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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3531022..3532494- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008943-T1 ID=KJC3_008943-T1|Name=KJC3_008943-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1473bp|location=Sequence derived from alignment at ch6:3531022..3532494- (Aspergillus niger KJC3)
ATCCACCTTCGTTTGCTTCACCTCTCGCCCCTATACTCAAGGTTTTCAAA
TTAGCCAACTATCCTTACAAGACTATCTCAACGGTCTTCTTTCGGGGCCT
TACTCATCACTCCTATCTATTTGCAGCATGCCTGCCGAGCAGTCTGCGGC
CAGCCCTTCTGGCGCCAAGGAAATCTCCAAGCCGTCCGCAGAGAATGACC
AAGCCGGCGATGATCGCAACGAACCTACATCGCCTTCAAAAGAGAAGACG
AAGGGAAAATCAGGTGAAGAGGCTAGCGTGGATGAGGCCAGTACGGACCA
AAAAGACGATGATGCTGCTTCGAGAGCCCGCCAACGACAAGAAAGGTTCA
AGGCTCTCCAGGCTCGCGCAGTAAGTTCATGATAGCGAAGATTCATTGTG
CGCTGTGTTCATACTGACATAGTTTTAGAAAACTGCTACCGAGCGGAATC
TGAAAGAAACGGCTGCCGAAACACAGCGTCTCGCAACCGATCCGTCGCTG
CTTTCCTCGCTCTCTCGCAAACATGCTTTCGCATCGCATAACCTTCTCAA
GGCTGACACAGAAGCCGCTGGCGAGGACTTCGAACGTAAGCGTGCATGGG
ACTGGACTGTCGATGAGTCCGAAAAATGGGACAAGCGCATGGAAAAGAAG
CAGCGTCATCGGGACAATGTCGCATTCCAGGACTACACCCAAGACGCGCG
AAAAGTGTATAAGAGACAGCTGCGGGAAGTACAGCCTGACCTTGAAACCT
ACGAGAGGGAGAAGATGGCAGCGATCGAAAAGGCTGCTGCCAATGGCGAT
CTCGAGATCGTTGAGACCAACGACGGTGAAATGATCGCCGTCGATAAGAA
CGGCTCTTTCTACTCTACAGCTGACAGTGTTGGCTTTACGGAGAACAAGC
CCGACAGAGCTGCTGTTGACAAGCTCGTGGATAATCTTCGGAAAGCCGAG
GAAGTCCGACTCAAGAAGCGGAGGGACCGCCGCGGAGACGATGACGGCGA
CGTCACTTACATCAACGAAAAGAACAAGCAGTTCAACCAGAAATTATCAA
GATTCTATAATAAGGTGAGTTTTCACTCTGCCATTTGTCAAAGGGGCTAG
CTAATTGTTTTCCAGTACACTACGGAGATTCGCGACAGCTTCGAGCGTGG
TACGATGATCTGATTTACGCTAAGGAAATCCGAACCTGCAGGACAGTTCA
AACGTACAATCGCCTTGCAAAGGACCTGCATGACAGCAACCTTATGTGTG
TGCTCTGTCAATTTTCGTTTCTCTGCACCTCGTTCCGGACTATACTGGAC
AACTGCAAAGAAGGCGTCCGACGAATTCCCCTTGCAGGGTCCGCTACCCT
GCTTGACGAAGTTGGCATACCGGTTATAGCACATACAAGCCGCACCTATC
TCAGTCATGCCATCACCTTGACCAAGATCTCAAGCTACTTGACGGTCTTT
AGACTGGTTGCCCTTGAAACACG back to topCoding sequence (CDS) from alignment at ch6:3531022..3532494- >KJC3_008943-T1 ID=KJC3_008943-T1|Name=KJC3_008943-T1|organism=Aspergillus niger KJC3|type=CDS|length=2781bp|location=Sequence derived from alignment at ch6:3531022..3532494- (Aspergillus niger KJC3)
TACACTACGGAGATTCGCGACAGCTTCGAGCGTGGTACGATGATCTGAAA
AACTGCTACCGAGCGGAATCTGAAAGAAACGGCTGCCGAAACACAGCGTC
TCGCAACCGATCCGTCGCTGCTTTCCTCGCTCTCTCGCAAACATGCTTTC
GCATCGCATAACCTTCTCAAGGCTGACACAGAAGCCGCTGGCGAGGACTT
CGAACGTAAGCGTGCATGGGACTGGACTGTCGATGAGTCCGAAAAATGGG
ACAAGCGCATGGAAAAGAAGCAGCGTCATCGGGACAATGTCGCATTCCAG
GACTACACCCAAGACGCGCGAAAAGTGTATAAGAGACAGCTGCGGGAAGT
ACAGCCTGACCTTGAAACCTACGAGAGGGAGAAGATGGCAGCGATCGAAA
AGGCTGCTGCCAATGGCGATCTCGAGATCGTTGAGACCAACGACGGTGAA
ATGATCGCCGTCGATAAGAACGGCTCTTTCTACTCTACAGCTGACAGTGT
TGGCTTTACGGAGAACAAGCCCGACAGAGCTGCTGTTGACAAGCTCGTGG
ATAATCTTCGGAAAGCCGAGGAAGTCCGACTCAAGAAGCGGAGGGACCGC
CGCGGAGACGATGACGGCGACGTCACTTACATCAACGAAAAGAACAAGCA
GTTCAACCAGAAATTATCAAGATTCTATAATAAGATGCCTGCCGAGCAGT
CTGCGGCCAGCCCTTCTGGCGCCAAGGAAATCTCCAAGCCGTCCGCAGAG
AATGACCAAGCCGGCGATGATCGCAACGAACCTACATCGCCTTCAAAAGA
GAAGACGAAGGGAAAATCAGGTGAAGAGGCTAGCGTGGATGAGGCCAGTA
CGGACCAAAAAGACGATGATGCTGCTTCGAGAGCCCGCCAACGACAAGAA
AGGTTCAAGGCTCTCCAGGCTCGCGCATACACTACGGAGATTCGCGACAG
CTTCGAGCGTGGTACGATGATCTGAAAAACTGCTACCGAGCGGAATCTGA
AAGAAACGGCTGCCGAAACACAGCGTCTCGCAACCGATCCGTCGCTGCTT
TCCTCGCTCTCTCGCAAACATGCTTTCGCATCGCATAACCTTCTCAAGGC
TGACACAGAAGCCGCTGGCGAGGACTTCGAACGTAAGCGTGCATGGGACT
GGACTGTCGATGAGTCCGAAAAATGGGACAAGCGCATGGAAAAGAAGCAG
CGTCATCGGGACAATGTCGCATTCCAGGACTACACCCAAGACGCGCGAAA
AGTGTATAAGAGACAGCTGCGGGAAGTACAGCCTGACCTTGAAACCTACG
AGAGGGAGAAGATGGCAGCGATCGAAAAGGCTGCTGCCAATGGCGATCTC
GAGATCGTTGAGACCAACGACGGTGAAATGATCGCCGTCGATAAGAACGG
CTCTTTCTACTCTACAGCTGACAGTGTTGGCTTTACGGAGAACAAGCCCG
ACAGAGCTGCTGTTGACAAGCTCGTGGATAATCTTCGGAAAGCCGAGGAA
GTCCGACTCAAGAAGCGGAGGGACCGCCGCGGAGACGATGACGGCGACGT
CACTTACATCAACGAAAAGAACAAGCAGTTCAACCAGAAATTATCAAGAT
TCTATAATAAGATGCCTGCCGAGCAGTCTGCGGCCAGCCCTTCTGGCGCC
AAGGAAATCTCCAAGCCGTCCGCAGAGAATGACCAAGCCGGCGATGATCG
CAACGAACCTACATCGCCTTCAAAAGAGAAGACGAAGGGAAAATCAGGTG
AAGAGGCTAGCGTGGATGAGGCCAGTACGGACCAAAAAGACGATGATGCT
GCTTCGAGAGCCCGCCAACGACAAGAAAGGTTCAAGGCTCTCCAGGCTCG
CGCATACACTACGGAGATTCGCGACAGCTTCGAGCGTGGTACGATGATCT
GAAAAACTGCTACCGAGCGGAATCTGAAAGAAACGGCTGCCGAAACACAG
CGTCTCGCAACCGATCCGTCGCTGCTTTCCTCGCTCTCTCGCAAACATGC
TTTCGCATCGCATAACCTTCTCAAGGCTGACACAGAAGCCGCTGGCGAGG
ACTTCGAACGTAAGCGTGCATGGGACTGGACTGTCGATGAGTCCGAAAAA
TGGGACAAGCGCATGGAAAAGAAGCAGCGTCATCGGGACAATGTCGCATT
CCAGGACTACACCCAAGACGCGCGAAAAGTGTATAAGAGACAGCTGCGGG
AAGTACAGCCTGACCTTGAAACCTACGAGAGGGAGAAGATGGCAGCGATC
GAAAAGGCTGCTGCCAATGGCGATCTCGAGATCGTTGAGACCAACGACGG
TGAAATGATCGCCGTCGATAAGAACGGCTCTTTCTACTCTACAGCTGACA
GTGTTGGCTTTACGGAGAACAAGCCCGACAGAGCTGCTGTTGACAAGCTC
GTGGATAATCTTCGGAAAGCCGAGGAAGTCCGACTCAAGAAGCGGAGGGA
CCGCCGCGGAGACGATGACGGCGACGTCACTTACATCAACGAAAAGAACA
AGCAGTTCAACCAGAAATTATCAAGATTCTATAATAAGATGCCTGCCGAG
CAGTCTGCGGCCAGCCCTTCTGGCGCCAAGGAAATCTCCAAGCCGTCCGC
AGAGAATGACCAAGCCGGCGATGATCGCAACGAACCTACATCGCCTTCAA
AAGAGAAGACGAAGGGAAAATCAGGTGAAGAGGCTAGCGTGGATGAGGCC
AGTACGGACCAAAAAGACGATGATGCTGCTTCGAGAGCCCGCCAACGACA
AGAAAGGTTCAAGGCTCTCCAGGCTCGCGCA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008943-T1.utr3p1 | KJC3_008943-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008943-T1.utr5p1 | KJC3_008943-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013260 |
| DBxref | PFAM:PF08231 |
| Product | pre-mRNA-splicing factor syf2 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3531022..3532494 - |
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