You are here

Home

KJC3_009189-T1, KJC3_009189-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009189-T1
Unique NameKJC3_009189-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:4801969..4804082+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009189-T1 ID=KJC3_009189-T1|Name=KJC3_009189-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2114bp|location=Sequence derived from alignment at ch6:4801969..4804082+ (Aspergillus niger KJC3)
GCGAGCTCGATTCGGAGATGCGAAGTTTCCCCATCCAGTCATTCCAGCAG
CCGGATTAACATCACATCTGTAAACTCCTCACCTTGTAGCTAGTGTGTTC
ACGGCTATCAACCTTTTGCAATCTTCACTTTCTCGTTGCCATCCTGACGA
ACCCCTACACCCCCTCCATCAGTCAGGATCTTCCCCGCAGGCCACTGCCT
GCCTCACCCCACCATGCCGCCTTACTCAACAGCTCAAAAGCAATGTATAA
TGCAATTCGTGAACCTCACCCAAGCAAAGGATGCAGTAGCCGCAAAGGTA
CATATTGTCTCATTGCTTCTTTTGCTTCTCCTTCCGCAGATGCCATATCG
TCCAACCAGTCTTATCTGCGCTCATCACGTGTTCCTCCATGACTGACTTC
TCGCATGCATATAGTTCTTGAAAGCAGCTCGCTGGAATGTGGAGCAAGCT
CTTGATGCGTGAGTATAGAATCTTTTTGTGTTCTATTCTCTCTCTTTACA
TCTTGCTATGCTATTGCGTTTCCACTCTTGCGGTCGCGGTTCAAGGGACC
GATCATCTTATACCTCGCTTGGTCATTTCAATACGTTAGGCCTGGCGACG
TCTCATCTGTCTGTATCCCTCGTCCAGCGGGACTGAATCAAGGTACTGCT
AGGTGTTGGTGCAAAGCCATCCTAAAAACACCTCATTGTCCACACATGAA
CGCATGCCGTCGGGCGGAGACGGCCGAAGTCGTAAATCTGACGCTGTCAG
ATGTCACGCTGTCGCATGCGATGTGCAGTAAATCGACTGTCAATCAAGTT
TCACTCACCTCAGAATGTTTTACCTGCGGCAGCTTCAGACAAGAGACGTC
AACAAGCGTGCAGTATGTCTGATATCAAATGTCGAAATCGACGTCTTCCA
TTCAGATTTTCTCGCACTTTACCTGGAATTCGTGCATTAAAGAAGGCTGC
ACTGAGGTCTATTTCCCAATTATTTTAATCATACAAGTACCTCTCTCTTC
GCGGAATGCCTACCTCAAGACCGAAGAAGAACGGGACATCCTGCTACAAT
TGAGACCAGCCCAGCCTGCGTATTGAAATCCAAGCATGCATTAGAAATCA
TCCACACTTGGCATTCTTATATCCTCTGCTTCATACACTCACCAACCATG
AGATTCAACCAACTGATCTCTAACAGTCGCTAATATCAACCTCACCTCCA
GATACTTCCAAAGCTCCTCCGGTGCCGGCGGTAGCACATCCTCATTGAGC
AAGATCTTCGACAGTTATAGAGGTTCGCGCACCCTCCCACCACCATGAAA
TCTTAAAACTAACGTCCACCAGATGCCCCAGAAGACAACCCCGACGGGAT
CGGCATCGAAGGAGCCATGAAATACCTCGGGGACATCAAAGTCGGCCTCG
ACGAAGTGGCATGCCTAGGGATTGCCGAGCTACTCAAATCCCCCTCAATG
GGCGAATTCACCCGCGAAGGCTTTATCAACGGCTGGAGAATAACTGGGTA
AATACCCTACTTCCTCTCGCCATCCCACCCCCACCTACATACAATACAAG
CTAATATATGGATATAGATCCGACTCCCTCGACAAAATGATCGCCCACGC
CGCCGACATGCGCGCGCGCATCCCCATCCAACCGGACCTCTTCCGTCGCG
TCTACCGCTTCACCTTCCCCCTATGCCGCATGCAAGGCCAGCGGAATCTG
CAGTTCGAGATCGCGGCGGAGCAATGGCGCCTGTTCTTCACGCCGCAGAA
TGGCGGGGTGCAGTGGAACACGAGCAAGACTCCGTGGTTGGATTGGTGGA
TTGAGTTCCTGGAGGAGAGGGGGAAGAGGCCCGTGAATAAGGATCTGTGG
GAGCAGGTGGAGGTGTTTATGCGGAAGACGCTGGAGGATGAGAACTTTGG
GTGGTGGAGTGCGGATGGGGCATGGCCCGGGGCGTTGGATGATTTTGTGG
AGTGGGTGCAGAAGAAGAGGGGGAAGGAAGCGGGGGAAGATATGGAGGTT
GAGTAGCGGATGTTTTCTTTATTATTCTCGATATTTGAATCAATACGTTG
TCTACATGTGGTCAGGTAGATGAATGGATGGGGTTATAATATTACTATTA
CTGGTGTAGTGGTG
back to top

Coding sequence (CDS) from alignment at ch6:4801969..4804082+

>KJC3_009189-T1 ID=KJC3_009189-T1|Name=KJC3_009189-T1|organism=Aspergillus niger KJC3|type=CDS|length=4065bp|location=Sequence derived from alignment at ch6:4801969..4804082+ (Aspergillus niger KJC3)
ATGCCGCCTTACTCAACAGCTCAAAAGCAATGTATAATGCAATTCGTGAA
CCTCACCCAAGCAAAGGATGCAGTAGCCGCAAAGTTCTTGAAAGCAGCTC
GCTGGAATGTGGAGCAAGCTCTTGATGCATACTTCCAAAGCTCCTCCGGT
GCCGGCGGTAGCACATCCTCATTGAGCAAGATCTTCGACAGTTATAGAGA
TGCCCCAGAAGACAACCCCGACGGGATCGGCATCGAAGGAGCCATGAAAT
ACCTCGGGGACATCAAAGTCGGCCTCGACGAAGTGGCATGCCTAGGGATT
GCCGAGCTACTCAAATCCCCCTCAATGGGCGAATTCACCCGCGAAGGCTT
TATCAACGGCTGGAGAATAACTGGATCCGACTCCCTCGACAAAATGATCG
CCCACGCCGCCGACATGCGCGCGCGCATCCCCATCCAACCGGACCTCTTC
CGTCGCGTCTACCGCTTCACCTTCCCCCTATGCCGCATGCAAGGCCAGCG
GAATCTGCAGTTCGAGATCGCGGCGGAGCAATGGCGCCTGTTCTTCACGC
CGCAGAATGGCGGGGTGCAGTGGAACACGAGCAAGACTCCGTGGTTGGAT
TGGTGGATTGAGTTCCTGGAGGAGAGGGGGAAGAGGCCCGTGAATAAGGA
TCTGTGGGAGCAGGTGGAGGTGTTTATGCGGAAGACGCTGGAGGATGAGA
ACTTTGGGTGGTGGAGTGCGGATGGGGCATGGCCCGGGGCGTTGGATGAT
TTTGTGGAGTGGGTGCAGAAGAAGAGGGGGAAGGAAGCGGGGGAAGATAT
GGAGGTTGAGTAGATGCCGCCTTACTCAACAGCTCAAAAGCAATGTATAA
TGCAATTCGTGAACCTCACCCAAGCAAAGGATGCAGTAGCCGCAAAGTTC
TTGAAAGCAGCTCGCTGGAATGTGGAGCAAGCTCTTGATGCATACTTCCA
AAGCTCCTCCGGTGCCGGCGGTAGCACATCCTCATTGAGCAAGATCTTCG
ACAGTTATAGAGATGCCCCAGAAGACAACCCCGACGGGATCGGCATCGAA
GGAGCCATGAAATACCTCGGGGACATCAAAGTCGGCCTCGACGAAGTGGC
ATGCCTAGGGATTGCCGAGCTACTCAAATCCCCCTCAATGGGCGAATTCA
CCCGCGAAGGCTTTATCAACGGCTGGAGAATAACTGGATCCGACTCCCTC
GACAAAATGATCGCCCACGCCGCCGACATGCGCGCGCGCATCCCCATCCA
ACCGGACCTCTTCCGTCGCGTCTACCGCTTCACCTTCCCCCTATGCCGCA
TGCAAGGCCAGCGGAATCTGCAGTTCGAGATCGCGGCGGAGCAATGGCGC
CTGTTCTTCACGCCGCAGAATGGCGGGGTGCAGTGGAACACGAGCAAGAC
TCCGTGGTTGGATTGGTGGATTGAGTTCCTGGAGGAGAGGGGGAAGAGGC
CCGTGAATAAGGATCTGTGGGAGCAGGTGGAGGTGTTTATGCGGAAGACG
CTGGAGGATGAGAACTTTGGGTGGTGGAGTGCGGATGGGGCATGGCCCGG
GGCGTTGGATGATTTTGTGGAGTGGGTGCAGAAGAAGAGGGGGAAGGAAG
CGGGGGAAGATATGGAGGTTGAGTAGATGCCGCCTTACTCAACAGCTCAA
AAGCAATGTATAATGCAATTCGTGAACCTCACCCAAGCAAAGGATGCAGT
AGCCGCAAAGTTCTTGAAAGCAGCTCGCTGGAATGTGGAGCAAGCTCTTG
ATGCATACTTCCAAAGCTCCTCCGGTGCCGGCGGTAGCACATCCTCATTG
AGCAAGATCTTCGACAGTTATAGAGATGCCCCAGAAGACAACCCCGACGG
GATCGGCATCGAAGGAGCCATGAAATACCTCGGGGACATCAAAGTCGGCC
TCGACGAAGTGGCATGCCTAGGGATTGCCGAGCTACTCAAATCCCCCTCA
ATGGGCGAATTCACCCGCGAAGGCTTTATCAACGGCTGGAGAATAACTGG
ATCCGACTCCCTCGACAAAATGATCGCCCACGCCGCCGACATGCGCGCGC
GCATCCCCATCCAACCGGACCTCTTCCGTCGCGTCTACCGCTTCACCTTC
CCCCTATGCCGCATGCAAGGCCAGCGGAATCTGCAGTTCGAGATCGCGGC
GGAGCAATGGCGCCTGTTCTTCACGCCGCAGAATGGCGGGGTGCAGTGGA
ACACGAGCAAGACTCCGTGGTTGGATTGGTGGATTGAGTTCCTGGAGGAG
AGGGGGAAGAGGCCCGTGAATAAGGATCTGTGGGAGCAGGTGGAGGTGTT
TATGCGGAAGACGCTGGAGGATGAGAACTTTGGGTGGTGGAGTGCGGATG
GGGCATGGCCCGGGGCGTTGGATGATTTTGTGGAGTGGGTGCAGAAGAAG
AGGGGGAAGGAAGCGGGGGAAGATATGGAGGTTGAGTAGATGCCGCCTTA
CTCAACAGCTCAAAAGCAATGTATAATGCAATTCGTGAACCTCACCCAAG
CAAAGGATGCAGTAGCCGCAAAGTTCTTGAAAGCAGCTCGCTGGAATGTG
GAGCAAGCTCTTGATGCATACTTCCAAAGCTCCTCCGGTGCCGGCGGTAG
CACATCCTCATTGAGCAAGATCTTCGACAGTTATAGAGATGCCCCAGAAG
ACAACCCCGACGGGATCGGCATCGAAGGAGCCATGAAATACCTCGGGGAC
ATCAAAGTCGGCCTCGACGAAGTGGCATGCCTAGGGATTGCCGAGCTACT
CAAATCCCCCTCAATGGGCGAATTCACCCGCGAAGGCTTTATCAACGGCT
GGAGAATAACTGGATCCGACTCCCTCGACAAAATGATCGCCCACGCCGCC
GACATGCGCGCGCGCATCCCCATCCAACCGGACCTCTTCCGTCGCGTCTA
CCGCTTCACCTTCCCCCTATGCCGCATGCAAGGCCAGCGGAATCTGCAGT
TCGAGATCGCGGCGGAGCAATGGCGCCTGTTCTTCACGCCGCAGAATGGC
GGGGTGCAGTGGAACACGAGCAAGACTCCGTGGTTGGATTGGTGGATTGA
GTTCCTGGAGGAGAGGGGGAAGAGGCCCGTGAATAAGGATCTGTGGGAGC
AGGTGGAGGTGTTTATGCGGAAGACGCTGGAGGATGAGAACTTTGGGTGG
TGGAGTGCGGATGGGGCATGGCCCGGGGCGTTGGATGATTTTGTGGAGTG
GGTGCAGAAGAAGAGGGGGAAGGAAGCGGGGGAAGATATGGAGGTTGAGT
AGATGCCGCCTTACTCAACAGCTCAAAAGCAATGTATAATGCAATTCGTG
AACCTCACCCAAGCAAAGGATGCAGTAGCCGCAAAGTTCTTGAAAGCAGC
TCGCTGGAATGTGGAGCAAGCTCTTGATGCATACTTCCAAAGCTCCTCCG
GTGCCGGCGGTAGCACATCCTCATTGAGCAAGATCTTCGACAGTTATAGA
GATGCCCCAGAAGACAACCCCGACGGGATCGGCATCGAAGGAGCCATGAA
ATACCTCGGGGACATCAAAGTCGGCCTCGACGAAGTGGCATGCCTAGGGA
TTGCCGAGCTACTCAAATCCCCCTCAATGGGCGAATTCACCCGCGAAGGC
TTTATCAACGGCTGGAGAATAACTGGATCCGACTCCCTCGACAAAATGAT
CGCCCACGCCGCCGACATGCGCGCGCGCATCCCCATCCAACCGGACCTCT
TCCGTCGCGTCTACCGCTTCACCTTCCCCCTATGCCGCATGCAAGGCCAG
CGGAATCTGCAGTTCGAGATCGCGGCGGAGCAATGGCGCCTGTTCTTCAC
GCCGCAGAATGGCGGGGTGCAGTGGAACACGAGCAAGACTCCGTGGTTGG
ATTGGTGGATTGAGTTCCTGGAGGAGAGGGGGAAGAGGCCCGTGAATAAG
GATCTGTGGGAGCAGGTGGAGGTGTTTATGCGGAAGACGCTGGAGGATGA
GAACTTTGGGTGGTGGAGTGCGGATGGGGCATGGCCCGGGGCGTTGGATG
ATTTTGTGGAGTGGGTGCAGAAGAAGAGGGGGAAGGAAGCGGGGGAAGAT
ATGGAGGTTGAGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
DCN1_1KJC3_009189Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009189-T1KJC3_009189-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009189-T1.utr5p1KJC3_009189-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009189-T1.exon1KJC3_009189-T1.exon1Aspergillus niger KJC3exon
KJC3_009189-T1.exon2KJC3_009189-T1.exon2Aspergillus niger KJC3exon
KJC3_009189-T1.exon3KJC3_009189-T1.exon3Aspergillus niger KJC3exon
KJC3_009189-T1.exon4KJC3_009189-T1.exon4Aspergillus niger KJC3exon
KJC3_009189-T1.exon5KJC3_009189-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009189-T1.cdsKJC3_009189-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009189-T1.utr3p1KJC3_009189-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009060
DBxrefInterPro:IPR005176
DBxrefPFAM:PF14555
DBxrefPFAM:PF03556
ProductScaffold-type E3 ligase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:4801969..4804082 +
Powered by Drupal