You are here

Home

KJC3_009155-T1, KJC3_009155-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009155-T1
Unique NameKJC3_009155-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:4700948..4702953+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009155-T1 ID=KJC3_009155-T1|Name=KJC3_009155-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2006bp|location=Sequence derived from alignment at ch6:4700948..4702953+ (Aspergillus niger KJC3)
AATTTCGCTTCATCCTTCAGCGAGCAGGAGTCGCCGGCTCTTCTAACATC
CCTTTCATTACCTTCTTGTTTATTTGGTGTCAGGCCTCATCCCTGCTTCC
AACATGTCGATGGACCTGGATGCGCCGGTGCCTTTCGAGGCCATCCCGCA
AGATCAGATCGCTGCGACGTGAGTTACCCCGCAAATTAAAAGAAAATTTC
TCTATAAACATACACGAGGGGCAGTATGATCGAGGACTTCAACTAACAAA
TGTGCTTAATAGTATCCTTTGTTGCAACTGTGGCGCGCCCATCGATGGAA
CAACATCCGCAGGCGCCCTTTGCCAGGACTGTGTGAAATTGACGGTTGAT
ATCTCCCAGGGCATCCAGAGAGAGGCAGTTCTCCACTGCTGCAAGGACTG
CGAGCGGTGGCTTCAACCTCCCACCAGCTGGGTTAGTGCTGCGCTCGAAT
CGAAGGAACTCCTCGCACACTGCTTGCGCAAGCTCCGCGGCTTGTCCAAG
GTTCGCATTATCGATGCCAGCTTCATCTGGACCGAACCCCACTCGAAGCG
TATTAAGGTCAAGATCACCATCCAGCAGGAGGCATTCCAGGGCACCATTG
TGCAGCAGACTTTCGAGGTTGAATACGTTGTCGCCTCGCTACAATGCCCT
GACTGCAAGAAGTCGTTCACTGTCAACACTTGGAACTCCAGCATTCAGCT
GCGCCAGAAGGTGCCTCACAAGCGAACCTTCTTGTACCTTGAGCAAATCA
TCCTCAAGCACAACGCTCACCGCGATACAATCAACATCAAGGAGGCCAAG
GACGGTTTGGATTTCTACTTTGCGCAGAGGAATCATGCGGAGAAGATGGT
CGAGTTCCTCTCCTCCGTCGTCCCCACCAAGGTCAAGAAGTCGCAGGAGC
TTATCTCCATGGATATTCACACCTCCACGAAGTCATACAAGTTCACCTTC
TCGATTGAATTGATCCCTATCTGCAAGGATGATTTGGTTGCGCTGCCCAT
CAAACTTGCCAGATCACTGGGCAACATCTCGCCCCTGGCCCTCTGCCACC
GCGTCGGTACCTCTGTCAACCTTCTCGACCCCAACACGCTCCAGACCGCC
GATGTCCCGACAAACACCTACTGGAGATCACCCTTCAGGAGTCTTGCCGA
TGTGACGGAGCTGACCGAGTTCATCATCATGGATATTGAGCTGGTTGGAC
GGTCGAACGGACGGTTCTATCTGGCCGAGGCAACTGTTGCCCGTGCCTCG
GATCTTGGCTCGAACGATCAAACCTATTTCACCCGCACCCACCTGGGTGG
AGTACTCCACGTCGGTGACTCTGTTCTCGGTTACCACCTGACTGGTACCA
ATTTTAACGACCCCAACTTCGAGGCGATCGAGGCTAGTGGCCAGTACAGC
TCCGCGATTCCCGACGTTGTGCTCGTGAAGAAGTTCTATGCCCGCAAGAA
GAAGAACAAGAACCGCAACTGGCGTCTTAAGCGCATGGCTCTTGAGTACG
AGGAGGAGGCGGCCCAGCAAGCTGCTGGCAACCTCAACCGTAAGCAGGAA
GCCGAGCGCAACCGCCTTGAAGAGGACTTTGAGATGTTCTTGCGCGATGT
TGAAGAGGATCAGGAATTGCGTGGCACTCTTGATCTGTACAAGGCACGGA
ACCGTGCCCCCGTGGAGCACGGTGGTATGGATATGGATGAGGATAGCGAA
GATGATGAGGTGCCCAAGATCAACATGGATGAGCTGCTTGATGACTTTGA
CGAGTTGAACATGGACGATGACCATTAAGTTCCACGGGACTTTTTTTAAT
CACGACTGCACATAGGGGTTTCTGGCGTTTTCATGGCTATTCTGATATCG
TTATGGTTAACAATATCCGGTCTGATACACAAAAAGTTGGGTATATAGAT
GAAGTGAATGATTAGACATTGATTAGGAGTGAAGTCTGAGTTGTAATCCC
TCATTCCGAAGTATACCTTCACATCCAACATGATCATCGTGAACATCGTA
TCTGCC
back to top

Coding sequence (CDS) from alignment at ch6:4700948..4702953+

>KJC3_009155-T1 ID=KJC3_009155-T1|Name=KJC3_009155-T1|organism=Aspergillus niger KJC3|type=CDS|length=3162bp|location=Sequence derived from alignment at ch6:4700948..4702953+ (Aspergillus niger KJC3)
ATGTCGATGGACCTGGATGCGCCGGTGCCTTTCGAGGCCATCCCGCAAGA
TCAGATCGCTGCGACTATCCTTTGTTGCAACTGTGGCGCGCCCATCGATG
GAACAACATCCGCAGGCGCCCTTTGCCAGGACTGTGTGAAATTGACGGTT
GATATCTCCCAGGGCATCCAGAGAGAGGCAGTTCTCCACTGCTGCAAGGA
CTGCGAGCGGTGGCTTCAACCTCCCACCAGCTGGGTTAGTGCTGCGCTCG
AATCGAAGGAACTCCTCGCACACTGCTTGCGCAAGCTCCGCGGCTTGTCC
AAGGTTCGCATTATCGATGCCAGCTTCATCTGGACCGAACCCCACTCGAA
GCGTATTAAGGTCAAGATCACCATCCAGCAGGAGGCATTCCAGGGCACCA
TTGTGCAGCAGACTTTCGAGGTTGAATACGTTGTCGCCTCGCTACAATGC
CCTGACTGCAAGAAGTCGTTCACTGTCAACACTTGGAACTCCAGCATTCA
GCTGCGCCAGAAGGTGCCTCACAAGCGAACCTTCTTGTACCTTGAGCAAA
TCATCCTCAAGCACAACGCTCACCGCGATACAATCAACATCAAGGAGGCC
AAGGACGGTTTGGATTTCTACTTTGCGCAGAGGAATCATGCGGAGAAGAT
GGTCGAGTTCCTCTCCTCCGTCGTCCCCACCAAGGTCAAGAAGTCGCAGG
AGCTTATCTCCATGGATATTCACACCTCCACGAAGTCATACAAGTTCACC
TTCTCGATTGAATTGATCCCTATCTGCAAGGATGATTTGGTTGCGCTGCC
CATCAAACTTGCCAGATCACTGGGCAACATCTCGCCCCTGGCCCTCTGCC
ACCGCGTCGGTACCTCTGTCAACCTTCTCGACCCCAACACGCTCCAGACC
GCCGATGTCCCGACAAACACCTACTGGAGATCACCCTTCAGGAGTCTTGC
CGATGTGACGGAGCTGACCGAGTTCATCATCATGGATATTGAGCTGGTTG
GACGGTCGAACGGACGGTTCTATCTGGCCGAGGCAACTGTTGCCCGTGCC
TCGGATCTTGGCTCGAACGATCAAACCTATTTCACCCGCACCCACCTGGG
TGGAGTACTCCACGTCGGTGACTCTGTTCTCGGTTACCACCTGACTGGTA
CCAATTTTAACGACCCCAACTTCGAGGCGATCGAGGCTAGTGGCCAGTAC
AGCTCCGCGATTCCCGACGTTGTGCTCGTGAAGAAGTTCTATGCCCGCAA
GAAGAAGAACAAGAACCGCAACTGGCGTCTTAAGCGCATGGCTCTTGAGT
ACGAGGAGGAGGCGGCCCAGCAAGCTGCTGGCAACCTCAACCGTAAGCAG
GAAGCCGAGCGCAACCGCCTTGAAGAGGACTTTGAGATGTTCTTGCGCGA
TGTTGAAGAGGATCAGGAATTGCGTGGCACTCTTGATCTGTACAAGGCAC
GGAACCGTGCCCCCGTGGAGCACGGTGGTATGGATATGGATGAGGATAGC
GAAGATGATGAGGTGCCCAAGATCAACATGGATGAGCTGCTTGATGACTT
TGACGAGTTGAACATGGACGATGACCATTAAATGTCGATGGACCTGGATG
CGCCGGTGCCTTTCGAGGCCATCCCGCAAGATCAGATCGCTGCGACTATC
CTTTGTTGCAACTGTGGCGCGCCCATCGATGGAACAACATCCGCAGGCGC
CCTTTGCCAGGACTGTGTGAAATTGACGGTTGATATCTCCCAGGGCATCC
AGAGAGAGGCAGTTCTCCACTGCTGCAAGGACTGCGAGCGGTGGCTTCAA
CCTCCCACCAGCTGGGTTAGTGCTGCGCTCGAATCGAAGGAACTCCTCGC
ACACTGCTTGCGCAAGCTCCGCGGCTTGTCCAAGGTTCGCATTATCGATG
CCAGCTTCATCTGGACCGAACCCCACTCGAAGCGTATTAAGGTCAAGATC
ACCATCCAGCAGGAGGCATTCCAGGGCACCATTGTGCAGCAGACTTTCGA
GGTTGAATACGTTGTCGCCTCGCTACAATGCCCTGACTGCAAGAAGTCGT
TCACTGTCAACACTTGGAACTCCAGCATTCAGCTGCGCCAGAAGGTGCCT
CACAAGCGAACCTTCTTGTACCTTGAGCAAATCATCCTCAAGCACAACGC
TCACCGCGATACAATCAACATCAAGGAGGCCAAGGACGGTTTGGATTTCT
ACTTTGCGCAGAGGAATCATGCGGAGAAGATGGTCGAGTTCCTCTCCTCC
GTCGTCCCCACCAAGGTCAAGAAGTCGCAGGAGCTTATCTCCATGGATAT
TCACACCTCCACGAAGTCATACAAGTTCACCTTCTCGATTGAATTGATCC
CTATCTGCAAGGATGATTTGGTTGCGCTGCCCATCAAACTTGCCAGATCA
CTGGGCAACATCTCGCCCCTGGCCCTCTGCCACCGCGTCGGTACCTCTGT
CAACCTTCTCGACCCCAACACGCTCCAGACCGCCGATGTCCCGACAAACA
CCTACTGGAGATCACCCTTCAGGAGTCTTGCCGATGTGACGGAGCTGACC
GAGTTCATCATCATGGATATTGAGCTGGTTGGACGGTCGAACGGACGGTT
CTATCTGGCCGAGGCAACTGTTGCCCGTGCCTCGGATCTTGGCTCGAACG
ATCAAACCTATTTCACCCGCACCCACCTGGGTGGAGTACTCCACGTCGGT
GACTCTGTTCTCGGTTACCACCTGACTGGTACCAATTTTAACGACCCCAA
CTTCGAGGCGATCGAGGCTAGTGGCCAGTACAGCTCCGCGATTCCCGACG
TTGTGCTCGTGAAGAAGTTCTATGCCCGCAAGAAGAAGAACAAGAACCGC
AACTGGCGTCTTAAGCGCATGGCTCTTGAGTACGAGGAGGAGGCGGCCCA
GCAAGCTGCTGGCAACCTCAACCGTAAGCAGGAAGCCGAGCGCAACCGCC
TTGAAGAGGACTTTGAGATGTTCTTGCGCGATGTTGAAGAGGATCAGGAA
TTGCGTGGCACTCTTGATCTGTACAAGGCACGGAACCGTGCCCCCGTGGA
GCACGGTGGTATGGATATGGATGAGGATAGCGAAGATGATGAGGTGCCCA
AGATCAACATGGATGAGCTGCTTGATGACTTTGACGAGTTGAACATGGAC
GATGACCATTAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NMD3KJC3_009155Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009155-T1.utr5p1KJC3_009155-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009155-T1.exon1KJC3_009155-T1.exon1Aspergillus niger KJC3exon
KJC3_009155-T1.exon2KJC3_009155-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009155-T1.cdsKJC3_009155-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009155-T1.utr3p1KJC3_009155-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009155-T1KJC3_009155-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262CA4
DBxrefInterPro:IPR007064
DBxrefPFAM:PF04981
Productribosome-binding protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:4700948..4702953 +
Powered by Drupal