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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3293827..3295866+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008869-T1 ID=KJC3_008869-T1|Name=KJC3_008869-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2040bp|location=Sequence derived from alignment at ch6:3293827..3295866+ (Aspergillus niger KJC3)
GTGAGAAATTAAGGGCGGGTGGGAGGCCCCGGCCCTAAAGGATTGCAAAG
GATTGGGGGTTGCTGGCTGGTGGGAGACTCCGGGTTGCTGCTGGGGATTT
CTATTTCTTTTATATACCCTGCTGGCTTGTTTTTTGCTTGAAAACGATTT
GGAAGGGTGATGAGCACAGTGGAATCTTTGACAAGTGTTTTTTGTTGACC
CTTCTACCTTCTATTGTCCCTCCCAATGGCTGCCGACGCCATGATGAACC
ACCCTTCCTTGGAAAAGGAAGAGGGCCAACTCTCTGAGAAGTCCGCTGCT
TCCAACCTGGACTCGGAGGACCAGCAGGTCGATGCTTCCAAGGAAGATGA
AGCTCCTCCGCGCGACATTACCGGCTGGAAATGGGCCATTGTCGTGGCGG
CCATCTACAGTTCGCAGTTCCTCTTCGCCCTCGACAACACCATCGTCGCC
AACATCCAACCAACCATCGTCGAGGACTTCAACTCCATTTCCAAGCTGTC
CTGGATTAGTGTAGCCTTCCTCATCGGTGCTGCTTCGACTAACCTCGTCT
GGGGTAAGATCTTTGCCCAGTTCAACGCCAAATGGACCTACATCATCTGC
ATTGCCATCTTCGAAATCGGGTCCGCCGTCTGTGGCTCCGCACCCACCAT
GAATGCCTTCATCGTCGGTCGTGCTATCTGTGGCTTCTCCGGCGCTGGCA
TGTACGTCGGTTTGATGACCATGCTGGCCGTGACCACCTCCATGAAAGAG
CGGCCCACGTATGTCGGTGGCGCCGGTTTCACCTGGGGTGTGGGCACCGT
GCTGGGTCCCATCATTGGAGGCGCCTTCACGGACTCATCTGCTGGCTGGC
GCTGGTCCTTCTACATCAACCTGTGCATCGGTGCAGTCTGCGCCCCCGTC
TACATCTTCATGCTCCCCAACAAAGACCCCCGGCCGGGCGTCAGCCTGGG
AGCCCGCGCTCGCGAGATCGACTACCTGGGTGGTGTCCTGACCATTGGCG
CCTTCATCTCCGGTGTCATGGCCATTTCCTTCGGTGGTGCGACTTATCCC
TGGAACTCGGCTAAGATTATCGGTCTATTCTGCTGCTCAGGCGTGCTGTT
CATCCTGCTCGGTATCCAGCAGGGCATTCCTGTCTTCACCACCAAGGAAC
GACGTCTGTTCCCCGTTGAATTCCTCCGCAGTCGCACCATCCTTATCCTC
TTTGCCATGACTGCTGCCGGTGGTACCCTCATCTTCCTTCCCGTCTACAT
GTGCCCGCTTTTCTTCCAGTTCACGCGCGGTGACTCTGCCCTCGAGTCTG
GTGTCCGGCTGCTCCCCTTCATCATCCTGATGATCGTGGCGGTCATTGGA
AACGGCGCTATTCTCTCTGCGCACGGCCTGTACATGCCGTGGTTCTTGGC
CGGTGGCATTCTCTGCCTGATTGGTAGCGCATTGATGTACACCGTGGGTC
TTACGACCTCGGTCGCCCACATCTACGGCTACACGGTGCTGATTGGGTTC
GGAGTGGGCTTGTTCTCTCAGGCTTCTTTCTCCATTGCCCAGGCCGTGGC
TGAGCCGCATATGGCCCCGTCGGCGGTGGGTTTCATTACCTGTGCGCAGA
TCTCCGGGTGCACGATCGCTCTGGCTATTGCCAATGCGGTATTCCTGAAC
AAGAGTGTGGAGGGCATCAAGGCGGTTCTACCGAATGTGTCTTCGTCGGA
GGTGGAGTTAGCCATTACGGGTACTGGGTCTCAATTGTTTGATGGACTTA
GTCAGGAAACGAAGGACCGGGTGTTGGAGGCCATTGTCAAGGCGCTAAAC
AACTCGTATATTCTGTCGATGGTGGCGGCAGCGCTGGTAGTGGTGTTGAG
TGTGTGCATGAAGCGTGAGAAGCTGTTCATTGCTGGTGGTGCTGGCGGTG
TCTAGATTAAGTTGGAGAGGTAAAAATGGGGATATGGGGAAGCAGTGCTG
GAGAAGACTGCTCTGATGGATGCAGATAGATGCATTACTCTACTTAGATT
TTGGGACCATCTCCCTCTCTGGGTTATAGATAGTACATGA back to topCoding sequence (CDS) from alignment at ch6:3293827..3295866+ >KJC3_008869-T1 ID=KJC3_008869-T1|Name=KJC3_008869-T1|organism=Aspergillus niger KJC3|type=CDS|length=1680bp|location=Sequence derived from alignment at ch6:3293827..3295866+ (Aspergillus niger KJC3)
ATGGCTGCCGACGCCATGATGAACCACCCTTCCTTGGAAAAGGAAGAGGG
CCAACTCTCTGAGAAGTCCGCTGCTTCCAACCTGGACTCGGAGGACCAGC
AGGTCGATGCTTCCAAGGAAGATGAAGCTCCTCCGCGCGACATTACCGGC
TGGAAATGGGCCATTGTCGTGGCGGCCATCTACAGTTCGCAGTTCCTCTT
CGCCCTCGACAACACCATCGTCGCCAACATCCAACCAACCATCGTCGAGG
ACTTCAACTCCATTTCCAAGCTGTCCTGGATTAGTGTAGCCTTCCTCATC
GGTGCTGCTTCGACTAACCTCGTCTGGGGTAAGATCTTTGCCCAGTTCAA
CGCCAAATGGACCTACATCATCTGCATTGCCATCTTCGAAATCGGGTCCG
CCGTCTGTGGCTCCGCACCCACCATGAATGCCTTCATCGTCGGTCGTGCT
ATCTGTGGCTTCTCCGGCGCTGGCATGTACGTCGGTTTGATGACCATGCT
GGCCGTGACCACCTCCATGAAAGAGCGGCCCACGTATGTCGGTGGCGCCG
GTTTCACCTGGGGTGTGGGCACCGTGCTGGGTCCCATCATTGGAGGCGCC
TTCACGGACTCATCTGCTGGCTGGCGCTGGTCCTTCTACATCAACCTGTG
CATCGGTGCAGTCTGCGCCCCCGTCTACATCTTCATGCTCCCCAACAAAG
ACCCCCGGCCGGGCGTCAGCCTGGGAGCCCGCGCTCGCGAGATCGACTAC
CTGGGTGGTGTCCTGACCATTGGCGCCTTCATCTCCGGTGTCATGGCCAT
TTCCTTCGGTGGTGCGACTTATCCCTGGAACTCGGCTAAGATTATCGGTC
TATTCTGCTGCTCAGGCGTGCTGTTCATCCTGCTCGGTATCCAGCAGGGC
ATTCCTGTCTTCACCACCAAGGAACGACGTCTGTTCCCCGTTGAATTCCT
CCGCAGTCGCACCATCCTTATCCTCTTTGCCATGACTGCTGCCGGTGGTA
CCCTCATCTTCCTTCCCGTCTACATGTGCCCGCTTTTCTTCCAGTTCACG
CGCGGTGACTCTGCCCTCGAGTCTGGTGTCCGGCTGCTCCCCTTCATCAT
CCTGATGATCGTGGCGGTCATTGGAAACGGCGCTATTCTCTCTGCGCACG
GCCTGTACATGCCGTGGTTCTTGGCCGGTGGCATTCTCTGCCTGATTGGT
AGCGCATTGATGTACACCGTGGGTCTTACGACCTCGGTCGCCCACATCTA
CGGCTACACGGTGCTGATTGGGTTCGGAGTGGGCTTGTTCTCTCAGGCTT
CTTTCTCCATTGCCCAGGCCGTGGCTGAGCCGCATATGGCCCCGTCGGCG
GTGGGTTTCATTACCTGTGCGCAGATCTCCGGGTGCACGATCGCTCTGGC
TATTGCCAATGCGGTATTCCTGAACAAGAGTGTGGAGGGCATCAAGGCGG
TTCTACCGAATGTGTCTTCGTCGGAGGTGGAGTTAGCCATTACGGGTACT
GGGTCTCAATTGTTTGATGGACTTAGTCAGGAAACGAAGGACCGGGTGTT
GGAGGCCATTGTCAAGGCGCTAAACAACTCGTATATTCTGTCGATGGTGG
CGGCAGCGCTGGTAGTGGTGTTGAGTGTGTGCATGAAGCGTGAGAAGCTG
TTCATTGCTGGTGGTGCTGGCGGTGTCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008869-T1.utr5p1 | KJC3_008869-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008869-T1.utr3p1 | KJC3_008869-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_6.18 |
| Note | SMCOG1005: EmrB/QacA |
| Note | SMCOG1005:Drug resistance transporter |
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3293827..3295866 + |
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