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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4932030..4933842- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009231-T1 ID=KJC3_009231-T1|Name=KJC3_009231-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1813bp|location=Sequence derived from alignment at ch6:4932030..4933842- (Aspergillus niger KJC3)
GGAGTCAATATCACCATCCACCCTTTCCATGTCACGGATAAATCAATAAT
GGTATCGATAAGAAGGTCTAGTGCAGATAAACCATCGACTTCGAGACAAT
GCCCTATTCCAGCATTTCTTCCCGCCCCAAAAGATCAGTCTCACTCTTCC
TCTGCATATTCAAGTCCACTAAGGGCAGCCATTCAATGGTGCCATGTGTG
AGAAAGATGGTGCATATGCAGCGTATCATGGCTGGCTGTTAACTTCCTTT
TGTGCCGTCTGCAGCATTCGATGGCTTCGGTCCAGGCTTTGGCATGGGAG
ATCCGCAGTATCCACTGAGGTTTGCGGTTCCAAGCTGCTGCCGTCGTTAT
TGGCTCCTTGACCGTGATGGCAAACCGATTGACCATTCAGACGAGATCCG
AGTGGACCCGAATCTGGCAATGGAGATAAGAGCTTGCTGACGAACTGCAG
AAAAATTTGGGAGAGGGACAGGAAGAAAAATGGAGTAAAATGGCGTGCCG
AATTAACCAGCCCATCTGCGTCACAACAAACCCAAGTCTCCGAGTCCCAG
TGACCCTAAGCAGCACACCATCATGAGTTTATCAACAACGACAGTCGAAA
AACGGCTACTCGCAACTGCAGAACATCTCAATGCCTCTAATAAATTCCGT
CCAGCGTCCGTTCCGTGGGTACATCCCCATTTGGAGCAGGGCGTGGTGCC
GATTAAAGGCCGCCAGCTGCGTGCCTCGCAACCCATCCGAAAGGGCGAGC
TCCTGATGATTGACGTGCCCTATGCGCTCATTCCCGTCGTCGATGATCCG
GCCAGTAGCGATAGTCTCCTGTGCAGCAATCCAACCTGTAGTCGTCAGAC
GCAGCACAGTTCGGGACGAATCTCGTGTCCCAATCGCTGTCTCGCAGATG
TAGTCTGGTGCAGTTCGACCTGCCAGGAAGCTGATCAATTGCGCCATGAA
TTCGAGTGCACCTGGCTGCAGAGATACGCCTCGCCCATCCGCGCAAAATG
GGGCGAATACGACTTTGGCATGATGTGGCTGATTGTCCGCATCCTCGCCT
CACGCCAAACGGAGCGACAGCAGCTGCTTGATGCCAATAACGAAACGACT
CAGCGTTTCAAGGGTGGCTGGGAAGCCATCCAGTCCTTCTGTGGCTCGAT
AGAGAGCTGGTCACACGCCCAGGTGCGATCATGGACAGCGTTGGTGAAGA
AGTATCTTCGCAGTAGTCCGATCTTGCCACACGACCTAAGCGTTGACGAG
ATCGTGGCTCTGATCTGCCGGGAGGAAGCCAACTCATTTGGCTTGTATCC
GCGGGAGACGGGTGTATATCCTGTTCCAGAACCCCCTGTCGACCGGGGAG
AGCAGTTTGGTGCGGCCGTTTATCCTCGAGCAGCGATTGCTAACCATTCG
TGCAGTCCTAATGTAAGAGCCTCCAAGTCCACCCTTGACTATTAGCTAAT
ATGACCGGTCCAGATCATGCATAAACCCGATCATCACGGACGAATGGTGT
TTACTGCCTCGAAGGACATTGCAGCCGGCGAGGAGTGCTGCATATCCTAT
TTCGACTTGAGCAAACGCGTCGACCTTAAGTCCCGTCGAGATCACCTTCA
GGGTCTGTTCAGATTCGTCTGCGGGTGTGACCGATGTACGGCTGAGGAGC
CATCGGAAAAGGAGTCCGACTGGGTTGGACTGCCTTTCTTGGAATAGAGT
GTTAGCACCAATGACTCTTATAGGCCGAGAATGTCTAGTGTTTCTCGGGA
TACTCTTGGGTTCGGTTTCTTTGCCTGCAGTTTAAGCGCCGATATGTCAC
CAGCTGGTCCTGG back to topCoding sequence (CDS) from alignment at ch6:4932030..4933842- >KJC3_009231-T1 ID=KJC3_009231-T1|Name=KJC3_009231-T1|organism=Aspergillus niger KJC3|type=CDS|length=2148bp|location=Sequence derived from alignment at ch6:4932030..4933842- (Aspergillus niger KJC3)
ATCATGCATAAACCCGATCATCACGGACGAATGGTGTTTACTGCCTCGAA
GGACATTGCAGCCGGCGAGGAGTGCTGCATATCCTATTTCGACTTGAGCA
AACGCGTCGACCTTAAGTCCCGTCGAGATCACCTTCAGGGTCTGTTCAGA
TTCGTCTGCGGGTGTGACCGATGTACGGCTGAGGAGCCATCGGAAAAGGA
GTCCGACTGGGTTGGACTGCCTTTCTTGGAATAGATGAGTTTATCAACAA
CGACAGTCGAAAAACGGCTACTCGCAACTGCAGAACATCTCAATGCCTCT
AATAAATTCCGTCCAGCGTCCGTTCCGTGGGTACATCCCCATTTGGAGCA
GGGCGTGGTGCCGATTAAAGGCCGCCAGCTGCGTGCCTCGCAACCCATCC
GAAAGGGCGAGCTCCTGATGATTGACGTGCCCTATGCGCTCATTCCCGTC
GTCGATGATCCGGCCAGTAGCGATAGTCTCCTGTGCAGCAATCCAACCTG
TAGTCGTCAGACGCAGCACAGTTCGGGACGAATCTCGTGTCCCAATCGCT
GTCTCGCAGATGTAGTCTGGTGCAGTTCGACCTGCCAGGAAGCTGATCAA
TTGCGCCATGAATTCGAGTGCACCTGGCTGCAGAGATACGCCTCGCCCAT
CCGCGCAAAATGGGGCGAATACGACTTTGGCATGATGTGGCTGATTGTCC
GCATCCTCGCCTCACGCCAAACGGAGCGACAGCAGCTGCTTGATGCCAAT
AACGAAACGACTCAGCGTTTCAAGGGTGGCTGGGAAGCCATCCAGTCCTT
CTGTGGCTCGATAGAGAGCTGGTCACACGCCCAGGTGCGATCATGGACAG
CGTTGGTGAAGAAGTATCTTCGCAGTAGTCCGATCTTGCCACACGACCTA
AGCGTTGACGAGATCGTGGCTCTGATCTGCCGGGAGGAAGCCAACTCATT
TGGCTTGTATCCGCGGGAGACGGGTGTATATCCTGTTCCAGAACCCCCTG
TCGACCGGGGAGAGCAGTTTGGTGCGGCCGTTTATCCTCGAGCAGCGATT
GCTAACCATTCGTGCAGTCCTAATATCATGCATAAACCCGATCATCACGG
ACGAATGGTGTTTACTGCCTCGAAGGACATTGCAGCCGGCGAGGAGTGCT
GCATATCCTATTTCGACTTGAGCAAACGCGTCGACCTTAAGTCCCGTCGA
GATCACCTTCAGGGTCTGTTCAGATTCGTCTGCGGGTGTGACCGATGTAC
GGCTGAGGAGCCATCGGAAAAGGAGTCCGACTGGGTTGGACTGCCTTTCT
TGGAATAGATGAGTTTATCAACAACGACAGTCGAAAAACGGCTACTCGCA
ACTGCAGAACATCTCAATGCCTCTAATAAATTCCGTCCAGCGTCCGTTCC
GTGGGTACATCCCCATTTGGAGCAGGGCGTGGTGCCGATTAAAGGCCGCC
AGCTGCGTGCCTCGCAACCCATCCGAAAGGGCGAGCTCCTGATGATTGAC
GTGCCCTATGCGCTCATTCCCGTCGTCGATGATCCGGCCAGTAGCGATAG
TCTCCTGTGCAGCAATCCAACCTGTAGTCGTCAGACGCAGCACAGTTCGG
GACGAATCTCGTGTCCCAATCGCTGTCTCGCAGATGTAGTCTGGTGCAGT
TCGACCTGCCAGGAAGCTGATCAATTGCGCCATGAATTCGAGTGCACCTG
GCTGCAGAGATACGCCTCGCCCATCCGCGCAAAATGGGGCGAATACGACT
TTGGCATGATGTGGCTGATTGTCCGCATCCTCGCCTCACGCCAAACGGAG
CGACAGCAGCTGCTTGATGCCAATAACGAAACGACTCAGCGTTTCAAGGG
TGGCTGGGAAGCCATCCAGTCCTTCTGTGGCTCGATAGAGAGCTGGTCAC
ACGCCCAGGTGCGATCATGGACAGCGTTGGTGAAGAAGTATCTTCGCAGT
AGTCCGATCTTGCCACACGACCTAAGCGTTGACGAGATCGTGGCTCTGAT
CTGCCGGGAGGAAGCCAACTCATTTGGCTTGTATCCGCGGGAGACGGGTG
TATATCCTGTTCCAGAACCCCCTGTCGACCGGGGAGAGCAGTTTGGTGCG
GCCGTTTATCCTCGAGCAGCGATTGCTAACCATTCGTGCAGTCCTAAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009231-T1.utr3p1 | KJC3_009231-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009231-T1.utr5p1 | KJC3_009231-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR001214 |
| DBxref | PFAM:PF00856 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4932030..4933842 - |
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