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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3019498..3021733+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008782-T1 ID=KJC3_008782-T1|Name=KJC3_008782-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2236bp|location=Sequence derived from alignment at ch6:3019498..3021733+ (Aspergillus niger KJC3) CTTCTGGGATGGCTTGGTTGATCTGATATCGGGCGGAGGTGCGACTTCTT
CCCCCACCGCATGTGTCGATTTGGTCGCGTTGACTATGGTTGTTGCAATG
GGAAGTTTGGCTAAAGCAAGATTCATCTCGCAGTTGACAAATGAAGAATG
TGCAATATCATGCAGCTCTCCGGCAATGCATTCACTTCAGCTGCCAACAA
TGACACCCCCTGACCAAGGTTGGGGTTCAGCCGAGGTCGGATCGTCGAGA
CCAGAACACGATGAAACCGGCCATCATGAGACAATTCGACCTCCTTCCCA
AAAATGAAGGAGCAGTGCAACCCAACCTCGGACCGCTTCACAAACCGTCT
TATCTATGGACGCCATCGTGTCTCGGCAAGAGGCTAGGATAATACTAAAG
CCACGGCGCGATCCGTTCGTTGGTTGCGGTGAAATTGATTTAATTACCTT
TCCCCTCATTTAATGCTCCGCTCCTCGCCAGCTGGTCACGCAACCCACCG
GCTGCTTGTTGTCTCTCATGGACTCCAGAGCACCCCAGGATTCAGCAGGT
ATGCACCATGGCTCTGCCACTGCAGCGCCAGCAGAGCTGCCTCCGTCGGG
CCCTGTCTACCAGGTCTACAAGCAGCGGTTCTGGGGATTGGCCCAGTTGG
TGCTGTTGAACATTGTTGTTAGTTGGGATGTAGGTTCTCTCTCTGCCGCC
TCTAAGAATGTGCACTCTTCTGATACCCGCCGTCGTCTAGTGGTTAACAT
TTTCCTCGATATCGACTACTGCGGCTGAGCATTTCCGCGTTTCTGAGAGC
GCCATCAATTGGATGAGCACCGGTTACCTCTTCGCTTTTTGTGTCGCCAG
CCCGTGAGTTTAGCCCTGAATATTTCCAATTGTCTGCGGTGCTTGGAAGC
GACTGGAATTCACGCTCATTCTTGCTCTCAGCGTAGTGATCTTCACTCTC
AATAAAGGTGGCCCTAAGCCCGCCATCATCACCACCTCAACCCTCCTCCT
CGTCGGCAACTGGATTCGATATGCAGGAACCAAAGCGAAAGGAGGCATCT
TCGGTGTTGCCATGTTCGGACAGATCCTCATCGGACTGGCGCAGCCATTC
TGTTTGAGCGCTCCGACGCGATACAGCGACCTCTGGTTCTCTGACCAGGG
CCGGACCAGCGCAACGGCCGTAGCCACCCTTGCCAATCCGTTGGGTGCAG
CATTGGGAGAGCTGATCGACTCTTTCTGGGCGACCAAGCCAAGCGAAGTC
CCGAACATGGTTCTGTATATCTCTGTCATCGTAAGCCTTCCTCAGATCCC
TCCACACATAGATAGACTAAAGCCAAGCCGGCCACAACCTGTCCCACTCA
CCAACTAACAACCCAAAAGGCAACGATAGCAGCACTCCCTTCATTTTTCA
TTCCCTCCAAGCCCCCAACGCCTCCAAGCGCTTCATCTGCGAGCACCAAC
GCCTCCGCACCTCTCCTCCCGGCCATAACCCAACTCCTCAGAACCCTCGA
GTTCTACCTGATCTTGATCCCTTTCTCCATATACGTTGGCTTCTTTAACA
GCATCTCCTCGCTGCTCAACCAAATCCTCGAACCCTACTCATACACCGAA
ACCGAAGCCGGCATTGCAGGAGGCCTTCTGATCATTGTTGGGCTCATAGC
CTCAGCCATCATCTCTCCCCTCACAGACCGCTATAAGCACTACCTCGCCA
CCATCCGCACACTTGTCCCTATCGTAGCAATCACCTACATTGCCCTGATA
TTTGCCCCGCCCAGCTCCGCCGGCATCGCACCATCGTATGTCGTGTGCTC
CCTCCTCGGAGCTTCCTCCTTCGCCCTCCTTCCTGTCGTTCTGGAGTACC
TGGTCGAAATCACGTATCCCTTCTCCCCGGAGATTGGAAGCACTATCTGC
TGGACGGGTGGGCAGTTGCTGGGCGCCATATTCATTCTAGTTCAGGATGC
ATTGAAGGCCGGAGAGGACGCTAACCCGCCGGCCAATATGCAGAACGCGT
TGATTTTCTCTGCTGTTGTGGCGGCTGTCGCGGCGCCGTGGCCGTTGTGT
ATTGGCTGTTTTGGACGCGATGTAAGGAGACGGAGATTGGATGTTGATCG
AGGCGTGGAGCTGGGCCAGGAGGAGGCGGGTGAGGAACAGGGCGATGAGG
AACGTAGAGCTGGAGCTGGAGAGGATGACAAGAAAGGATTCTTTGGGTTG
AGCGTGGCGTGGAGGAAGAGATCTGGAGATATGTGA back to topCoding sequence (CDS) from alignment at ch6:3019498..3021733+ >KJC3_008782-T1 ID=KJC3_008782-T1|Name=KJC3_008782-T1|organism=Aspergillus niger KJC3|type=CDS|length=2172bp|location=Sequence derived from alignment at ch6:3019498..3021733+ (Aspergillus niger KJC3) ATGTTCGGACAGATCCTCATCGGACTGGCGCAGCCATTCTGTTTGAGCGC TCCGACGCGATACAGCGACCTCTGGTTCTCTGACCAGGGCCGGACCAGCG CAACGGCCGTAGCCACCCTTGCCAATCCGTTGGGTGCAGCATTGGGAGAG CTGATCGACTCTTTCTGGGCGACCAAGCCAAGCGAAGTCCCGAACATGGT TCTGTATATCTCTGTCATCGCAACGATAGCAGCACTCCCTTCATTTTTCA TTCCCTCCAAGCCCCCAACGCCTCCAAGCGCTTCATCTGCGAGCACCAAC GCCTCCGCACCTCTCCTCCCGGCCATAACCCAACTCCTCAGAACCCTCGA GTTCTACCTGATCTTGATCCCTTTCTCCATATACGTTGGCTTCTTTAACA GCATCTCCTCGCTGCTCAACCAAATCCTCGAACCCTACTCATACACCGAA ACCGAAGCCGGCATTGCAGGAGGCCTTCTGATCATTGTTGGGCTCATAGC CTCAGCCATCATCTCTCCCCTCACAGACCGCTATAAGCACTACCTCGCCA CCATCCGCACACTTGTCCCTATCGTAGCAATCACCTACATTGCCCTGATA TTTGCCCCGCCCAGCTCCGCCGGCATCGCACCATCGTATGTCGTGTGCTC CCTCCTCGGAGCTTCCTCCTTCGCCCTCCTTCCTGTCGTTCTGGAGTACC TGGTCGAAATCACGTATCCCTTCTCCCCGGAGATTGGAAGCACTATCTGC TGGACGGGTGGGCAGTTGCTGGGCGCCATATTCATTCTAGTTCAGGATGC ATTGAAGGCCGGAGAGGACGCTAACCCGCCGGCCAATATGCAGAACGCGT TGATTTTCTCTGCTGTTGTGGCGGCTGTCGCGGCGCCGTGGCCGTTGTGT ATTGGCTGTTTTGGACGCGATGTAAGGAGACGGAGATTGGATGTTGATCG AGGCGTGGAGCTGGGCCAGGAGGAGGCGGGTGAGGAACAGGGCGATGAGG AACGTAGAGCTGGAGCTGGAGAGGATGACAAGAAAGGATTCTTTGGGTTG AGCGTGGCGTGGAGGAAGAGATCTGGAGATATGTGAATGTTCGGACAGAT CCTCATCGGACTGGCGCAGCCATTCTGTTTGAGCGCTCCGACGCGATACA GCGACCTCTGGTTCTCTGACCAGGGCCGGACCAGCGCAACGGCCGTAGCC ACCCTTGCCAATCCGTTGGGTGCAGCATTGGGAGAGCTGATCGACTCTTT CTGGGCGACCAAGCCAAGCGAAGTCCCGAACATGGTTCTGTATATCTCTG TCATCGCAACGATAGCAGCACTCCCTTCATTTTTCATTCCCTCCAAGCCC CCAACGCCTCCAAGCGCTTCATCTGCGAGCACCAACGCCTCCGCACCTCT CCTCCCGGCCATAACCCAACTCCTCAGAACCCTCGAGTTCTACCTGATCT TGATCCCTTTCTCCATATACGTTGGCTTCTTTAACAGCATCTCCTCGCTG CTCAACCAAATCCTCGAACCCTACTCATACACCGAAACCGAAGCCGGCAT TGCAGGAGGCCTTCTGATCATTGTTGGGCTCATAGCCTCAGCCATCATCT CTCCCCTCACAGACCGCTATAAGCACTACCTCGCCACCATCCGCACACTT GTCCCTATCGTAGCAATCACCTACATTGCCCTGATATTTGCCCCGCCCAG CTCCGCCGGCATCGCACCATCGTATGTCGTGTGCTCCCTCCTCGGAGCTT CCTCCTTCGCCCTCCTTCCTGTCGTTCTGGAGTACCTGGTCGAAATCACG TATCCCTTCTCCCCGGAGATTGGAAGCACTATCTGCTGGACGGGTGGGCA GTTGCTGGGCGCCATATTCATTCTAGTTCAGGATGCATTGAAGGCCGGAG AGGACGCTAACCCGCCGGCCAATATGCAGAACGCGTTGATTTTCTCTGCT GTTGTGGCGGCTGTCGCGGCGCCGTGGCCGTTGTGTATTGGCTGTTTTGG ACGCGATGTAAGGAGACGGAGATTGGATGTTGATCGAGGCGTGGAGCTGG GCCAGGAGGAGGCGGGTGAGGAACAGGGCGATGAGGAACGTAGAGCTGGA GCTGGAGAGGATGACAAGAAAGGATTCTTTGGGTTGAGCGTGGCGTGGAG GAAGAGATCTGGAGATATGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0022857 | transmembrane transporter activity |
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
Property Name | Value |
DBxref | InterPro:IPR036259 |
DBxref | InterPro:IPR011701 |
DBxref | PFAM:PF07690 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:3019498..3021733 + |
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