAGGGAAA
GAGAAGAACCCATGGGATGATGACAAGCGGCTTCAAGGAGATGTGGAGTT
GCAACAGTCGCTGCTGAAGTCGAATCCGATTCTCCAGCGCATGTTCATGG
AGTCGTTACATACCAAGCCGGATACTTTGTCTGCTTCGCAGTTCATGACG
CAGTTCTGGTCCACTCGACTTCATCTTTTGCGCGCGCATGCGATCGAGCG
GTCGCAGACACGCGGATCCTACAATGTGCTGTCGACATTGAAGCCGCGGG
TGGAGGATAGCGTGACAAAATTGAATATTAGCAAGGAGCAGATCCAGTTG
ATTTTCAATCAGCACCCGCTTGTGAAGCGGGTGTACGATGAGAATGTACC
CAAGCTTAGCGAGCAGCAGTTCTGGTCTCGGTTTTTCCAAAGTCGGTTGT
TCAAGAAACTGCGCGGAGAGCGCATCTCCGAAACGGATCCCACGGACATA
ATCCTGGACAAATACCTTAAGGCGGACGAGTCGGGAAATTTACCGCGCGA
CGCGCATGTTCCGCATTTCCTGGATCTGGCTGGAAATGAAGTGAACAACA
GTCAACGGCAAGGTAACCGACCTGATCTCGACATGCGCCCGTCCTCGGTG
GAGAAGGTGCCTATCATCCGCACCCTGAATAGTCTGAGTGAGAAGATTAT
GGCGAACGTTGCACCAGCCGATGGCGAGGCAGATGGCAAGACGGGTGAGG
ATGGGACGTACAACGAGCTGCAGCTGCGTGACTTACGCGGGGACGAGGAA
CAGCAACGTATCCTCCTCAACGTCAAGGACCAAAGTCGCTTTTTCTCGTC
ACACTCAAAAACTGCGGAGGACGAGCAAAATAAGCTGTTTGCCCAGCAGG
ATCCAAATCAGATACTCGGACAGCTACGGGGGGATCTGGAACAAAATCTG
CCCGAGGGCGGAGCCGCGCCGCTGGGGAGATTGGTAGAACCGCAGGAAGA
GGACGATGAGGATCAGCAAAAGTTCGAAGACGTAATTGGCTCTAGGGCCA
ATTTGAAGCGCGCCTCAAACCAGATCCTCGAAGCGATCCGTGACCGCCGC
TCCCAAACAGAGGGATCAGGCAATGCCGGCACATATGGTTTGTCGACTGC
ATTGTACGACCGGCTGACCTTAACGCATGCCACGACGACTGAATTTCTGC
ATCAATTCTGGCAGGCATTTCTGTCAGGAAACGCGGATCGCGCAGGTGAG
GTAGCTTCGCTTGTGGAGTCACTGAACCGAGCCATGGAGCGCATTAAGTC
GGTGGCGCAAGACGCAGAGACAGAGCGGCAGGTTGAGGTTGATCGACTGA
AGCAGCATGCCCGAGAAGTGCTGGAAAGGACGGGAAGGAAGCTGAAGCTC
AATCTCGCCGGTGTGGCTGGGGGCGAACAAGCTGTCAATCGACTATTGGG
GCCGACCATTCGGGCGTTGGAAACGGCATTGGCGAAGTACAACCAGGCGT
TGGCTGAAGAAATGAAGGAAATGCCATCTGCGTGATATGGCCATAATGTA
TGATAGAATAGACATAAATGACTATTAACGATTCA back to topCoding sequence (CDS) from alignment at ch6:2927222..2929356- >KJC3_008757-T1 ID=KJC3_008757-T1|Name=KJC3_008757-T1|organism=Aspergillus niger KJC3|type=CDS|length=3780bp|location=Sequence derived from alignment at ch6:2927222..2929356- (Aspergillus niger KJC3)
ATTTGCAACAGACCCCCGCGAGTAACCCGAAAGTGATGCTGAAGATCTTT
GTCCTCCCTCCGAACGCCCCTGCCAGTTCCCCCGAACAATATGTCTTCTC
CTTTACAGCTGGAGCGAACGCGCGACCGGAAGCTGATGCCATCAGAGATG
CGCTCAGTGCCGCTATTCAAGCTGCAAAGACAGCTCAGAATGCCCCCGTT
AAAGAAGGCGTGTCTCCTGCTATGGCCATAGCGAATGCTGTATCATCGGC
AGGGAAAGAGAAGAACCCATGGGATGATGACAAGCGGCTTCAAGGAGATG
TGGAGTTGCAACAGTCGCTGCTGAAGTCGAATCCGATTCTCCAGCGCATG
TTCATGGAGTCGTTACATACCAAGCCGGATACTTTGTCTGCTTCGCAGTT
CATGACGCAGTTCTGGTCCACTCGACTTCATCTTTTGCGCGCGCATGCGA
TCGAGCGGTCGCAGACACGCGGATCCTACAATGTGCTGTCGACATTGAAG
CCGCGGGTGGAGGATAGCGTGACAAAATTGAATATTAGCAAGGAGCAGAT
CCAGTTGATTTTCAATCAGCACCCGCTTGTGAAGCGGGTGTACGATGAGA
ATGTACCCAAGCTTAGCGAGCAGCAGTTCTGGTCTCGGTTTTTCCAAAGT
CGGTTGTTCAAGAAACTGCGCGGAGAGCGCATCTCCGAAACGGATCCCAC
GGACATAATCCTGGACAAATACCTTAAGGCGGACGAGTCGGGAAATTTAC
CGCGCGACGCGCATGTTCCGCATTTCCTGGATCTGGCTGGAAATGAAGTG
AACAACAGTCAACGGCAAGGTAACCGACCTGATCTCGACATGCGCCCGTC
CTCGGTGGAGAAGGTGCCTATCATCCGCACCCTGAATAGTCTGAGTGAGA
AGATTATGGCGAACGTTGCACCAGCCGATGGCGAGGCAGATGGCAAGACG
GGTGAGGATGGGACGTACAACGAGCTGCAGCTGCGTGACTTACGCGGGGA
CGAGGAACAGCAACGTATCCTCCTCAACGTCAAGGACCAAAGTCGCTTTT
TCTCGTCACACTCAAAAACTGCGGAGGACGAGCAAAATAAGCTGTTTGCC
CAGCAGGATCCAAATCAGATACTCGGACAGCTACGGGGGGATCTGGAACA
AAATCTGCCCGAGGGCGGAGCCGCGCCGCTGGGGAGATTGGTAGAACCGC
AGGAAGAGGACGATGAGGATCAGCAAAAGTTCGAAGACGTAATTGGCTCT
AGGGCCAATTTGAAGCGCGCCTCAAACCAGATCCTCGAAGCGATCCGTGA
CCGCCGCTCCCAAACAGAGGGATCAGGCAATGCCGGCACATATGGTTTGT
CGACTGCATTGTACGACCGGCTGACCTTAACGCATGCCACGACGACTGAA
TTTCTGCATCAATTCTGGCAGGCATTTCTGTCAGGAAACGCGGATCGCGC
AGGTGAGGTAGCTTCGCTTGTGGAGTCACTGAACCGAGCCATGGAGCGCA
TTAAGTCGGTGGCGCAAGACGCAGAGACAGAGCGGCAGGTTGAGGTTGAT
CGACTGAAGCAGCATGCCCGAGAAGTGCTGGAAAGGACGGGAAGGAAGCT
GAAGCTCAATCTCGCCGGTGTGGCTGGGGGCGAACAAGCTGTCAATCGAC
TATTGGGGCCGACCATTCGGGCGTTGGAAACGGCATTGGCGAAGTACAAC
CAGGCGTTGGCTGAAGAAATGAAGGAAATGCCATCTGCGTGAATGACGAT
GGCACCTCCGAGCGGGTCGGCGGCATACAAGAAGAAAGATGGCACCCTGA
CCATAGCCCAGGACCGCCAGTCGATCTCTTGGATCCCGGCGGCTGGCGGT
GCAGCTGGTGCAATTACCCTTCCAGTTGCTCAGATTACCAATTTGCAACA
GACCCCCGCGAGTAACCCGAAAGTGATGCTGAAGATCTTTGTCCTCCCTC
CGAACGCCCCTGCCAGTTCCCCCGAACAATATGTCTTCTCCTTTACAGCT
GGAGCGAACGCGCGACCGGAAGCTGATGCCATCAGAGATGCGCTCAGTGC
CGCTATTCAAGCTGCAAAGACAGCTCAGAATGCCCCCGTTAAAGAAGGCG
TGTCTCCTGCTATGGCCATAGCGAATGCTGTATCATCGGCAGGGAAAGAG
AAGAACCCATGGGATGATGACAAGCGGCTTCAAGGAGATGTGGAGTTGCA
ACAGTCGCTGCTGAAGTCGAATCCGATTCTCCAGCGCATGTTCATGGAGT
CGTTACATACCAAGCCGGATACTTTGTCTGCTTCGCAGTTCATGACGCAG
TTCTGGTCCACTCGACTTCATCTTTTGCGCGCGCATGCGATCGAGCGGTC
GCAGACACGCGGATCCTACAATGTGCTGTCGACATTGAAGCCGCGGGTGG
AGGATAGCGTGACAAAATTGAATATTAGCAAGGAGCAGATCCAGTTGATT
TTCAATCAGCACCCGCTTGTGAAGCGGGTGTACGATGAGAATGTACCCAA
GCTTAGCGAGCAGCAGTTCTGGTCTCGGTTTTTCCAAAGTCGGTTGTTCA
AGAAACTGCGCGGAGAGCGCATCTCCGAAACGGATCCCACGGACATAATC
CTGGACAAATACCTTAAGGCGGACGAGTCGGGAAATTTACCGCGCGACGC
GCATGTTCCGCATTTCCTGGATCTGGCTGGAAATGAAGTGAACAACAGTC
AACGGCAAGGTAACCGACCTGATCTCGACATGCGCCCGTCCTCGGTGGAG
AAGGTGCCTATCATCCGCACCCTGAATAGTCTGAGTGAGAAGATTATGGC
GAACGTTGCACCAGCCGATGGCGAGGCAGATGGCAAGACGGGTGAGGATG
GGACGTACAACGAGCTGCAGCTGCGTGACTTACGCGGGGACGAGGAACAG
CAACGTATCCTCCTCAACGTCAAGGACCAAAGTCGCTTTTTCTCGTCACA
CTCAAAAACTGCGGAGGACGAGCAAAATAAGCTGTTTGCCCAGCAGGATC
CAAATCAGATACTCGGACAGCTACGGGGGGATCTGGAACAAAATCTGCCC
GAGGGCGGAGCCGCGCCGCTGGGGAGATTGGTAGAACCGCAGGAAGAGGA
CGATGAGGATCAGCAAAAGTTCGAAGACGTAATTGGCTCTAGGGCCAATT
TGAAGCGCGCCTCAAACCAGATCCTCGAAGCGATCCGTGACCGCCGCTCC
CAAACAGAGGGATCAGGCAATGCCGGCACATATGGTTTGTCGACTGCATT
GTACGACCGGCTGACCTTAACGCATGCCACGACGACTGAATTTCTGCATC
AATTCTGGCAGGCATTTCTGTCAGGAAACGCGGATCGCGCAGGTGAGGTA
GCTTCGCTTGTGGAGTCACTGAACCGAGCCATGGAGCGCATTAAGTCGGT
GGCGCAAGACGCAGAGACAGAGCGGCAGGTTGAGGTTGATCGACTGAAGC
AGCATGCCCGAGAAGTGCTGGAAAGGACGGGAAGGAAGCTGAAGCTCAAT
CTCGCCGGTGTGGCTGGGGGCGAACAAGCTGTCAATCGACTATTGGGGCC
GACCATTCGGGCGTTGGAAACGGCATTGGCGAAGTACAACCAGGCGTTGG
CTGAAGAAATGAAGGAAATGCCATCTGCGTGAATGACGATGGCACCTCCG
AGCGGGTCGGCGGCATACAAGAAGAAAGATGGCACCCTGACCATAGCCCA
GGACCGCCAGTCGATCTCTTGGATCCCGGCGGCTGGCGGTGCAGCTGGTG
CAATTACCCTTCCAGTTGCTCAGATTACCA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008757-T1.utr3p1 | KJC3_008757-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008757-T1.utr5p1 | KJC3_008757-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926315C |
| DBxref | InterPro:IPR013876 |
| DBxref | InterPro:IPR011993 |
| DBxref | InterPro:IPR005607 |
| DBxref | PFAM:PF08567 |
| DBxref | PFAM:PF03909 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2927222..2929356 - |
|
