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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3491392..3493341- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008925-T1 ID=KJC3_008925-T1|Name=KJC3_008925-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1950bp|location=Sequence derived from alignment at ch6:3491392..3493341- (Aspergillus niger KJC3)
CTTCCCTCTTCTTCTCTTCCTTCCTCCGCCACGTCGCCAGTTTCCTCGCC
CGTCCGTTCCCCAGTCCGTCCAATTCCCCATTCCTCATCATGGCGGGCCT
GTTCAAGAACGTCTTTGGCGGTTCCCAGCCCTCGAACCCAGCCAAGGTTG
ACGATGGTGAGTCTCACAACACGCACGCCCCAAACCCCAGCTTTTACCTC
GACCTTTGTACCCCAGGAAAACCAACTCTTCCCCAAACTCTCTTCAATTG
CTCTCTTAACCCTAGCACAACGTAACAAACGCTTCACTAATCACCGTCTC
CAATGCAGACTTCGCCGACTTCGTCGAAGCTCCGGAACCCTCCCCGGCCT
CCCTCGTCGCCGGGTCCTCATCCATCCCAGCCGTGAACACCCAAGGCGTC
ACCCCGGTCCCCTACACCAAATGGTATCGGGTATGGGAGCGGACCTCGCC
ACGAGACTTCATGCAAGAAGCGACCGTGATGCCCATCATCCTCCTAATCA
TCCTCTTCCACTTCTGGGGCACGCGCAAGAACCGCCGCAAGGCGCGCGAC
TGGGCGCAAGCCCACACCTCCGCCCTGCAAAGCGAGTTCGCCGTTGTGGG
TTTCGACGGCCCCAGCAGCAGCAACAGCGAAGGACAACCTGCCCCCGAAT
CCCTCCTCAAGGAACGCTCCGCTCAAGAATTCGCCTCCTACGCGACCGGT
CGTCAGAACGTGGCATTCGTGGACGTGGCCATCAAGCTCCCCAAACGGTA
CAACCCCGTCACTTTCTGGACGGAGACTGTCCTGGGCTTCTTGTTTGAGA
GCTGGACCCCGCCGACGGAGACTTACGAGGCCACGGCGTACACCTTCGAC
GGAAAGGAGAAGGACGTTGTCCCGCTTCCGGCCAATGATCGTTCTTCGTT
GAAAGTTAACAACTCCACCTATGATGGATTTATCTGGGCTGTTGTACACA
AGAATTACATGCGGAAGTTCCGTCAGGATCGCTATGATGCGAGCATCACT
TTCACCAGGGATAACAACAAGTTGCCTAATTGGGTTACGGTCATGACCGA
GAGTGCGGAGATCACGGATGCTTTGCTCACGAACGAGTTGGCCCAGGCTA
TTGAGAAGGCCGGCAATGACTTCAAGTACTTGATTGTTACTGACCAGCCC
GTTGAAAAGCCTATGAAGTGAGTTTCCCCCTTCCTAAACAGTTTCATCTA
TCCCCCAAACCGAGCACGCGTGCTAATTAACACCATGTGACCAGAATCGA
GGAAACCACCCCCCGCAAGCGCATCGAACTGTCCGTCACTCTCCCCAGCA
ACGCAGAAGGCTACACCACCACCCTGCCTCTATTCACGCAATTCCTCCGC
TTCGCCGACCGCCTCGTTGGCGCCGCCCACTTCCGGCCTGAAGTGATGCG
CAAGGTGCGGGGCACTCGCGAGGAAGAGATCAAGAAGCTGCGTCGTGCGG
ATGAGGAGGAGAAGGCCGAGGAGCGCAGACTTGCCGCCGAGAAGGTCAAG
AAGGAAGACAGGGAACGTCTCCTGCGTGGTATGTCTGCGGAGGAGCAGAA
GAAGTACCTGGAGCGTGAGCAGCAGAAGGAGCACCGCCGGATGATGAAGA
AGAGTACCCGTCGGGCGTGAGCTCTGTTCTGTTCTGTTCTGTTCTTTTCC
TTCATTGAACGAACTGTGGATTGGGTTGATGGGGGAAATCATGGGCGTCT
TTTATTGACTGCCTGCTGATTTATGTGGTGTGGTGATGCTGATGTTCGTT
CGTTGTATATCTTCATGTACAATGTATTCGTAATTCTTTTCTCTTTTTGG
GATGATATGGAACGGGGCTGCATTGGTTGGGGAGATGATTCCGTGGGGTC
AGTCAGTGTTGACTGACTGGTTTAATTGATCTACTAATGTATCTTGATGG
CGTGATGGCCTTCTGGTTCAGAGTGGTTCCTTTGTATGAGAAGTGACCCA
back to topCoding sequence (CDS) from alignment at ch6:3491392..3493341- >KJC3_008925-T1 ID=KJC3_008925-T1|Name=KJC3_008925-T1|organism=Aspergillus niger KJC3|type=CDS|length=3906bp|location=Sequence derived from alignment at ch6:3491392..3493341- (Aspergillus niger KJC3)
AATCGAGGAAACCACCCCCCGCAAGCGCATCGAACTGTCCGTCACTCTCC
CCAGCAACGCAGAAGGCTACACCACCACCCTGCCTCTATTCACGCAATTC
CTCCGCTTCGCCGACCGCCTCGTTGGCGCCGCCCACTTCCGGCCTGAAGT
GATGCGCAAGGTGCGGGGCACTCGCGAGGAAGAGATCAAGAAGCTGCGTC
GTGCGGATGAGGAGGAGAAGGCCGAGGAGCGCAGACTTGCCGCCGAGAAG
GTCAAGAAGGAAGACAGGGAACGTCTCCTGCGTGGTATGTCTGCGGAGGA
GCAGAAGAAGTACCTGGAGCGTGAGCAGCAGAAGGAGCACCGCCGGATGA
TGAAGAAGAGTACCCGTCGGGCGTGAACTTCGCCGACTTCGTCGAAGCTC
CGGAACCCTCCCCGGCCTCCCTCGTCGCCGGGTCCTCATCCATCCCAGCC
GTGAACACCCAAGGCGTCACCCCGGTCCCCTACACCAAATGGTATCGGGT
ATGGGAGCGGACCTCGCCACGAGACTTCATGCAAGAAGCGACCGTGATGC
CCATCATCCTCCTAATCATCCTCTTCCACTTCTGGGGCACGCGCAAGAAC
CGCCGCAAGGCGCGCGACTGGGCGCAAGCCCACACCTCCGCCCTGCAAAG
CGAGTTCGCCGTTGTGGGTTTCGACGGCCCCAGCAGCAGCAACAGCGAAG
GACAACCTGCCCCCGAATCCCTCCTCAAGGAACGCTCCGCTCAAGAATTC
GCCTCCTACGCGACCGGTCGTCAGAACGTGGCATTCGTGGACGTGGCCAT
CAAGCTCCCCAAACGGTACAACCCCGTCACTTTCTGGACGGAGACTGTCC
TGGGCTTCTTGTTTGAGAGCTGGACCCCGCCGACGGAGACTTACGAGGCC
ACGGCGTACACCTTCGACGGAAAGGAGAAGGACGTTGTCCCGCTTCCGGC
CAATGATCGTTCTTCGTTGAAAGTTAACAACTCCACCTATGATGGATTTA
TCTGGGCTGTTGTACACAAGAATTACATGCGGAAGTTCCGTCAGGATCGC
TATGATGCGAGCATCACTTTCACCAGGGATAACAACAAGTTGCCTAATTG
GGTTACGGTCATGACCGAGAGTGCGGAGATCACGGATGCTTTGCTCACGA
ACGAGTTGGCCCAGGCTATTGAGAAGGCCGGCAATGACTTCAAGTACTTG
ATTGTTACTGACCAGCCCGTTGAAAAGCCTATGAAATGGCGGGCCTGTTC
AAGAACGTCTTTGGCGGTTCCCAGCCCTCGAACCCAGCCAAGGTTGACGA
TGAATCGAGGAAACCACCCCCCGCAAGCGCATCGAACTGTCCGTCACTCT
CCCCAGCAACGCAGAAGGCTACACCACCACCCTGCCTCTATTCACGCAAT
TCCTCCGCTTCGCCGACCGCCTCGTTGGCGCCGCCCACTTCCGGCCTGAA
GTGATGCGCAAGGTGCGGGGCACTCGCGAGGAAGAGATCAAGAAGCTGCG
TCGTGCGGATGAGGAGGAGAAGGCCGAGGAGCGCAGACTTGCCGCCGAGA
AGGTCAAGAAGGAAGACAGGGAACGTCTCCTGCGTGGTATGTCTGCGGAG
GAGCAGAAGAAGTACCTGGAGCGTGAGCAGCAGAAGGAGCACCGCCGGAT
GATGAAGAAGAGTACCCGTCGGGCGTGAACTTCGCCGACTTCGTCGAAGC
TCCGGAACCCTCCCCGGCCTCCCTCGTCGCCGGGTCCTCATCCATCCCAG
CCGTGAACACCCAAGGCGTCACCCCGGTCCCCTACACCAAATGGTATCGG
GTATGGGAGCGGACCTCGCCACGAGACTTCATGCAAGAAGCGACCGTGAT
GCCCATCATCCTCCTAATCATCCTCTTCCACTTCTGGGGCACGCGCAAGA
ACCGCCGCAAGGCGCGCGACTGGGCGCAAGCCCACACCTCCGCCCTGCAA
AGCGAGTTCGCCGTTGTGGGTTTCGACGGCCCCAGCAGCAGCAACAGCGA
AGGACAACCTGCCCCCGAATCCCTCCTCAAGGAACGCTCCGCTCAAGAAT
TCGCCTCCTACGCGACCGGTCGTCAGAACGTGGCATTCGTGGACGTGGCC
ATCAAGCTCCCCAAACGGTACAACCCCGTCACTTTCTGGACGGAGACTGT
CCTGGGCTTCTTGTTTGAGAGCTGGACCCCGCCGACGGAGACTTACGAGG
CCACGGCGTACACCTTCGACGGAAAGGAGAAGGACGTTGTCCCGCTTCCG
GCCAATGATCGTTCTTCGTTGAAAGTTAACAACTCCACCTATGATGGATT
TATCTGGGCTGTTGTACACAAGAATTACATGCGGAAGTTCCGTCAGGATC
GCTATGATGCGAGCATCACTTTCACCAGGGATAACAACAAGTTGCCTAAT
TGGGTTACGGTCATGACCGAGAGTGCGGAGATCACGGATGCTTTGCTCAC
GAACGAGTTGGCCCAGGCTATTGAGAAGGCCGGCAATGACTTCAAGTACT
TGATTGTTACTGACCAGCCCGTTGAAAAGCCTATGAAATGGCGGGCCTGT
TCAAGAACGTCTTTGGCGGTTCCCAGCCCTCGAACCCAGCCAAGGTTGAC
GATGAATCGAGGAAACCACCCCCCGCAAGCGCATCGAACTGTCCGTCACT
CTCCCCAGCAACGCAGAAGGCTACACCACCACCCTGCCTCTATTCACGCA
ATTCCTCCGCTTCGCCGACCGCCTCGTTGGCGCCGCCCACTTCCGGCCTG
AAGTGATGCGCAAGGTGCGGGGCACTCGCGAGGAAGAGATCAAGAAGCTG
CGTCGTGCGGATGAGGAGGAGAAGGCCGAGGAGCGCAGACTTGCCGCCGA
GAAGGTCAAGAAGGAAGACAGGGAACGTCTCCTGCGTGGTATGTCTGCGG
AGGAGCAGAAGAAGTACCTGGAGCGTGAGCAGCAGAAGGAGCACCGCCGG
ATGATGAAGAAGAGTACCCGTCGGGCGTGAACTTCGCCGACTTCGTCGAA
GCTCCGGAACCCTCCCCGGCCTCCCTCGTCGCCGGGTCCTCATCCATCCC
AGCCGTGAACACCCAAGGCGTCACCCCGGTCCCCTACACCAAATGGTATC
GGGTATGGGAGCGGACCTCGCCACGAGACTTCATGCAAGAAGCGACCGTG
ATGCCCATCATCCTCCTAATCATCCTCTTCCACTTCTGGGGCACGCGCAA
GAACCGCCGCAAGGCGCGCGACTGGGCGCAAGCCCACACCTCCGCCCTGC
AAAGCGAGTTCGCCGTTGTGGGTTTCGACGGCCCCAGCAGCAGCAACAGC
GAAGGACAACCTGCCCCCGAATCCCTCCTCAAGGAACGCTCCGCTCAAGA
ATTCGCCTCCTACGCGACCGGTCGTCAGAACGTGGCATTCGTGGACGTGG
CCATCAAGCTCCCCAAACGGTACAACCCCGTCACTTTCTGGACGGAGACT
GTCCTGGGCTTCTTGTTTGAGAGCTGGACCCCGCCGACGGAGACTTACGA
GGCCACGGCGTACACCTTCGACGGAAAGGAGAAGGACGTTGTCCCGCTTC
CGGCCAATGATCGTTCTTCGTTGAAAGTTAACAACTCCACCTATGATGGA
TTTATCTGGGCTGTTGTACACAAGAATTACATGCGGAAGTTCCGTCAGGA
TCGCTATGATGCGAGCATCACTTTCACCAGGGATAACAACAAGTTGCCTA
ATTGGGTTACGGTCATGACCGAGAGTGCGGAGATCACGGATGCTTTGCTC
ACGAACGAGTTGGCCCAGGCTATTGAGAAGGCCGGCAATGACTTCAAGTA
CTTGATTGTTACTGACCAGCCCGTTGAAAAGCCTATGAAATGGCGGGCCT
GTTCAAGAACGTCTTTGGCGGTTCCCAGCCCTCGAACCCAGCCAAGGTTG
ACGATG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008925-T1.utr3p1 | KJC3_008925-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008925-T1.utr5p1 | KJC3_008925-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012879 |
| DBxref | PFAM:PF07946 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3491392..3493341 - |
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