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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3382159..3386452- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008897-T1 ID=KJC3_008897-T1|Name=KJC3_008897-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4294bp|location=Sequence derived from alignment at ch6:3382159..3386452- (Aspergillus niger KJC3)
CTCTTCTTCTTCCCTTCTTCTTCTTCCTCCCTTTCCCTTCTCTCCCACCG
ACCATCTTCGCATCTTTCTTTCCTTTCCCATTCACTCTTTTTTGTGTTTT
TCTCCCCTTCCATTCTTTCTTTCAACTACATTCGCTCGCTTCAGTCGATC
GTTTCACTCTTTCACGATCCGATTTCCCAATCTAGCTGTATCTTCGCTTA
CCTCAGGGCCGCCCATTGACGCAGACCTTCGCCATTACCAAACACCGGCC
CCCCCGAATCTGTACCGATCTACTTTGATATCTCAATCTCACGTACAGCC
TCCCCCATTACGGTTGCGAAGAGCAAGGATCATATTTCCCTTCCAAGCTG
CCTAGGTCAGCTGTTTATATTATTCCCACGACATTTGATTACCCTCTCAT
CCCGACGCTTCTGCGACGCGCTCATCTTCTCTCTTTGCGCTTTGCTTCCC
TGGAACTCTCGACTTCCGACGTGCTTCCAGCCAAGCGCTTCCATTCGTTT
GATATTATCCGTCCTCTCTGGCGCTTGACGCTGCTTCAGAGATCCGGACA
CTCTCATCTCCCATCTTTGACTGTCGGCCGGATCGTCACACCCATCATAC
TCCTTTTCCTACCGCGGGATTTCACATTCCCACGAACTTGGTCGTATCGC
ATTTCCTACATTTCAACTTCACTCAATCCCTGCAAACATGTCTTCGACAG
ACACTCCTGACCCCTCGACCACGTCGAACGCTTCCTCCAACACTGCTTCC
ACCATGACCTCGTCTTCGTCGACTACCTCAAGCCCGTCTCCGGCCATGTC
CAACTCTACTACGGCCGCCTCAGCTTCGGCACGTCGACCTCAGCGGAAGA
GCACGCTGACCCAGCAGCAGAAGAACAACAAGCGGCAACGGGCGACCCAG
GATCAACTGGTCACCCTCGAACTGGAATTCAACAAGAACCCGACTCCCAC
GGCAGCCACCCGCGAAAGAATTGCCCAAGAAATCAACATGACTGAGCGGT
CCGTTCAGATCTGGTTCCAAAATAGGTTTGTGGTCCGTACTATCATTCTT
GACCTGCGGCTAATCGTATCTATAGACGCGCAAAGATAAAGATGCTTGCT
AAGAAGAGCATCGAAACGGGCGAGGGCTGTGATTCCATCCCCGAGTCGAT
GCGCCAGTACCTGGCCATGCAATTTGACCCCACCAAGCCTGGTGCAAGGG
ACCCATTTGGGCGCACGGGAGGATACGGAACCGGTAGTGTTTATCCCCAT
GAGTCGGCTCCTTCTGGCAAAGTTGGTATGTTTGAGTCCGCCACTGCTAC
TGTGTAATGAATACTGACAATCACAGTTATCCATCACTTCACCTGTCGCT
CCTTGACTATCGGTAGCTGGCGACGTATCGGACAAAACGCCATGGATCTG
GTGGTATTCTATTCCCCTGAGAAGGCCTGCATGACGTACTACATCAACAA
CGATTCTGCTGGATACAAGATCGAGTATCCGTTTGCCTACATCAAGAACA
TCACACTGGAGTCGGGCGACCAGACTCCTCAGGCAAACGGTGCTCCCCCG
CGACCTGGCGGTCTTGTTGTCGAGCTGAACCGGCCCCCGCTGTTCTACAT
GGACTCCTCCAACTCGGGCGGATTCTACCAGTGTGGTGACTTCACCGAGG
ATCAGCAGGCAAGCCAAATCCTGGTCCACCATCTTGGGGGACATCCCAAG
GTTCTCAGCGTGCAACTTGCCAAGCTAGTGTCTCTGGAGTCCTTCCAGAA
CCGCCTAGCGTACAACAACTTTGCCATGAACCCGCCCATGTCCCCTCCGT
TTATTCAGCGTCCTGCATCTCAGCCGAATCAATTCGCTCCGGCTTTCTTG
AACGTGTTCCCCGAGAGCCATGCTCACCTCAACATTCCGGCGATGCGCGG
ACACAAGCGTCAGAGGAGTCGCTCAGTTCCGGTAGCTGTCGACTTCTCTG
CCATGCAGGCTCCTCTCGCCCACTACAACATGCCCCAGACTCCGGCTCAG
TTCAACCATGCCGATACGGGTATCTTTGCTCCCGTTCCCCAGTCGACTCA
CCCCTTGGCTGTCAACCTTCGGATAGATACCTCTGCCGCCTATGGGTTCG
ACCCGCGGACTCACCCCATGTCGGCTACCACGACAGCTTCCCCATCTGAC
TTTGCCAGCCCCGGACTTTTCAGCACTGGAGCCGGTGGTGACTCAACTCC
TGTTGCTACCAACATGGGTACCCCCTTCAACCTTCCCTTCGTCTCGCCCG
CTGTTGACTCAACTGTGGCGCCCCAAGCATCTTATTCTAACGTCAGTCAT
GCCGATCCTATGATTGCGAACCATTCTCCTCCATTGTCGAACATCTCGCA
CGCTCCCCAAGATATGTACGGCCTGGGTAACGAGCATCAGCCCAACTACA
CGGACGATAGCATGTCCATGAATGGGATCTATCCCAAGCATAACATGAAC
TTCGCTGTTCCGGCTTCTATGGGTCTTGAAACTAACACATATGATCTCCC
CATGCAGCCCATGTCCGGCCATACATCCCCGGGGGTCCATGGCGATTTCC
AGAGCCTGAGCCTGGAGAACGTTGATCCCAGCGGTATGGCCCCTGGCTCC
TGAGGCAGCCGGAACATGCTATGAGCCGCATCGACGTGGGCCGTCTTCGG
CCATCGGCTTAGCCGTATTTCTATCTACCCTTGGGTAGCGCCGCACATTG
GCGCGGATCTTCAAATCTCCGCTACTTCAGTGTTTCGAATTCTTTTCCTG
GCTACTGGTCTCGAGTACCTCCACTCGGACTGATGAGATACCCAGACATC
GCTTGATGTATGGCCAATCGACGATGACGGGAGGATGTATCCTTTCTTGA
TTATGTTCTCAGCGTCTTCTGTATTAATAACCTTCTACGGGGCTGGTCCT
GAGCGTTTATTCGCATTTTTTCATATCTCAGCAGGCTAGCTGGGCTTTTC
ATCTTCTTCTCTGCCCTTGACCATTTTTGTTTTCATTTTGTTTATACCTG
GTCAGGGTTTAACGTGGTTATGCCAGAAAGTCAGACAGATGGCGACATTC
GGTTATTTTCTTGGATTCTTCTGGGTTGGCGGGTTAGGAATTGTTTGCTC
ATTTCCCTTTGTGATGGTTATTTATCGTCCTGAGATCGGCGTCTGCATAT
TCTGCCAGATCTGGCAATCCTGTCATGTAGCACATTGATAATGGTGCCAC
TATCGAGGCGGAGCTGAGACAATCTCCGTCCAGATTGTGCGCACGGCTGA
TATGGAGACATTTCTCAGGTCCAACCTGAACCATGAAACACTACGGATCT
GCCCCACGCGCTGCTCGTAGCGATAATATTATGGAACCAGTCGAGTATCA
AATCTATCGCGACTCGCAACACATAACAGTAGTATACAGGGGTATCGTAT
CTAAATCAATATCAAAATCCAACTAAAAACTACCGACCCTCCCACTCCTT
CGGCACCGGCGCCTTCAACCCCCTCGACTCCCTCAAATACTTCTCAACCC
AAACCTCCATCTTCTCCAACAAGTTCATCTCCCTGCCCCCCTCAGTCACA
CCATCCCGACACCAAACACTCCACGACCCCATCTGCACCGCCATCAACAC
ATCCGTCCCCAACCGATCCCCCACCACCGCAATCTCATCCGCACGACTCA
CCACCCCCCTCTCGCGGAACCACTCCAGCACCTCCTTCCCACAAAACGGC
TTCTTCTCACTCCCCTCTGGCAGCCGAAACACTGGGATTTGCAACTCGCC
GAGCTCCTTCTCCAGCTCGCGCACCTCCGCGTCATACCGCGGGTGACTCC
CCGCGCGGTTCGAGACGATCAGGATCGAGTTATCTTTTGTGAAGGGTGAC
GTTGGGGATGTGCGCAATGCGTGCAGCTTCGATAGGATCTCGGATGGGAA
GGAGGTCGTTTTTGGGTGGCAGAGCGTGTTGTCTTTGTCGAGGACAAGGG
CGCGGATGGTCGGGGGCTTTGAGGCGCTGGGGAGGATTTCTGGGCCGAGA
TTTTCGGGTAGGTGGGTGATTGTTGGGATGGTTAGGTGGGGGAGGAATTG
GGAGGGGGTTTTGAGGAGGGTGGTTACGGCCAGGTTGAAGGCGCGGAGGT
TGCTGTTGGGGGGTTGCATTGTGTTTTTGGGTGGTTGTAGATGTTGTGAG
TGATGTTGTGTAGTGGGGGAGAACTTGATTAAAGTGATGTTAGATCTCAA
TGCATAGTCGATCTAGATCTAATGTTTGAGGATTGAAGGTGAGAAGAAAA
ATTGTGTACAAAGTGTATCAGATAAATTGGATGGATGAGAAGAG back to topCoding sequence (CDS) from alignment at ch6:3382159..3386452- >KJC3_008897-T1 ID=KJC3_008897-T1|Name=KJC3_008897-T1|organism=Aspergillus niger KJC3|type=CDS|length=5445bp|location=Sequence derived from alignment at ch6:3382159..3386452- (Aspergillus niger KJC3)
TTATCCATCACTTCACCTGTCGCTCCTTGACTATCGGTAGCTGGCGACGT
ATCGGACAAAACGCCATGGATCTGGTGGTATTCTATTCCCCTGAGAAGGC
CTGCATGACGTACTACATCAACAACGATTCTGCTGGATACAAGATCGAGT
ATCCGTTTGCCTACATCAAGAACATCACACTGGAGTCGGGCGACCAGACT
CCTCAGGCAAACGGTGCTCCCCCGCGACCTGGCGGTCTTGTTGTCGAGCT
GAACCGGCCCCCGCTGTTCTACATGGACTCCTCCAACTCGGGCGGATTCT
ACCAGTGTGGTGACTTCACCGAGGATCAGCAGGCAAGCCAAATCCTGGTC
CACCATCTTGGGGGACATCCCAAGGTTCTCAGCGTGCAACTTGCCAAGCT
AGTGTCTCTGGAGTCCTTCCAGAACCGCCTAGCGTACAACAACTTTGCCA
TGAACCCGCCCATGTCCCCTCCGTTTATTCAGCGTCCTGCATCTCAGCCG
AATCAATTCGCTCCGGCTTTCTTGAACGTGTTCCCCGAGAGCCATGCTCA
CCTCAACATTCCGGCGATGCGCGGACACAAGCGTCAGAGGAGTCGCTCAG
TTCCGGTAGCTGTCGACTTCTCTGCCATGCAGGCTCCTCTCGCCCACTAC
AACATGCCCCAGACTCCGGCTCAGTTCAACCATGCCGATACGGGTATCTT
TGCTCCCGTTCCCCAGTCGACTCACCCCTTGGCTGTCAACCTTCGGATAG
ATACCTCTGCCGCCTATGGGTTCGACCCGCGGACTCACCCCATGTCGGCT
ACCACGACAGCTTCCCCATCTGACTTTGCCAGCCCCGGACTTTTCAGCAC
TGGAGCCGGTGGTGACTCAACTCCTGTTGCTACCAACATGGGTACCCCCT
TCAACCTTCCCTTCGTCTCGCCCGCTGTTGACTCAACTGTGGCGCCCCAA
GCATCTTATTCTAACGTCAGTCATGCCGATCCTATGATTGCGAACCATTC
TCCTCCATTGTCGAACATCTCGCACGCTCCCCAAGATATGTACGGCCTGG
GTAACGAGCATCAGCCCAACTACACGGACGATAGCATGTCCATGAATGGG
ATCTATCCCAAGCATAACATGAACTTCGCTGTTCCGGCTTCTATGGGTCT
TGAAACTAACACATATGATCTCCCCATGCAGCCCATGTCCGGCCATACAT
CCCCGGGGGTCCATGGCGATTTCCAGAGCCTGAGCCTGGAGAACGTTGAT
CCCAGCGGTATGGCCCCTGGCTCCTGAACGCGCAAAGATAAAGATGCTTG
CTAAGAAGAGCATCGAAACGGGCGAGGGCTGTGATTCCATCCCCGAGTCG
ATGCGCCAGTACCTGGCCATGCAATTTGACCCCACCAAGCCTGGTGCAAG
GGACCCATTTGGGCGCACGGGAGGATACGGAACCGGTAGTGTTTATCCCC
ATGAGTCGGCTCCTTCTGGCAAAGTTGATGTCTTCGACAGACACTCCTGA
CCCCTCGACCACGTCGAACGCTTCCTCCAACACTGCTTCCACCATGACCT
CGTCTTCGTCGACTACCTCAAGCCCGTCTCCGGCCATGTCCAACTCTACT
ACGGCCGCCTCAGCTTCGGCACGTCGACCTCAGCGGAAGAGCACGCTGAC
CCAGCAGCAGAAGAACAACAAGCGGCAACGGGCGACCCAGGATCAACTGG
TCACCCTCGAACTGGAATTCAACAAGAACCCGACTCCCACGGCAGCCACC
CGCGAAAGAATTGCCCAAGAAATCAACATGACTGAGCGGTCCGTTCAGAT
CTGGTTCCAAAATAGTTATCCATCACTTCACCTGTCGCTCCTTGACTATC
GGTAGCTGGCGACGTATCGGACAAAACGCCATGGATCTGGTGGTATTCTA
TTCCCCTGAGAAGGCCTGCATGACGTACTACATCAACAACGATTCTGCTG
GATACAAGATCGAGTATCCGTTTGCCTACATCAAGAACATCACACTGGAG
TCGGGCGACCAGACTCCTCAGGCAAACGGTGCTCCCCCGCGACCTGGCGG
TCTTGTTGTCGAGCTGAACCGGCCCCCGCTGTTCTACATGGACTCCTCCA
ACTCGGGCGGATTCTACCAGTGTGGTGACTTCACCGAGGATCAGCAGGCA
AGCCAAATCCTGGTCCACCATCTTGGGGGACATCCCAAGGTTCTCAGCGT
GCAACTTGCCAAGCTAGTGTCTCTGGAGTCCTTCCAGAACCGCCTAGCGT
ACAACAACTTTGCCATGAACCCGCCCATGTCCCCTCCGTTTATTCAGCGT
CCTGCATCTCAGCCGAATCAATTCGCTCCGGCTTTCTTGAACGTGTTCCC
CGAGAGCCATGCTCACCTCAACATTCCGGCGATGCGCGGACACAAGCGTC
AGAGGAGTCGCTCAGTTCCGGTAGCTGTCGACTTCTCTGCCATGCAGGCT
CCTCTCGCCCACTACAACATGCCCCAGACTCCGGCTCAGTTCAACCATGC
CGATACGGGTATCTTTGCTCCCGTTCCCCAGTCGACTCACCCCTTGGCTG
TCAACCTTCGGATAGATACCTCTGCCGCCTATGGGTTCGACCCGCGGACT
CACCCCATGTCGGCTACCACGACAGCTTCCCCATCTGACTTTGCCAGCCC
CGGACTTTTCAGCACTGGAGCCGGTGGTGACTCAACTCCTGTTGCTACCA
ACATGGGTACCCCCTTCAACCTTCCCTTCGTCTCGCCCGCTGTTGACTCA
ACTGTGGCGCCCCAAGCATCTTATTCTAACGTCAGTCATGCCGATCCTAT
GATTGCGAACCATTCTCCTCCATTGTCGAACATCTCGCACGCTCCCCAAG
ATATGTACGGCCTGGGTAACGAGCATCAGCCCAACTACACGGACGATAGC
ATGTCCATGAATGGGATCTATCCCAAGCATAACATGAACTTCGCTGTTCC
GGCTTCTATGGGTCTTGAAACTAACACATATGATCTCCCCATGCAGCCCA
TGTCCGGCCATACATCCCCGGGGGTCCATGGCGATTTCCAGAGCCTGAGC
CTGGAGAACGTTGATCCCAGCGGTATGGCCCCTGGCTCCTGAACGCGCAA
AGATAAAGATGCTTGCTAAGAAGAGCATCGAAACGGGCGAGGGCTGTGAT
TCCATCCCCGAGTCGATGCGCCAGTACCTGGCCATGCAATTTGACCCCAC
CAAGCCTGGTGCAAGGGACCCATTTGGGCGCACGGGAGGATACGGAACCG
GTAGTGTTTATCCCCATGAGTCGGCTCCTTCTGGCAAAGTTGATGTCTTC
GACAGACACTCCTGACCCCTCGACCACGTCGAACGCTTCCTCCAACACTG
CTTCCACCATGACCTCGTCTTCGTCGACTACCTCAAGCCCGTCTCCGGCC
ATGTCCAACTCTACTACGGCCGCCTCAGCTTCGGCACGTCGACCTCAGCG
GAAGAGCACGCTGACCCAGCAGCAGAAGAACAACAAGCGGCAACGGGCGA
CCCAGGATCAACTGGTCACCCTCGAACTGGAATTCAACAAGAACCCGACT
CCCACGGCAGCCACCCGCGAAAGAATTGCCCAAGAAATCAACATGACTGA
GCGGTCCGTTCAGATCTGGTTCCAAAATAGTTATCCATCACTTCACCTGT
CGCTCCTTGACTATCGGTAGCTGGCGACGTATCGGACAAAACGCCATGGA
TCTGGTGGTATTCTATTCCCCTGAGAAGGCCTGCATGACGTACTACATCA
ACAACGATTCTGCTGGATACAAGATCGAGTATCCGTTTGCCTACATCAAG
AACATCACACTGGAGTCGGGCGACCAGACTCCTCAGGCAAACGGTGCTCC
CCCGCGACCTGGCGGTCTTGTTGTCGAGCTGAACCGGCCCCCGCTGTTCT
ACATGGACTCCTCCAACTCGGGCGGATTCTACCAGTGTGGTGACTTCACC
GAGGATCAGCAGGCAAGCCAAATCCTGGTCCACCATCTTGGGGGACATCC
CAAGGTTCTCAGCGTGCAACTTGCCAAGCTAGTGTCTCTGGAGTCCTTCC
AGAACCGCCTAGCGTACAACAACTTTGCCATGAACCCGCCCATGTCCCCT
CCGTTTATTCAGCGTCCTGCATCTCAGCCGAATCAATTCGCTCCGGCTTT
CTTGAACGTGTTCCCCGAGAGCCATGCTCACCTCAACATTCCGGCGATGC
GCGGACACAAGCGTCAGAGGAGTCGCTCAGTTCCGGTAGCTGTCGACTTC
TCTGCCATGCAGGCTCCTCTCGCCCACTACAACATGCCCCAGACTCCGGC
TCAGTTCAACCATGCCGATACGGGTATCTTTGCTCCCGTTCCCCAGTCGA
CTCACCCCTTGGCTGTCAACCTTCGGATAGATACCTCTGCCGCCTATGGG
TTCGACCCGCGGACTCACCCCATGTCGGCTACCACGACAGCTTCCCCATC
TGACTTTGCCAGCCCCGGACTTTTCAGCACTGGAGCCGGTGGTGACTCAA
CTCCTGTTGCTACCAACATGGGTACCCCCTTCAACCTTCCCTTCGTCTCG
CCCGCTGTTGACTCAACTGTGGCGCCCCAAGCATCTTATTCTAACGTCAG
TCATGCCGATCCTATGATTGCGAACCATTCTCCTCCATTGTCGAACATCT
CGCACGCTCCCCAAGATATGTACGGCCTGGGTAACGAGCATCAGCCCAAC
TACACGGACGATAGCATGTCCATGAATGGGATCTATCCCAAGCATAACAT
GAACTTCGCTGTTCCGGCTTCTATGGGTCTTGAAACTAACACATATGATC
TCCCCATGCAGCCCATGTCCGGCCATACATCCCCGGGGGTCCATGGCGAT
TTCCAGAGCCTGAGCCTGGAGAACGTTGATCCCAGCGGTATGGCCCCTGG
CTCCTGAACGCGCAAAGATAAAGATGCTTGCTAAGAAGAGCATCGAAACG
GGCGAGGGCTGTGATTCCATCCCCGAGTCGATGCGCCAGTACCTGGCCAT
GCAATTTGACCCCACCAAGCCTGGTGCAAGGGACCCATTTGGGCGCACGG
GAGGATACGGAACCGGTAGTGTTTATCCCCATGAGTCGGCTCCTTCTGGC
AAAGTTGATGTCTTCGACAGACACTCCTGACCCCTCGACCACGTCGAACG
CTTCCTCCAACACTGCTTCCACCATGACCTCGTCTTCGTCGACTACCTCA
AGCCCGTCTCCGGCCATGTCCAACTCTACTACGGCCGCCTCAGCTTCGGC
ACGTCGACCTCAGCGGAAGAGCACGCTGACCCAGCAGCAGAAGAACAACA
AGCGGCAACGGGCGACCCAGGATCAACTGGTCACCCTCGAACTGGAATTC
AACAAGAACCCGACTCCCACGGCAGCCACCCGCGAAAGAATTGCCCAAGA
AATCAACATGACTGAGCGGTCCGTTCAGATCTGGTTCCAAAATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0043565 | sequence-specific DNA binding |
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008897-T1.utr3p1 | KJC3_008897-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008897-T1.utr5p1 | KJC3_008897-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR017970 |
| DBxref | InterPro:IPR001356 |
| DBxref | PFAM:PF00046 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3382159..3386452 - |
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