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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4769422..4770955+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009178-T1 ID=KJC3_009178-T1|Name=KJC3_009178-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1534bp|location=Sequence derived from alignment at ch6:4769422..4770955+ (Aspergillus niger KJC3)
CATTCCACCACGCGACAATGTTGGTATGTACAATTCTGGATTATCTTTCT
CATTTTGGAGAATAGAGATCGCTTTCCTAACGTTGAAGCCAAGACATGAA
AATTTCCTATTTTCGACAACCAGTCCATATGAGCTGAACACCTAGCGAAA
AAAGATATGTCTATACCCAACCATGACCCCACATCCACCAGGGGCATAAC
ACAAACCTTCAAAACCATCGCCCTCTTCATCCTCCACCAATGGCTCCTCA
TCGGCATCGGAGTCGCCTGCGTCTTGGCCTACTATTTCCCCAACGTCGCC
AAGAGCGGCGGCATCATCCGCTCCGAATATAGCATTCTCTACGGCGCAAT
GGCCCTCATTTTCTTGATCTCGGGTCTCAGCGTGCCTCGAGAAAAGCTCA
TTATTCACCTCCTCAACTGGCGACTGCATGTTCTTGTCCAGGGTCTATCG
TTCCTCGTCATACCGGCCTTTATCCTCGCTATCGTGCATATCATCTTAGC
CGGTGATCCAGACGAACATATTGATCGCGCCTTGCTGGCCGGGTATATCT
TCCTGGCCTGTATTCCTACCACTATCGCTTCGAATGTCGTCATGACTCGC
TCGGCGGGCGGTGACGATGCCGCCGCGCTGGTGGAAGTCATTATTGCGAA
TTTCCTGGGCCCGTTCATCACCGCTGGGTGGACGGTTACTTTGCTTCCAA
AGTCGTCGGAGTTTGATGTCTGGAGGTCGGGGGATGGGGATCTCTCTGAT
ATGTACCGCGATGTGTTTAAGCAGTTGGGTCTGGCGGTCTTGTTGCCGTT
GGTGGTGGGTCAGTTGATACGCTGGGTTTGGCCGGACATCGTGGGCAAAG
TGTTGGCTAAGTATCGCATTGCGAAGATAAGCACCGCGTGCTTGATTCTG
TTGGTTTGGTGAGTTGTTTGACTTGGACCCGTATACTTGTTGAGACAGCA
AAACTTACATGAATGGGTATAGGTCAACCTTCTCTTCTTGCTTCGCGACA
GGAGCGCTCCAGACTCTTTCCGCTTCTAGTATTGTCTTCGTGGTTCTGTT
CAATATTGCGCTGTATATGTTCCTTACGGCTGTTTGCTTCTATTGTTCTC
GCCCGCCGAGGATCATCTCTGGTGTGTCGTTTACGGTGAAAGGGAAGACA
TTTTATCCCTTCCAGCAGATGAATCCTCAGGAGACTATTGCCGTCTGTTT
CTGTGGTCCGGCGAAGAGTACTGCACTGGGCATTCCGCTGCTTTATGCCA
TGTGGGGTCCGTTGAGTCTGTATATCAAGTCGAAGACGTCGGTGCCTGTG
CTGCTGTATACCACGGAGCAGATTTGTGTGGCGCATTTCTTTGTGCATAT
GTTCAAGTGGTGGCATCGGCGGGTTGAGAGGAAGAGTGCCAGCGTAAGTG
ATGTGGAGTGTGATGGAGAGGGAAATGCAAATGAAAATGAGGAGAAGTTG
GACGGTTCAGGGTCTGATGGGAGGAATCTGGATAATCAGAGCAAAGGGGC
AGATGTGAGTCTGTCCCAGGAGCATAATAATTAA back to topCoding sequence (CDS) from alignment at ch6:4769422..4770955+ >KJC3_009178-T1 ID=KJC3_009178-T1|Name=KJC3_009178-T1|organism=Aspergillus niger KJC3|type=CDS|length=2628bp|location=Sequence derived from alignment at ch6:4769422..4770955+ (Aspergillus niger KJC3)
ATGTCTATACCCAACCATGACCCCACATCCACCAGGGGCATAACACAAAC
CTTCAAAACCATCGCCCTCTTCATCCTCCACCAATGGCTCCTCATCGGCA
TCGGAGTCGCCTGCGTCTTGGCCTACTATTTCCCCAACGTCGCCAAGAGC
GGCGGCATCATCCGCTCCGAATATAGCATTCTCTACGGCGCAATGGCCCT
CATTTTCTTGATCTCGGGTCTCAGCGTGCCTCGAGAAAAGCTCATTATTC
ACCTCCTCAACTGGCGACTGCATGTTCTTGTCCAGGGTCTATCGTTCCTC
GTCATACCGGCCTTTATCCTCGCTATCGTGCATATCATCTTAGCCGGTGA
TCCAGACGAACATATTGATCGCGCCTTGCTGGCCGGGTATATCTTCCTGG
CCTGTATTCCTACCACTATCGCTTCGAATGTCGTCATGACTCGCTCGGCG
GGCGGTGACGATGCCGCCGCGCTGGTGGAAGTCATTATTGCGAATTTCCT
GGGCCCGTTCATCACCGCTGGGTGGACGGTTACTTTGCTTCCAAAGTCGT
CGGAGTTTGATGTCTGGAGGTCGGGGGATGGGGATCTCTCTGATATGTAC
CGCGATGTGTTTAAGCAGTTGGGTCTGGCGGTCTTGTTGCCGTTGGTGGT
GGGTCAGTTGATACGCTGGGTTTGGCCGGACATCGTGGGCAAAGTGTTGG
CTAAGTATCGCATTGCGAAGATAAGCACCGCGTGCTTGATTCTGTTGGTT
TGGTCAACCTTCTCTTCTTGCTTCGCGACAGGAGCGCTCCAGACTCTTTC
CGCTTCTAGTATTGTCTTCGTGGTTCTGTTCAATATTGCGCTGTATATGT
TCCTTACGGCTGTTTGCTTCTATTGTTCTCGCCCGCCGAGGATCATCTCT
GGTGTGTCGTTTACGGTGAAAGGGAAGACATTTTATCCCTTCCAGCAGAT
GAATCCTCAGGAGACTATTGCCGTCTGTTTCTGTGGTCCGGCGAAGAGTA
CTGCACTGGGCATTCCGCTGCTTTATGCCATGTGGGGTCCGTTGAGTCTG
TATATCAAGTCGAAGACGTCGGTGCCTGTGCTGCTGTATACCACGGAGCA
GATTTGTGTGGCGCATTTCTTTGTGCATATGTTCAAGTGGTGGCATCGGC
GGGTTGAGAGGAAGAGTGCCAGCGTAAGTGATGTGGAGTGTGATGGAGAG
GGAAATGCAAATGAAAATGAGGAGAAGTTGGACGGTTCAGGGTCTGATGG
GAGGAATCTGGATAATCAGAGCAAAGGGGCAGATGTGAGTCTGTCCCAGG
AGCATAATAATTAAATGTCTATACCCAACCATGACCCCACATCCACCAGG
GGCATAACACAAACCTTCAAAACCATCGCCCTCTTCATCCTCCACCAATG
GCTCCTCATCGGCATCGGAGTCGCCTGCGTCTTGGCCTACTATTTCCCCA
ACGTCGCCAAGAGCGGCGGCATCATCCGCTCCGAATATAGCATTCTCTAC
GGCGCAATGGCCCTCATTTTCTTGATCTCGGGTCTCAGCGTGCCTCGAGA
AAAGCTCATTATTCACCTCCTCAACTGGCGACTGCATGTTCTTGTCCAGG
GTCTATCGTTCCTCGTCATACCGGCCTTTATCCTCGCTATCGTGCATATC
ATCTTAGCCGGTGATCCAGACGAACATATTGATCGCGCCTTGCTGGCCGG
GTATATCTTCCTGGCCTGTATTCCTACCACTATCGCTTCGAATGTCGTCA
TGACTCGCTCGGCGGGCGGTGACGATGCCGCCGCGCTGGTGGAAGTCATT
ATTGCGAATTTCCTGGGCCCGTTCATCACCGCTGGGTGGACGGTTACTTT
GCTTCCAAAGTCGTCGGAGTTTGATGTCTGGAGGTCGGGGGATGGGGATC
TCTCTGATATGTACCGCGATGTGTTTAAGCAGTTGGGTCTGGCGGTCTTG
TTGCCGTTGGTGGTGGGTCAGTTGATACGCTGGGTTTGGCCGGACATCGT
GGGCAAAGTGTTGGCTAAGTATCGCATTGCGAAGATAAGCACCGCGTGCT
TGATTCTGTTGGTTTGGTCAACCTTCTCTTCTTGCTTCGCGACAGGAGCG
CTCCAGACTCTTTCCGCTTCTAGTATTGTCTTCGTGGTTCTGTTCAATAT
TGCGCTGTATATGTTCCTTACGGCTGTTTGCTTCTATTGTTCTCGCCCGC
CGAGGATCATCTCTGGTGTGTCGTTTACGGTGAAAGGGAAGACATTTTAT
CCCTTCCAGCAGATGAATCCTCAGGAGACTATTGCCGTCTGTTTCTGTGG
TCCGGCGAAGAGTACTGCACTGGGCATTCCGCTGCTTTATGCCATGTGGG
GTCCGTTGAGTCTGTATATCAAGTCGAAGACGTCGGTGCCTGTGCTGCTG
TATACCACGGAGCAGATTTGTGTGGCGCATTTCTTTGTGCATATGTTCAA
GTGGTGGCATCGGCGGGTTGAGAGGAAGAGTGCCAGCGTAAGTGATGTGG
AGTGTGATGGAGAGGGAAATGCAAATGAAAATGAGGAGAAGTTGGACGGT
TCAGGGTCTGATGGGAGGAATCTGGATAATCAGAGCAAAGGGGCAGATGT
GAGTCTGTCCCAGGAGCATAATAATTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009178-T1.utr5p1 | KJC3_009178-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR038770 |
| DBxref | InterPro:IPR016833 |
| DBxref | PFAM:PF13593 |
| DBxref | PFAM:PF01758 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4769422..4770955 + |
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