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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4659948..4663483+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009138-T1 ID=KJC3_009138-T1|Name=KJC3_009138-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3536bp|location=Sequence derived from alignment at ch6:4659948..4663483+ (Aspergillus niger KJC3)
TGGCTGTGAGAAGGATAAAGTTTTGCTGATGACGACGATTTCTCATCGTA
TCTGCTACAATGTCTCACGTCTCACCCACCAAACAGGGAGTTGGCGAGGC
CGATCTCCGAGGAGCAGGTTACTAGGGTCACTTACACAGCTGGGGTGCCC
ATGCAGATGCGGATGTAGCTGCAGGAACCTAGTCTCCTATCTTGACTCGA
TGGTACGATACTAGCCACTAGATCGTCGCATTCAACATCAATTGAAGTCT
GTGCTGACTTCGGCTGCACCGGACGGTCCGCAAGTTGTGTGGTGGATTTT
GCTGGCAACAGCGGGAGCAAATATACTACTATCAATTTGGGTACTGGTCT
TGGCAACGTGCCAGCTGTGCGACCACTGGCATTTGATTTCGCAATGAAGC
GACCTCATAGCGACCACCCCAAAAACCAGAGTACTAGAGGTACTGCTAGT
TCAATTCTCCTGTGCAACGATTAGGTACACCCCACCGCGGCCTATTAGTG
ACAAACCAGAGTTTGCCACCAGGGCTGTGAACCCTGGAGAGCTCTCCATG
TGTGGCCCGGCTTTGGATTAGGGCCCTTTCTTAGCGCGTGCGGAGGCGTC
TTCCAGCCCCGACGGTTTCCCCGCGATGGATCGCTTCTGCTCTGCCCGGC
CTGTTTTGCGCTCTGCCACTCGGCTCCCTTCTTCCTCCATGGAAAAAGTT
CCCTCTTCTGTTCGACGGGTTCCTATCCGAGTTGCGTCTTGTTCACGGCG
CAAACAAGAAGGCTTAACGGTCATCGTGGGTACGTATCTCAAGTCAGTCA
CTCATCAGCAACTACTACCTCGGTCTCTTTCTCCCCGCTTGTAATTGCCT
CGTAAGGACTAAAGACCGGTTTTTTTGCTCCTTTCGTCTTGGCCGATTGC
TGACGTCTCCAAACCGTTTCATCAGACTGCGATTCCGTTCTCTCTCTCCT
CTGATACTCCTGAAATCGCCAATGTCGGCCTGAAATGGATTCTGCCCAGT
CGGGGGACGCCCAGGCACCCAACGTTCCAGCTGCCACCGAAGAACCAACC
GGCGAAGCCACAACAAAACGTCGCTGGAGAAGGAATCGGATAGCCTGCGA
CTCCTGCCATTCGCGTCGCGTGCGGTGCGATCGAGCCTTCCCCTGCTCGC
GCTGTCTTCGCAGTGATATCCGGTGTGAATTCACTCGCGAACGACGAAAG
AGAGGACGCATTGCGCGATCCCGACTGGTAGAGACCAAGACTGCTGTAGA
GAAGGCGAGCCAGCCTGTGGAGACTCGAGATTCAGCACCGGCACCTGCAG
AAGCAGGGTCTGGCCCAGTTCCAAATGGCTCTCCTTCCTCAACATTTCAC
CATAGATCGCCGGCGACAAATGATGTGACGGGGTCGGCCCCAAGTATCGA
CGAGCGGCGCTCTCAAGCGGATGTATCACTTCCTCCCAGAAAGTCAGGGC
ACACTGTTAATGCGACAGAGGAATGGCTAGCAGGCACGCATGTCTCTCCA
GGATCCTATGAGCCCTTGGCAGGCATCGGCCCCGGAGAAGGCCCTTTCCC
TCGAATCTTTGATATCTGGAATGGGGTCGACTTGGCCGGTTATAGCGACC
CAGCATCTCAAGGCTCCAAGATAACAGGCCTTGGTCAGACACCAGCACCA
TCTGCAACGATCCTAAAGTATCCGGTCCTCCAGCCAGTAATGCCCTATCT
GGAATCGAGCTTGCCTCGAAAGCTAGTATACGACCTTCTCGACCTGTACT
TTACAAGCGCGTTTTCCACACATATGCATCCTGTGTGCCATCACATTCAT
TGCTATGTCCTACGAAAGGCGTCTTTTCTAAGCCGAGAGGCTCCTCGACC
TAGCAGCCCGGCACTTCTGGCCAGTATGCTTTGGGTGGCAGCGTTAGATG
ATCGTGCGTTTGCTTTGCCGATATCTCCACCCCAGAGAAAGAAAATATGT
CAGTTCTTGTGTGCTCTAACATTACGACTTTTGCGACCGTTGATTCACGT
GTCATTCAAAGAGCAAGAAGGCGCCGCCGCGAGTGACCCACTTCATGCTG
CGGTCGGTCAGGATGGCCCTCCTACAACCGTGCACCACCCGTTTGAGGTC
GGTGGTGATGATCGGGGGTTAGTTGGCCCTGCAGGATCATTGGACGATGT
TATCACATACATCCATGTGGCATCCATCATCTCCTCAAGCGAGCAAAAGG
CCGCCAGCATGCGATGGTTCGTTTTTGTTCAAGTAACTTGAAGCGAGCAC
GGAAGCTAACCAATCTTAGGTGGCATGCCGCCTTTACTCTTGCACGAGAA
TTGAAGCTGAATCAGGAGATCGAGGTGATGCCCAGTGAGGAGAATCACCC
AGAGGGTTCGAGCCCGTCATTTGATTATTCACTTGCGGGATGGAGTGGCG
TGGACACGGGCCCCTTTTTTGATTATTCAAACCCTGCCCGGCCAAGCTTG
AATTGCGTATGCGACCGTGGCCACGAACTGCGTGGCGCTATCACCGAAGA
GCATCGTGAAGAGCGTCGTCGGACATGGTGGCTCCTCTACATTATGGACC
GTCACCTCGCTCTCTGCTACAATCGCCCCCTTGCTCTACTCGATGCTGAA
AGCGAGGATCTCTTATTGCCTCTGGACGAAGGGTCATGGCAGTCAGGTAA
TATCCACAGCAATAGTCCCAAACCGGACGGACCACAGTGCCCACTGTCAG
GCGAGAAGAACAAGCGCCGCGTTTTCCCTAATTTCATCTGCCATGATCAT
TCTATCTTCGGCTTCTTTCTCCCTCTGATGACCATTACTGGTGAATTAAT
CGACCTGAACCAAGCTCGGAACCATCCAATGCTTGGAGCACGCTTGAACG
GAAAGGACCCCTGGGATGCGCACGTTGGTGAAGTACTACGCCAGCTTGAG
CTTTACAAGGCTAGTCTCACTACGTTTGCAGCCACTGCGTCGGATCCCGA
TGCGCCCTTGTCCAGTGCCTTCCCCCCTAAACCCGATCAACAACCAGTTG
AACCCTCACTCGCCCAGGCTTATTCATGGCATACTCAAACGGTCATCTCG
TATGCATCCTACCTCGTGCATGTGCTGCATATTCTTCTTGTTGGCAAATG
GGATCCTGTGTCGTTGATCGAGGATAAGGACTTCTGGACTTCATCGCCTG
CATTCGCCTCCACCATCTCTCACGCTCTTGATGCGGCAGACTCAGTGGAC
CATATCTTACGCTACGACCCCGATATTAGTTTTATGCCGTATTTCTTCGG
CATTCAATTGCTCCAAGGCAGCTTTCTTCTCCTGCTGATTGTGGAGCGGC
TGCAGAAAGAAGCGGGGGAGGGTATTCTAAATGCCTGCGAGGTGATGATT
CGAGCGACCGAGTCCTGCGTGGTGACGTTGAACACTGAATATCAACGGAA
CTTCCGACAGGTCATGCGGAGCGCCGTTGCGCAGGCGCGTGGGCGCCCTG
TCAATCACAGTGAGATCCGGCATCGTCGCAAGGCCGTCTTAGCACTTTAC
CGGTGGACCCGGAAGGGCACTGGGTTGGCTCTTTAG back to topCoding sequence (CDS) from alignment at ch6:4659948..4663483+ >KJC3_009138-T1 ID=KJC3_009138-T1|Name=KJC3_009138-T1|organism=Aspergillus niger KJC3|type=CDS|length=4998bp|location=Sequence derived from alignment at ch6:4659948..4663483+ (Aspergillus niger KJC3)
ATGGATTCTGCCCAGTCGGGGGACGCCCAGGCACCCAACGTTCCAGCTGC
CACCGAAGAACCAACCGGCGAAGCCACAACAAAACGTCGCTGGAGAAGGA
ATCGGATAGCCTGCGACTCCTGCCATTCGCGTCGCGTGCGGTGCGATCGA
GCCTTCCCCTGCTCGCGCTGTCTTCGCAGTGATATCCGGTGTGAATTCAC
TCGCGAACGACGAAAGAGAGGACGCATTGCGCGATCCCGACTGGTAGAGA
CCAAGACTGCTGTAGAGAAGGCGAGCCAGCCTGTGGAGACTCGAGATTCA
GCACCGGCACCTGCAGAAGCAGGGTCTGGCCCAGTTCCAAATGGCTCTCC
TTCCTCAACATTTCACCATAGATCGCCGGCGACAAATGATGTGACGGGGT
CGGCCCCAAGTATCGACGAGCGGCGCTCTCAAGCGGATGTATCACTTCCT
CCCAGAAAGTCAGGGCACACTGTTAATGCGACAGAGGAATGGCTAGCAGG
CACGCATGTCTCTCCAGGATCCTATGAGCCCTTGGCAGGCATCGGCCCCG
GAGAAGGCCCTTTCCCTCGAATCTTTGATATCTGGAATGGGGTCGACTTG
GCCGGTTATAGCGACCCAGCATCTCAAGGCTCCAAGATAACAGGCCTTGG
TCAGACACCAGCACCATCTGCAACGATCCTAAAGTATCCGGTCCTCCAGC
CAGTAATGCCCTATCTGGAATCGAGCTTGCCTCGAAAGCTAGTATACGAC
CTTCTCGACCTGTACTTTACAAGCGCGTTTTCCACACATATGCATCCTGT
GTGCCATCACATTCATTGCTATGTCCTACGAAAGGCGTCTTTTCTAAGCC
GAGAGGCTCCTCGACCTAGCAGCCCGGCACTTCTGGCCAGTATGCTTTGG
GTGGCAGCGTTAGATGATCGTGCGTTTGCTTTGCCGATATCTCCACCCCA
GAGAAAGAAAATATGTCAGTTCTTGTGTGCTCTAACATTACGACTTTTGC
GACCGTTGATTCACGTGTCATTCAAAGAGCAAGAAGGCGCCGCCGCGAGT
GACCCACTTCATGCTGCGGTCGGTCAGGATGGCCCTCCTACAACCGTGCA
CCACCCGTTTGAGGTCGGTGGTGATGATCGGGGGTTAGTTGGCCCTGCAG
GATCATTGGACGATGTTATCACATACATCCATGTGGCATCCATCATCTCC
TCAAGCGAGCAAAAGGCCGCCAGCATGCGATGGTGGCATGCCGCCTTTAC
TCTTGCACGAGAATTGAAGCTGAATCAGGAGATCGAGGTGATGCCCAGTG
AGGAGAATCACCCAGAGGGTTCGAGCCCGTCATTTGATTATTCACTTGCG
GGATGGAGTGGCGTGGACACGGGCCCCTTTTTTGATTATTCAAACCCTGC
CCGGCCAAGCTTGAATTGCGTATGCGACCGTGGCCACGAACTGCGTGGCG
CTATCACCGAAGAGCATCGTGAAGAGCGTCGTCGGACATGGTGGCTCCTC
TACATTATGGACCGTCACCTCGCTCTCTGCTACAATCGCCCCCTTGCTCT
ACTCGATGCTGAAAGCGAGGATCTCTTATTGCCTCTGGACGAAGGGTCAT
GGCAGTCAGGTAATATCCACAGCAATAGTCCCAAACCGGACGGACCACAG
TGCCCACTGTCAGGCGAGAAGAACAAGCGCCGCGTTTTCCCTAATTTCAT
CTGCCATGATCATTCTATCTTCGGCTTCTTTCTCCCTCTGATGACCATTA
CTGGTGAATTAATCGACCTGAACCAAGCTCGGAACCATCCAATGCTTGGA
GCACGCTTGAACGGAAAGGACCCCTGGGATGCGCACGTTGGTGAAGTACT
ACGCCAGCTTGAGCTTTACAAGGCTAGTCTCACTACGTTTGCAGCCACTG
CGTCGGATCCCGATGCGCCCTTGTCCAGTGCCTTCCCCCCTAAACCCGAT
CAACAACCAGTTGAACCCTCACTCGCCCAGGCTTATTCATGGCATACTCA
AACGGTCATCTCGTATGCATCCTACCTCGTGCATGTGCTGCATATTCTTC
TTGTTGGCAAATGGGATCCTGTGTCGTTGATCGAGGATAAGGACTTCTGG
ACTTCATCGCCTGCATTCGCCTCCACCATCTCTCACGCTCTTGATGCGGC
AGACTCAGTGGACCATATCTTACGCTACGACCCCGATATTAGTTTTATGC
CGTATTTCTTCGGCATTCAATTGCTCCAAGGCAGCTTTCTTCTCCTGCTG
ATTGTGGAGCGGCTGCAGAAAGAAGCGGGGGAGGGTATTCTAAATGCCTG
CGAGGTGATGATTCGAGCGACCGAGTCCTGCGTGGTGACGTTGAACACTG
AATATCAACGGAACTTCCGACAGGTCATGCGGAGCGCCGTTGCGCAGGCG
CGTGGGCGCCCTGTCAATCACAGTGAGATCCGGCATCGTCGCAAGGCCGT
CTTAGCACTTTACCGGTGGACCCGGAAGGGCACTGGGTTGGCTCTTTAGA
TGGATTCTGCCCAGTCGGGGGACGCCCAGGCACCCAACGTTCCAGCTGCC
ACCGAAGAACCAACCGGCGAAGCCACAACAAAACGTCGCTGGAGAAGGAA
TCGGATAGCCTGCGACTCCTGCCATTCGCGTCGCGTGCGGTGCGATCGAG
CCTTCCCCTGCTCGCGCTGTCTTCGCAGTGATATCCGGTGTGAATTCACT
CGCGAACGACGAAAGAGAGGACGCATTGCGCGATCCCGACTGGTAGAGAC
CAAGACTGCTGTAGAGAAGGCGAGCCAGCCTGTGGAGACTCGAGATTCAG
CACCGGCACCTGCAGAAGCAGGGTCTGGCCCAGTTCCAAATGGCTCTCCT
TCCTCAACATTTCACCATAGATCGCCGGCGACAAATGATGTGACGGGGTC
GGCCCCAAGTATCGACGAGCGGCGCTCTCAAGCGGATGTATCACTTCCTC
CCAGAAAGTCAGGGCACACTGTTAATGCGACAGAGGAATGGCTAGCAGGC
ACGCATGTCTCTCCAGGATCCTATGAGCCCTTGGCAGGCATCGGCCCCGG
AGAAGGCCCTTTCCCTCGAATCTTTGATATCTGGAATGGGGTCGACTTGG
CCGGTTATAGCGACCCAGCATCTCAAGGCTCCAAGATAACAGGCCTTGGT
CAGACACCAGCACCATCTGCAACGATCCTAAAGTATCCGGTCCTCCAGCC
AGTAATGCCCTATCTGGAATCGAGCTTGCCTCGAAAGCTAGTATACGACC
TTCTCGACCTGTACTTTACAAGCGCGTTTTCCACACATATGCATCCTGTG
TGCCATCACATTCATTGCTATGTCCTACGAAAGGCGTCTTTTCTAAGCCG
AGAGGCTCCTCGACCTAGCAGCCCGGCACTTCTGGCCAGTATGCTTTGGG
TGGCAGCGTTAGATGATCGTGCGTTTGCTTTGCCGATATCTCCACCCCAG
AGAAAGAAAATATGTCAGTTCTTGTGTGCTCTAACATTACGACTTTTGCG
ACCGTTGATTCACGTGTCATTCAAAGAGCAAGAAGGCGCCGCCGCGAGTG
ACCCACTTCATGCTGCGGTCGGTCAGGATGGCCCTCCTACAACCGTGCAC
CACCCGTTTGAGGTCGGTGGTGATGATCGGGGGTTAGTTGGCCCTGCAGG
ATCATTGGACGATGTTATCACATACATCCATGTGGCATCCATCATCTCCT
CAAGCGAGCAAAAGGCCGCCAGCATGCGATGGTGGCATGCCGCCTTTACT
CTTGCACGAGAATTGAAGCTGAATCAGGAGATCGAGGTGATGCCCAGTGA
GGAGAATCACCCAGAGGGTTCGAGCCCGTCATTTGATTATTCACTTGCGG
GATGGAGTGGCGTGGACACGGGCCCCTTTTTTGATTATTCAAACCCTGCC
CGGCCAAGCTTGAATTGCGTATGCGACCGTGGCCACGAACTGCGTGGCGC
TATCACCGAAGAGCATCGTGAAGAGCGTCGTCGGACATGGTGGCTCCTCT
ACATTATGGACCGTCACCTCGCTCTCTGCTACAATCGCCCCCTTGCTCTA
CTCGATGCTGAAAGCGAGGATCTCTTATTGCCTCTGGACGAAGGGTCATG
GCAGTCAGGTAATATCCACAGCAATAGTCCCAAACCGGACGGACCACAGT
GCCCACTGTCAGGCGAGAAGAACAAGCGCCGCGTTTTCCCTAATTTCATC
TGCCATGATCATTCTATCTTCGGCTTCTTTCTCCCTCTGATGACCATTAC
TGGTGAATTAATCGACCTGAACCAAGCTCGGAACCATCCAATGCTTGGAG
CACGCTTGAACGGAAAGGACCCCTGGGATGCGCACGTTGGTGAAGTACTA
CGCCAGCTTGAGCTTTACAAGGCTAGTCTCACTACGTTTGCAGCCACTGC
GTCGGATCCCGATGCGCCCTTGTCCAGTGCCTTCCCCCCTAAACCCGATC
AACAACCAGTTGAACCCTCACTCGCCCAGGCTTATTCATGGCATACTCAA
ACGGTCATCTCGTATGCATCCTACCTCGTGCATGTGCTGCATATTCTTCT
TGTTGGCAAATGGGATCCTGTGTCGTTGATCGAGGATAAGGACTTCTGGA
CTTCATCGCCTGCATTCGCCTCCACCATCTCTCACGCTCTTGATGCGGCA
GACTCAGTGGACCATATCTTACGCTACGACCCCGATATTAGTTTTATGCC
GTATTTCTTCGGCATTCAATTGCTCCAAGGCAGCTTTCTTCTCCTGCTGA
TTGTGGAGCGGCTGCAGAAAGAAGCGGGGGAGGGTATTCTAAATGCCTGC
GAGGTGATGATTCGAGCGACCGAGTCCTGCGTGGTGACGTTGAACACTGA
ATATCAACGGAACTTCCGACAGGTCATGCGGAGCGCCGTTGCGCAGGCGC
GTGGGCGCCCTGTCAATCACAGTGAGATCCGGCATCGTCGCAAGGCCGTC
TTAGCACTTTACCGGTGGACCCGGAAGGGCACTGGGTTGGCTCTTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4659948..4663483 + |
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