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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3395267..3396196+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008899-T1 ID=KJC3_008899-T1|Name=KJC3_008899-T1|organism=Aspergillus niger KJC3|type=mRNA|length=930bp|location=Sequence derived from alignment at ch6:3395267..3396196+ (Aspergillus niger KJC3)
GTGTGGTTGCCTTCTATCATCACGTGGCTTTGCTGACTGCCTCTCTATTT
ATATTGCATCTCTCTGTCCCTGTGCCAGATTCTGCTGACGATTTGCGGAC
TGCCATACGTGGTACTACTCTTTGAGTATCACATATTCGATCAGTGTCAA
TATGCCCCCGCCTACTCCCTCTGTACCTGAGGGTTGGAAAGCCGAATTTG
ACATTCGATATCAACAATGGTAGGTATCAAACTCTCTCTCTCTTCCCTCT
TCCTTTTTACTTCATCTCTGTGTGGACACCACTGACGGCCCTACTACATT
CTAACAGGTATTACATCAATATCCATACCAGACAGTCACACTGGGAACGA
CCAGACCAGCCAGCCCCGCCTGCTGGACCGGTTCCGCCTCCTGAGGGGGC
CCCACCCAGTCGTGAGGCTACTACTACTACCACTCCTACTACTACGCGCG
ATCGACCAGTCGGCCATCCGAATCCAGAAGACCATGACCTACCCGAAGTG
TACACTCCACAGCCTTCGTCGCAGTCTGCCTACGCGCCAAACGCGCCAAA
CCCAGGACAAGGATATCACAGCTACTCGCAGTCACAACACAGATATGACG
GCTATAGCTACAACCCTACTTATTCCCCGTATCCTGCATATCCTAATCAG
TATCCCAATCCGTACCAAAACACCTATGATCAATCCCAGCCTCCCTACAA
CCAGACGAAAAAGAAAGGGTTAGGGAAGAAAATTGCAGCTGCCCTAGGAT
TAGGCGGAGGATTAGTCAGTGGGATTCTGCTTGGGGAGAGTACCTAAGCA
CTACAAGTGCAAGATGATTTTGTCAGTCTGCCACTGCCACTGTTTCTGAT
GTCAGACCTCAGTCTCCCATACCCCATCATGTGACTGCTATGTTGAAGTT
ATATATTGATAGATAATTAGGTAATAAGAG back to topCoding sequence (CDS) from alignment at ch6:3395267..3396196+ >KJC3_008899-T1 ID=KJC3_008899-T1|Name=KJC3_008899-T1|organism=Aspergillus niger KJC3|type=CDS|length=1116bp|location=Sequence derived from alignment at ch6:3395267..3396196+ (Aspergillus niger KJC3)
ATGCCCCCGCCTACTCCCTCTGTACCTGAGGGTTGGAAAGCCGAATTTGA
CATTCGATATCAACAATGGTATTACATCAATATCCATACCAGACAGTCAC
ACTGGGAACGACCAGACCAGCCAGCCCCGCCTGCTGGACCGGTTCCGCCT
CCTGAGGGGGCCCCACCCAGTCGTGAGGCTACTACTACTACCACTCCTAC
TACTACGCGCGATCGACCAGTCGGCCATCCGAATCCAGAAGACCATGACC
TACCCGAAGTGTACACTCCACAGCCTTCGTCGCAGTCTGCCTACGCGCCA
AACGCGCCAAACCCAGGACAAGGATATCACAGCTACTCGCAGTCACAACA
CAGATATGACGGCTATAGCTACAACCCTACTTATTCCCCGTATCCTGCAT
ATCCTAATCAGTATCCCAATCCGTACCAAAACACCTATGATCAATCCCAG
CCTCCCTACAACCAGACGAAAAAGAAAGGGTTAGGGAAGAAAATTGCAGC
TGCCCTAGGATTAGGCGGAGGATTAGTCAGTGGGATTCTGCTTGGGGAGA
GTACCTAAATGCCCCCGCCTACTCCCTCTGTACCTGAGGGTTGGAAAGCC
GAATTTGACATTCGATATCAACAATGGTATTACATCAATATCCATACCAG
ACAGTCACACTGGGAACGACCAGACCAGCCAGCCCCGCCTGCTGGACCGG
TTCCGCCTCCTGAGGGGGCCCCACCCAGTCGTGAGGCTACTACTACTACC
ACTCCTACTACTACGCGCGATCGACCAGTCGGCCATCCGAATCCAGAAGA
CCATGACCTACCCGAAGTGTACACTCCACAGCCTTCGTCGCAGTCTGCCT
ACGCGCCAAACGCGCCAAACCCAGGACAAGGATATCACAGCTACTCGCAG
TCACAACACAGATATGACGGCTATAGCTACAACCCTACTTATTCCCCGTA
TCCTGCATATCCTAATCAGTATCCCAATCCGTACCAAAACACCTATGATC
AATCCCAGCCTCCCTACAACCAGACGAAAAAGAAAGGGTTAGGGAAGAAA
ATTGCAGCTGCCCTAGGATTAGGCGGAGGATTAGTCAGTGGGATTCTGCT
TGGGGAGAGTACCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008899-T1.utr5p1 | KJC3_008899-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008899-T1.utr3p1 | KJC3_008899-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036020 |
| DBxref | InterPro:IPR001202 |
| DBxref | PFAM:PF00397 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3395267..3396196 + |
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