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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3474318..3476166+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008917-T1 ID=KJC3_008917-T1|Name=KJC3_008917-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1849bp|location=Sequence derived from alignment at ch6:3474318..3476166+ (Aspergillus niger KJC3)
CTGGATATGCCAGACCCAAAGTCTAGACGGATCTCAGTACGTCGCTGTGG
CTCAATCAGAGACAGAGTCGGGGATAAAATGTGAGAGTGGAGCCCCGAGG
ACCCAGACGGCCCAGGTATTGTTTACTGTTGGTACTCGCAGTGGAGGTGG
GCCAGTGAACAGCCACAGAAGATGAAGGAAAAGCGAGTCGGAGGTCGGAG
TGGGAATTAATGCCAGTTGGGGTCGAAGTGTTGCTGGGGGCGGTGTTTGA
CCAGTTTGCACCTTTGTGGCCTGGACTCCAAGGCAGTCAATAATGTCTCC
AAGTCGTGACGGGTCACATGGCCGAAAAAGCCACGGACAGTCCAATCAGT
CCTACTAGAGCTCCGTCTGAGTGGTATAGTCGAAGCAACATAAGCTACTG
CTATTGTATTCCTCTGGGTATGTCTAGATGATTTTCCACAAATAGCTCGA
TCCAATCAATACTCAATATACTGATGTATAAATAGACATAAACGCATTGC
ACTCCGAATGAGTTACTTGTGCTGCGTGATTACCACCAGACTCACTACTA
ATTATTGAACCATACTATTGTGATTGGCTCTTACACATCTCTACTGCACT
CAATTTCCTTGCGTTCAAGAAGATACCCCTCTTGCTTTCTCAAACTTGGC
ACGTGAATGCCTTCGTAGGCGCCTTACTCAAGATCAAGAAAAACCATCCA
TAGAGCTATATCATCTATCAAGAGAACTACCAGTCACTACAAAATGCCTA
TCACAGGGTAAGCGCTGATCAGTCATCACATATACTCACATCATGCTGAC
TCCAACCAACCAGAGTCTACTTCATCCCCTCCAACCCAAATGCATCCACA
GGGCTAGCGACTATCACAGAGCGCCTACACACAGCCCTAGCAGACGAGCC
AACATTAGTAGGCCGTTGGTTCCTCGAACACCGACTAATGCGCGATACTC
CATCATGTGTTCCTGCCTCAGCATCCCAGCGCCAAGTACAACCGCGCTAT
ATGCAATTCCTATCACTGTCTTTTCACTCTAACCACGGCTTCATCTACAC
CTCTGAAGCACTAGAGAAAAGCACTCATCATTCCACCACCAGTGTTAGCA
CCACGCCAGCTGGCTCACCCACCAATTCTACTGCTCAAAGTGGAGCTCCA
GGCGCAACAGCGCCCACCCCTTCCACCCCATCTAATGCTGCTGCACAGTC
AGGAGGACCAATGGTGATGACCACCGTGCCGCTTCCATCCTGTAATGCAC
TTTTCCAGCACTTCGGCTACGCCTGCCAGCCTTTCTGGTGCCATCGACAC
ACGGTAACCGTACCAGGCGGTGTGGTCTACGATGTGGGCGATTTCCGAGT
CCGAGTGGGTGATGTACGACAGACTCAGCCAGCAGCGAGGGTGCGCGGAA
CAGTTGTGGAAATTGAATGGCGGGGTCCGTGCATAGTTGATGCGATTTCA
GCACCACGGAATTCGAGCGACGGACAAATAGCTGATGATGGCGACTCCGG
GATTGATATGGCGTTCCCGGATGCTATTGAAGACGCGGATATTGATGCAG
AGTATGCGGCTAGTGCGGCGTTGATTAGGGAGTTCTGGGCGAGACTCGGC
ATTGAAGGAGCCAGAGAAGCTATTTTGTTGCCGGATGTAGGCAAGGAAGC
CAAGGATCGGTTGAGGAGATTGAAGCAGAAGGGCCGAAATACTGTTTCTA
ACGAGGCGAGTCTACAGCAAGCGGAGGAGGATCCGGATCCGGATGCGGGT
GTGGATGTGGCGAGGCAGTTTATGGAGATTTTTAGGTTTAATCGGTAAAG
ATAGCAGACCTCGATAATGAGATCCATGATATAAATTTGGATTATGTAG back to topCoding sequence (CDS) from alignment at ch6:3474318..3476166+ >KJC3_008917-T1 ID=KJC3_008917-T1|Name=KJC3_008917-T1|organism=Aspergillus niger KJC3|type=CDS|length=1998bp|location=Sequence derived from alignment at ch6:3474318..3476166+ (Aspergillus niger KJC3)
ATGCCTATCACAGGAGTCTACTTCATCCCCTCCAACCCAAATGCATCCAC
AGGGCTAGCGACTATCACAGAGCGCCTACACACAGCCCTAGCAGACGAGC
CAACATTAGTAGGCCGTTGGTTCCTCGAACACCGACTAATGCGCGATACT
CCATCATGTGTTCCTGCCTCAGCATCCCAGCGCCAAGTACAACCGCGCTA
TATGCAATTCCTATCACTGTCTTTTCACTCTAACCACGGCTTCATCTACA
CCTCTGAAGCACTAGAGAAAAGCACTCATCATTCCACCACCAGTGTTAGC
ACCACGCCAGCTGGCTCACCCACCAATTCTACTGCTCAAAGTGGAGCTCC
AGGCGCAACAGCGCCCACCCCTTCCACCCCATCTAATGCTGCTGCACAGT
CAGGAGGACCAATGGTGATGACCACCGTGCCGCTTCCATCCTGTAATGCA
CTTTTCCAGCACTTCGGCTACGCCTGCCAGCCTTTCTGGTGCCATCGACA
CACGGTAACCGTACCAGGCGGTGTGGTCTACGATGTGGGCGATTTCCGAG
TCCGAGTGGGTGATGTACGACAGACTCAGCCAGCAGCGAGGGTGCGCGGA
ACAGTTGTGGAAATTGAATGGCGGGGTCCGTGCATAGTTGATGCGATTTC
AGCACCACGGAATTCGAGCGACGGACAAATAGCTGATGATGGCGACTCCG
GGATTGATATGGCGTTCCCGGATGCTATTGAAGACGCGGATATTGATGCA
GAGTATGCGGCTAGTGCGGCGTTGATTAGGGAGTTCTGGGCGAGACTCGG
CATTGAAGGAGCCAGAGAAGCTATTTTGTTGCCGGATGTAGGCAAGGAAG
CCAAGGATCGGTTGAGGAGATTGAAGCAGAAGGGCCGAAATACTGTTTCT
AACGAGGCGAGTCTACAGCAAGCGGAGGAGGATCCGGATCCGGATGCGGG
TGTGGATGTGGCGAGGCAGTTTATGGAGATTTTTAGGTTTAATCGGTAAA
TGCCTATCACAGGAGTCTACTTCATCCCCTCCAACCCAAATGCATCCACA
GGGCTAGCGACTATCACAGAGCGCCTACACACAGCCCTAGCAGACGAGCC
AACATTAGTAGGCCGTTGGTTCCTCGAACACCGACTAATGCGCGATACTC
CATCATGTGTTCCTGCCTCAGCATCCCAGCGCCAAGTACAACCGCGCTAT
ATGCAATTCCTATCACTGTCTTTTCACTCTAACCACGGCTTCATCTACAC
CTCTGAAGCACTAGAGAAAAGCACTCATCATTCCACCACCAGTGTTAGCA
CCACGCCAGCTGGCTCACCCACCAATTCTACTGCTCAAAGTGGAGCTCCA
GGCGCAACAGCGCCCACCCCTTCCACCCCATCTAATGCTGCTGCACAGTC
AGGAGGACCAATGGTGATGACCACCGTGCCGCTTCCATCCTGTAATGCAC
TTTTCCAGCACTTCGGCTACGCCTGCCAGCCTTTCTGGTGCCATCGACAC
ACGGTAACCGTACCAGGCGGTGTGGTCTACGATGTGGGCGATTTCCGAGT
CCGAGTGGGTGATGTACGACAGACTCAGCCAGCAGCGAGGGTGCGCGGAA
CAGTTGTGGAAATTGAATGGCGGGGTCCGTGCATAGTTGATGCGATTTCA
GCACCACGGAATTCGAGCGACGGACAAATAGCTGATGATGGCGACTCCGG
GATTGATATGGCGTTCCCGGATGCTATTGAAGACGCGGATATTGATGCAG
AGTATGCGGCTAGTGCGGCGTTGATTAGGGAGTTCTGGGCGAGACTCGGC
ATTGAAGGAGCCAGAGAAGCTATTTTGTTGCCGGATGTAGGCAAGGAAGC
CAAGGATCGGTTGAGGAGATTGAAGCAGAAGGGCCGAAATACTGTTTCTA
ACGAGGCGAGTCTACAGCAAGCGGAGGAGGATCCGGATCCGGATGCGGGT
GTGGATGTGGCGAGGCAGTTTATGGAGATTTTTAGGTTTAATCGGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008917-T1.utr3p1 | KJC3_008917-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013921 |
| DBxref | PFAM:PF08612 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3474318..3476166 + |
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