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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3257495..3259601+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008856-T1 ID=KJC3_008856-T1|Name=KJC3_008856-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2107bp|location=Sequence derived from alignment at ch6:3257495..3259601+ (Aspergillus niger KJC3)
GTCTTTACCAAGCCCGTCATCACCAGACTTCGAGAAATATTCTCCGTTTG
TTTGGAAGGATAATGCTTGGAGACGGGCAGAGAAATACCAGTGTAAGTGA
CTCCTTTGGGGTTATAGAATATGACTGTGGGCAACAGCGATTGTGGTACT
TTGTTATGAAAGAGGTGGAGAGATCCTTTGTTTTTCAACCCAGAAGATCT
ATGATACCATATCTTTGCCACATATTCCATCATCTAATCAGTAAGGCTAC
CGACTAGCGGCACTAACCCTTCATGCCTCTACCGTGAACTTGGCTTACAG
CATATGTCAACTAACTGTTGGATTTGACTTATAGGGATGGTTGTACCAAA
GGAGGGTGAGAGGGTGGTCCCGAACCGCCCTTTTCGCATCCTGGATGCTC
CCCTCCTCCGAGACGATTTCTATTGTTCGACATTAGCATACTCATCCACG
TCCGGCATACTTGCTGTCGGCCTTGGCCATCGAGTCTATCTATGGTCTGA
GCATCTGGGTGTGCAGCATCCGCCACTCAGTGACCAACACCCCTCAAACT
ACGTGACATCACTTGCGTTCTCCTCGGAGAACGGTGGAAAAAGCATTCTG
GCCGTTGGGAGACAGTCGGGTATGTTATCTCTTTGGAGTACATTCGATTC
TGATGTCCGTTTCGAGATAAGCCATCCAGATTCTATAACTTGTCTGGCAT
TCCGGCCAACAAAATCCCGGAGGTTATCAGAGAGACTTCGCCACCTTGAG
GTCGATGTTGAGGACCTCGCTGTAGGTGACGATCTTGGGAATATCTGGTA
CTACTCTGTGGAATGGCCTGATAATGAAGAATGGGATGAATACGACTTCA
ATGGATCCATGACTTTACTCGCCAAGATTACGGCCCATACGCAGCAAATC
TGCGGCATTACTTGGTCCCCTGAAGGGTCCTATCTTGCAACGGGAGGGAA
TGACAACTGCTGCTTGCTCTTCGACCTCCATGATATTCTTCCTCCACGGG
AGCACAAGCCTTCGTCCCAGGATCACACACCACATCAGTCGCGTCAATCG
GAAGGCACAGAGTGTACAGGCACGTTTACTTGCTTTGCTGCGAGTGCTAG
CAAACGGCTTTTTCGAAGGCGCAGTCTTATTAGTCACCTACTTCCGCCCT
GGGCTTTTTCCAGCGCGAAGCCACTGTATTCTTCTCTCCTCAATCATACT
GGGTCATTGATCTCCGGTGGTGATCGAACCGTCCTGGTCCCGTCCAACCG
TCAAAGACATCGGCTGGTCCATGGCGCCGCGGTCAAGGCTATTGCATTTG
CCCCTTGGCAGCCGTCTCTTTTGGCTACCGGAGGCGGGTCAAACGACCGA
GCCATTCATTTCTACCACGCCCCGACGGGCGCCTGTCTGGCCACGATCAA
TGTGTATGCCCAGGTGACCAGCTTGATTTGGAGTCGTACCCGACGGGAAA
TTGTTGCCACATTCGGATTCGCACAGCCTGAGCATCCGTTCCGCATCGCA
GTATTCGCCTGGCCGAGCTGTGAGCAGATCGCCGCGATTCCTTGGGGGCC
GCATGGGAGTAGTTGGGACAGCCCTGAAAGCGACATGATTGACTGTGGGC
GTGCACTCTGCGCTGTGAGTTATCCCGGCCGTCCTCGCGACTGCGAAGAC
CACAGACCGGATCAAGAAAGCCGTTCTCCCACATCGATGGTGATGCACGA
CCGACTAGCTGAGCAGAGTCGGAGCGAGCCCGGCCGACGGAGCACCGTTC
GGGAAGTTGTACGACCTCGCGCCAGAGAGGGGGGTCTCTGGTGTTCGCGC
ACGGTGCAGGAAGGCTGCATCATTGTGGCTTCCAGCGACCAGAGTGTCAA
ATTCCATGAAGTATGGAGCGGACCTAAACGAGGCGCGGCAGTTGTGGCCG
GACCTCTGGGAGGCAGTGGCATTCTCGAAGGGCTCGAAGGGCTGGAGATC
ATTGGGGACGAAATCATCCGTTAATATGCATTGCAGCGCGCACATATCAT
TATCGATATTAATTAGGTTGAGACTTCGAAGGACTCGACTATTACTATTA
CACGAAAGCCAGGTGTACCTAGATACTTAGTTGCATTGTTAGATTTCAAC
AATAGAC back to topCoding sequence (CDS) from alignment at ch6:3257495..3259601+ >KJC3_008856-T1 ID=KJC3_008856-T1|Name=KJC3_008856-T1|organism=Aspergillus niger KJC3|type=CDS|length=1638bp|location=Sequence derived from alignment at ch6:3257495..3259601+ (Aspergillus niger KJC3)
ATGGTTGTACCAAAGGAGGGTGAGAGGGTGGTCCCGAACCGCCCTTTTCG
CATCCTGGATGCTCCCCTCCTCCGAGACGATTTCTATTGTTCGACATTAG
CATACTCATCCACGTCCGGCATACTTGCTGTCGGCCTTGGCCATCGAGTC
TATCTATGGTCTGAGCATCTGGGTGTGCAGCATCCGCCACTCAGTGACCA
ACACCCCTCAAACTACGTGACATCACTTGCGTTCTCCTCGGAGAACGGTG
GAAAAAGCATTCTGGCCGTTGGGAGACAGTCGGGTATGTTATCTCTTTGG
AGTACATTCGATTCTGATGTCCGTTTCGAGATAAGCCATCCAGATTCTAT
AACTTGTCTGGCATTCCGGCCAACAAAATCCCGGAGGTTATCAGAGAGAC
TTCGCCACCTTGAGGTCGATGTTGAGGACCTCGCTGTAGGTGACGATCTT
GGGAATATCTGGTACTACTCTGTGGAATGGCCTGATAATGAAGAATGGGA
TGAATACGACTTCAATGGATCCATGACTTTACTCGCCAAGATTACGGCCC
ATACGCAGCAAATCTGCGGCATTACTTGGTCCCCTGAAGGGTCCTATCTT
GCAACGGGAGGGAATGACAACTGCTGCTTGCTCTTCGACCTCCATGATAT
TCTTCCTCCACGGGAGCACAAGCCTTCGTCCCAGGATCACACACCACATC
AGTCGCGTCAATCGGAAGGCACAGAGTGTACAGGCACGTTTACTTGCTTT
GCTGCGAGTGCTAGCAAACGGCTTTTTCGAAGGCGCAGTCTTATTAGTCA
CCTACTTCCGCCCTGGGCTTTTTCCAGCGCGAAGCCACTGTATTCTTCTC
TCCTCAATCATACTGGGTCATTGATCTCCGGTGGTGATCGAACCGTCCTG
GTCCCGTCCAACCGTCAAAGACATCGGCTGGTCCATGGCGCCGCGGTCAA
GGCTATTGCATTTGCCCCTTGGCAGCCGTCTCTTTTGGCTACCGGAGGCG
GGTCAAACGACCGAGCCATTCATTTCTACCACGCCCCGACGGGCGCCTGT
CTGGCCACGATCAATGTGTATGCCCAGGTGACCAGCTTGATTTGGAGTCG
TACCCGACGGGAAATTGTTGCCACATTCGGATTCGCACAGCCTGAGCATC
CGTTCCGCATCGCAGTATTCGCCTGGCCGAGCTGTGAGCAGATCGCCGCG
ATTCCTTGGGGGCCGCATGGGAGTAGTTGGGACAGCCCTGAAAGCGACAT
GATTGACTGTGGGCGTGCACTCTGCGCTGTGAGTTATCCCGGCCGTCCTC
GCGACTGCGAAGACCACAGACCGGATCAAGAAAGCCGTTCTCCCACATCG
ATGGTGATGCACGACCGACTAGCTGAGCAGAGTCGGAGCGAGCCCGGCCG
ACGGAGCACCGTTCGGGAAGTTGTACGACCTCGCGCCAGAGAGGGGGGTC
TCTGGTGTTCGCGCACGGTGCAGGAAGGCTGCATCATTGTGGCTTCCAGC
GACCAGAGTGTCAAATTCCATGAAGTATGGAGCGGACCTAAACGAGGCGC
GGCAGTTGTGGCCGGACCTCTGGGAGGCAGTGGCATTCTCGAAGGGCTCG
AAGGGCTGGAGATCATTGGGGACGAAATCATCCGTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008856-T1.utr5p1 | KJC3_008856-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008856-T1.utr3p1 | KJC3_008856-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR001680 |
| DBxref | PFAM:PF00400 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3257495..3259601 + |
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