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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4560498..4565174+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009098-T2 ID=KJC3_009098-T2|Name=KJC3_009098-T2|organism=Aspergillus niger KJC3|type=mRNA|length=4677bp|location=Sequence derived from alignment at ch6:4560498..4565174+ (Aspergillus niger KJC3)
TTTTGTGCAATGTACTCCTGGGGAGATAAGTGCACCTCCTGACGAAATAC
AGCATCGAAATCAATAAATCTGCGCCGCAGGGCGACAGATGCTATAATAC
CTAGGGTCTTCTTTCCGGCACCGACGAACCCCACGAGCAACAGGGTGGCA
TCCGCATCGTATCGCCGACAAGGGATGGAGACAGAGCGGTCGCATGGCAT
CAAAGGAGAGCTGAGACCAGACATTGAGCCTGCCATGACAGAAATGCTCA
GCTTCCAGCATCAAGTCATTGTCGGCTGCTCCAGTTGTGGCAAAGCAAGT
GGACGAACCAGACAAGTCAATGTGAGACCGCCTAAATTCCTTGCCGATCA
CATGACCCAGACTGAAACTCAACTGCACCACCAGAGTATGCGCTTAGAAA
AAGGAGAAAACGTCGGATAAATCCAGTAGCCGCGAATATCGGCATATGAC
ATGCCTGAGTCTAGGTCATCCAAGCGTCAGCGCATCGGTCGCGCCTGTGA
TCAGTGTCGGCGTCGAAAGTCCAAATGCGACGGTGACCAGCCAGTCTGCG
CTATTTGCCGCTCGGCGGGCAGGACCTGCACGTATGAAAACATCAGTCGA
CATCGGGGATTGCAATCAGGATATGTTCGCAGTTTAGAGGTGGCTTTGGG
GCTTTTCCTCGAGCGGTTCCCTCGCGATGAGGATGCCTTGCGACGCTTCC
TGCGCGACCCTCAGTGCAAGAAGCAGCTACCGGCAAGTGACTTGGCGGAG
CGTGGGCGACAATCCAGGCTAGCCAAATACGTGTATCGAGTGCTGAATAG
AGACTCACAGGACGAGTCGAGTAGCGAGCTTGAAGACGATACTGGGCTTG
CACCACGGGGCTGCGACGTTGGTAACCATGGGGAAGAGGAAGGAGAGCGC
ACTGCCCAGGCAAGAAGTGCCCCTGGCGAGCGGATATCTCAGGTTGTCTC
GGTGGAATATCTCAATCAGCCCATCCCAGATAATACCAATCAGCTTCTGC
AGTTCTATTTTACCCATATCCACAGCTGGTTTCCTATCATCGAGCGCCGG
GACGTCCTCCGCGTCATGCACACCCCTCCCGATGCGTCATGGTCGGCTCG
AGACGCTGCCTGTCGTCTCGTGTTGTGGGCAATCGTCGCCTATTCATTGG
CAACGGACGACACACTAGGCCGCGGCAGTCAGGTCGATCCAACACAAGTT
GCTCAATCTATCAGATCGCAAGTCCTGAGGGACATTGACCGGCTGCAGCT
TGGCCATCTTCAATCTCTGTTGATCATCACGCTTCTGTACTTGGGGGTGG
GCCATCTGCGTCTGGCATGGGTACTGGTTGGCGAAGCCACCAGGATGCTC
GAGATGCTTCCGGAATCTGCCAGGTGCGCTCGCTACCTACACATCCGGCA
TGGATGCATCTTGATCGACAATCTTACCTCGGCAATTCTGGAAAAAGCTC
CCTGTGCCTCGCTTGATGACCTGCGACAGTGTGCCTTAGTCAGCGAGGAC
GATGTGGACGAATGGGAGCTGTGGTCTATGCTGCGACCTGACCAGGCTTC
AGGAGGCAGTGTAGTCGCCAAAGGCCCCTTGCGAGCTCTAAGCACCCTCA
ACCTTATCCACGAAGTGATGCGATTCCTTAGTCGGATACTATATTATCCT
TCTGGGACGCTCCCCATCCAGGAGCTTGTAGTGGAGCTACGGAACTTGCA
AGCCCTTGTGACGGCCAGGCGGCCTTATCGCGGTCTTGAATTTGCGAGCC
CTCCTCTCCTTACGTTACATCTAACCACGGCCTTCGTGGTATTTTCTCTC
GCTCTGAAGCACAAGACGTTCGATCCGGCCATCAAGCCGCTGGCCATGAC
CAGCTTGCGTCTTACTCTTGAGATATTGGATGCATATACAGAAATCACTG
GGATGGCGGGCTCGTCCCCGCTGCTTCGCTGCTTTTCCTTCCAGGCCTAC
CGGTGTCTACAGAGTGCTCCGAGCATGTCAGGGCCGGGAATGGAGCAGCT
GAGCAGTCGACTGATCCATCATATGCAGCAGCTGAAGCGAAGCGGCGAGG
GCGGTACTTCTTATGAGGCGCTACGTTTTACCTGGTTGCCCCTAGGGAAT
CACCTTGACTGGTCTTACTTACCAGTGCCACGACTCACTACTCAGCGGCC
TTTGGTGCCTGAAGGCACTGTCTACGGTGGACCTGACTTGAACATGGGGA
ATATGCCAATATCAGACCAAGTAATGGCCATGCCCGGCTTGTCCTCTACT
TCTGGTGGTGTTATGGATGTTGGAAATGAAAGACAGGCGCAGGAGACTGA
AGACTTCGATGCTCTCTTTGAGGAGATGGTAGCATCTATTCCGCAAACTA
GGTATGTTCGATATCCCGGACATCATGTTTTCTTACTAACAATAACAGAA
ACGAGCCCACATTTGCCGAGAATTTGGGTTTCTATGCAGGAAATTTAGAT
ACAGACTTTCTGGCTCAGCTTCAACATGTCCCAGACAATAGTTGATTGCC
AACATAGCTATCTATGAGCGTAATCATAGATCTAACTCCTTGGCCAACTG
TTGCCAGGCCCGGATGCCTCGCTGGGAATGGCTCTGCGGCACGGTCGGAT
CCGGATCCGCCATGGTTCTGGAGAACAGTTCCATCGACACCCATCCTTCG
AATCCAAGCTCCTTCAGGATTACCCGAGCTACCTCGACTACCGGGAGATA
CCCGCCCTTTTCCTGTTCATACAGGAACAATCTCGCGTTGCGGCTCCAGT
TCATGCGTGCCGGCTGGCCGTCGACGTGGAACGGATGGCCGGGGACCAAT
GGCTGCCCCATCTTTTCTGCATCAACAACCTGGACATAAAAGACCTTTTT
CACGTCGATTGTCTTCACAAGGCGATCCAACGACTGGGCTAGCAATGCAT
CAGCATCAGGGACTGTCCCCGAGGGACTGGCGGGATCGGCCCACACCCGA
CCGGCGATGTTGAAGGTATCCAGACAGCATCCAAAATTCGGGCGATCGAC
CCGTAGGATGATTTCCCACATGGTGTCCCATGTCGAGACATATGTTCCCC
AGGCGAGACTCTCGTATGCGAAGCGAACTGGGGGCTCTTGCTGCAGGCCC
AGATCGGCCACCTCGATCATGTCGGAGACAATGAGATCAAGATCTCCTGA
GATGCCATCGGGCTGAAAGTTCGACGGGATCTGGATGATATTGGTACCGA
GAATCTTGATGATCTTGAACCAGGTATGAAGTTTGGCGATCTTTTGTTGG
TGGACGTCTCGATCTAGCAGGCCTTCGTAGAACAGGAACGGCTGCAAGCC
AATCACTTCAAGGCCGTGTCGGTCACAAATATCCTTGGTTTCTCGGGCGG
CAATCAGGAGATTCTCTTCTGTCGGTTCTCCCTTTTCTTTGGCGAGGTAT
TCTAGGTCTTCGTAGAAGATTTCCACCCCTTTGAAGCCGGCCTGGGCGAT
CTGGGAGAGCTTCTCGGGGAGAGAATGGACCCAGGCACGGCCCACGGACA
TGGACGCAATAGCAGGTTTGCAAGGCATGATAGATATAGAAAATGATAGT
ACACTAAATTGATACCTGAAAGTGTAGTAGAACCTTGGATGTGCATTTAT
ATGCTTTCTGTCATACGTCAGGCCCGGCCCACACTGAGATCATCGGCAAT
GTCCTCATCCGATTCCAGTCATTCTCTGCAATCCATCCATTAATTATACT
AGTCTTCTTTTCTAGAAGTTAATACCCGGACTCTCCTCTGCAGCTTTCCG
CAGCACAGACCACGCTCCACCCAGCGACAACTTCTGTCTCTCCTCTTCCC
CGCACCAGAGCCGATACTGCTCCGGCATCTGATGTCCAATAACCTCCGTC
CCCTCCACCGTAGCCCACCCCCGCGGTCCCGCCATCTTCAGAAACCTTGT
CTGTCTCGGCTTGAAGCACATATCAAGCAACACCCCCTTAAAAGGAGCAT
CCAAAAACGCCTCCACGATGCGATGCACCTCCTTCTCCTCCGCCGTCACC
GGCTCCGCATCAGGAACTGTCCCAACCATATACCCCGGCGCCGCCTTCTC
CAACAAACCCGCAACCTGCTCTACCCTCTCAACATGAACCATCTTCAACC
CCTCCCCATACTCCTTCTCCGTTTCCTGCCTCAAAACCCTCACTTCCTCC
TCATCCCGATTCACCACGTAGATAGGCGTACATCCCAGCTCCTCATACAG
CGCATACACCGCCGCACGACATGCTCCCCCCGCGCCCACAATCACCGCGG
CCTTACCCCTCCCTTTCTCCTCCGGATCAGCAGAAAGCAAACACCCCTTG
ATACCGCGCCAGTCGGTGTTCGTTCCGCGCAGCGAGCCATCTTCTGCGCG
ATAGACGTTATTGCACGCTTGGAGGCGCACAGCGTACTCGTCTAGTCCGT
CGAGATGCTCCATGATGGTGCGTTTGTAGGGCATGGTTACCACCCCGCCG
GCGAAGGTGGGCTGGCGGAAGAGAGCCACTGCGTCTTCGACGGTCGGGCA
TTCTTGTGCGATGAAGGTCCACGGGTGGCCCATGCTTTGGAAGGCGTAGG
TATGCATTGGGGGAGCGATGGAGTGGGTTACGCCAATGCCGACAAGGTAG
GCGAAGCGGCGGGGGTCGTCGGTAGTAGAGGACATTGTGCTGCCGTGATT
GGCGTGATTGTGTCTGGTTTGGTTTGG back to topCoding sequence (CDS) from alignment at ch6:4560498..4565174+ >KJC3_009098-T2 ID=KJC3_009098-T2|Name=KJC3_009098-T2|organism=Aspergillus niger KJC3|type=CDS|length=3996bp|location=Sequence derived from alignment at ch6:4560498..4565174+ (Aspergillus niger KJC3)
ATGCCTGAGTCTAGGTCATCCAAGCGTCAGCGCATCGGTCGCGCCTGTGA
TCAGTGTCGGCGTCGAAAGTCCAAATGCGACGGTGACCAGCCAGTCTGCG
CTATTTGCCGCTCGGCGGGCAGGACCTGCACGTATGAAAACATCAGTCGA
CATCGGGGATTGCAATCAGGATATGTTCGCAGTTTAGAGGTGGCTTTGGG
GCTTTTCCTCGAGCGGTTCCCTCGCGATGAGGATGCCTTGCGACGCTTCC
TGCGCGACCCTCAGTGCAAGAAGCAGCTACCGGCAAGTGACTTGGCGGAG
CGTGGGCGACAATCCAGGCTAGCCAAATACGTGTATCGAGTGCTGAATAG
AGACTCACAGGACGAGTCGAGTAGCGAGCTTGAAGACGATACTGGGCTTG
CACCACGGGGCTGCGACGTTGGTAACCATGGGGAAGAGGAAGGAGAGCGC
ACTGCCCAGGCAAGAAGTGCCCCTGGCGAGCGGATATCTCAGGTTGTCTC
GGTGGAATATCTCAATCAGCCCATCCCAGATAATACCAATCAGCTTCTGC
AGTTCTATTTTACCCATATCCACAGCTGGTTTCCTATCATCGAGCGCCGG
GACGTCCTCCGCGTCATGCACACCCCTCCCGATGCGTCATGGTCGGCTCG
AGACGCTGCCTGTCGTCTCGTGTTGTGGGCAATCGTCGCCTATTCATTGG
CAACGGACGACACACTAGGCCGCGGCAGTCAGGTCGATCCAACACAAGTT
GCTCAATCTATCAGATCGCAAGTCCTGAGGGACATTGACCGGCTGCAGCT
TGGCCATCTTCAATCTCTGTTGATCATCACGCTTCTGTACTTGGGGGTGG
GCCATCTGCGTCTGGCATGGGTACTGGTTGGCGAAGCCACCAGGATGCTC
GAGATGCTTCCGGAATCTGCCAGGTGCGCTCGCTACCTACACATCCGGCA
TGGATGCATCTTGATCGACAATCTTACCTCGGCAATTCTGGAAAAAGCTC
CCTGTGCCTCGCTTGATGACCTGCGACAGTGTGCCTTAGTCAGCGAGGAC
GATGTGGACGAATGGGAGCTGTGGTCTATGCTGCGACCTGACCAGGCTTC
AGGAGGCAGTGTAGTCGCCAAAGGCCCCTTGCGAGCTCTAAGCACCCTCA
ACCTTATCCACGAAGTGATGCGATTCCTTAGTCGGATACTATATTATCCT
TCTGGGACGCTCCCCATCCAGGAGCTTGTAGTGGAGCTACGGAACTTGCA
AGCCCTTGTGACGGCCAGGCGGCCTTATCGCGGTCTTGAATTTGCGAGCC
CTCCTCTCCTTACGTTACATCTAACCACGGCCTTCGTGGTATTTTCTCTC
GCTCTGAAGCACAAGACGTTCGATCCGGCCATCAAGCCGCTGGCCATGAC
CAGCTTGCGTCTTACTCTTGAGATATTGGATGCATATACAGAAATCACTG
GGATGGCGGGCTCGTCCCCGCTGCTTCGCTGCTTTTCCTTCCAGGCCTAC
CGGTGTCTACAGAGTGCTCCGAGCATGTCAGGGCCGGGAATGGAGCAGCT
GAGCAGTCGACTGATCCATCATATGCAGCAGCTGAAGCGAAGCGGCGAGG
GCGGTACTTCTTATGAGGCGCTACGTTTTACCTGGTTGCCCCTAGGGAAT
CACCTTGACTGGTCTTACTTACCAGTGCCACGACTCACTACTCAGCGGCC
TTTGGTGCCTGAAGGCACTGTCTACGGTGGACCTGACTTGAACATGGGGA
ATATGCCAATATCAGACCAAGTAATGGCCATGCCCGGCTTGTCCTCTACT
TCTGGTGGTGTTATGGATGTTGGAAATGAAAGACAGGCGCAGGAGACTGA
AGACTTCGATGCTCTCTTTGAGGAGATGGTAGCATCTATTCCGCAAACTA
GAAACGAGCCCACATTTGCCGAGAATTTGGGTTTCTATGCAGGAAATTTA
GATACAGACTTTCTGGCTCAGCTTCAACATGTCCCAGACAATAGTTGAAT
GCCTGAGTCTAGGTCATCCAAGCGTCAGCGCATCGGTCGCGCCTGTGATC
AGTGTCGGCGTCGAAAGTCCAAATGCGACGGTGACCAGCCAGTCTGCGCT
ATTTGCCGCTCGGCGGGCAGGACCTGCACGTATGAAAACATCAGTCGACA
TCGGGGATTGCAATCAGGATATGTTCGCAGTTTAGAGGTGGCTTTGGGGC
TTTTCCTCGAGCGGTTCCCTCGCGATGAGGATGCCTTGCGACGCTTCCTG
CGCGACCCTCAGTGCAAGAAGCAGCTACCGGCAAGTGACTTGGCGGAGCG
TGGGCGACAATCCAGGCTAGCCAAATACGTGTATCGAGTGCTGAATAGAG
ACTCACAGGACGAGTCGAGTAGCGAGCTTGAAGACGATACTGGGCTTGCA
CCACGGGGCTGCGACGTTGGTAACCATGGGGAAGAGGAAGGAGAGCGCAC
TGCCCAGGCAAGAAGTGCCCCTGGCGAGCGGATATCTCAGGTTGTCTCGG
TGGAATATCTCAATCAGCCCATCCCAGATAATACCAATCAGCTTCTGCAG
TTCTATTTTACCCATATCCACAGCTGGTTTCCTATCATCGAGCGCCGGGA
CGTCCTCCGCGTCATGCACACCCCTCCCGATGCGTCATGGTCGGCTCGAG
ACGCTGCCTGTCGTCTCGTGTTGTGGGCAATCGTCGCCTATTCATTGGCA
ACGGACGACACACTAGGCCGCGGCAGTCAGGTCGATCCAACACAAGTTGC
TCAATCTATCAGATCGCAAGTCCTGAGGGACATTGACCGGCTGCAGCTTG
GCCATCTTCAATCTCTGTTGATCATCACGCTTCTGTACTTGGGGGTGGGC
CATCTGCGTCTGGCATGGGTACTGGTTGGCGAAGCCACCAGGATGCTCGA
GATGCTTCCGGAATCTGCCAGGTGCGCTCGCTACCTACACATCCGGCATG
GATGCATCTTGATCGACAATCTTACCTCGGCAATTCTGGAAAAAGCTCCC
TGTGCCTCGCTTGATGACCTGCGACAGTGTGCCTTAGTCAGCGAGGACGA
TGTGGACGAATGGGAGCTGTGGTCTATGCTGCGACCTGACCAGGCTTCAG
GAGGCAGTGTAGTCGCCAAAGGCCCCTTGCGAGCTCTAAGCACCCTCAAC
CTTATCCACGAAGTGATGCGATTCCTTAGTCGGATACTATATTATCCTTC
TGGGACGCTCCCCATCCAGGAGCTTGTAGTGGAGCTACGGAACTTGCAAG
CCCTTGTGACGGCCAGGCGGCCTTATCGCGGTCTTGAATTTGCGAGCCCT
CCTCTCCTTACGTTACATCTAACCACGGCCTTCGTGGTATTTTCTCTCGC
TCTGAAGCACAAGACGTTCGATCCGGCCATCAAGCCGCTGGCCATGACCA
GCTTGCGTCTTACTCTTGAGATATTGGATGCATATACAGAAATCACTGGG
ATGGCGGGCTCGTCCCCGCTGCTTCGCTGCTTTTCCTTCCAGGCCTACCG
GTGTCTACAGAGTGCTCCGAGCATGTCAGGGCCGGGAATGGAGCAGCTGA
GCAGTCGACTGATCCATCATATGCAGCAGCTGAAGCGAAGCGGCGAGGGC
GGTACTTCTTATGAGGCGCTACGTTTTACCTGGTTGCCCCTAGGGAATCA
CCTTGACTGGTCTTACTTACCAGTGCCACGACTCACTACTCAGCGGCCTT
TGGTGCCTGAAGGCACTGTCTACGGTGGACCTGACTTGAACATGGGGAAT
ATGCCAATATCAGACCAAGTAATGGCCATGCCCGGCTTGTCCTCTACTTC
TGGTGGTGTTATGGATGTTGGAAATGAAAGACAGGCGCAGGAGACTGAAG
ACTTCGATGCTCTCTTTGAGGAGATGGTAGCATCTATTCCGCAAACTAGA
AACGAGCCCACATTTGCCGAGAATTTGGGTTTCTATGCAGGAAATTTAGA
TACAGACTTTCTGGCTCAGCTTCAACATGTCCCAGACAATAGTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009098-T2.utr3p1 | KJC3_009098-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4560498..4565174 + |
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