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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:40050..42485+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009294-T2 ID=KJC3_009294-T2|Name=KJC3_009294-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2436bp|location=Sequence derived from alignment at ch7:40050..42485+ (Aspergillus niger KJC3) CCTCCTTCCACCCCCTCGCCCGACGTGTGGAAGTCGTCCAAATGCCCCAG
CATCCCAGAAAAATACAACGTATCTCAAGGGCGTGTATGTTACACCCTCA
TTGACCCTTAGGCCCCCGCTCTAATAGCGCTCAGGTGACCGTTGCCATCG
ACGTAGCATAAAATGCACAAAAACGCGAGGCCCACTCGAGCCCTGTCAGA
ACTGTGTGGATTTCGATATACCCTGTACCTATGAGCGTCCATCACGGAAA
AGGGGTGGTCGTAGAGGAGCCCGCGAAGGGGAACAGGAGGCTGCATGCCG
ACCGGGCGGCGAGGTTGCCGCTACTACCCCCTCTCGACCAGCCCATTCGG
AAGATGATCTTCAAGTTGGCGTGTATAGTCATTTATCTACAGCTGTCGAT
AATAGCTCCTGGGCAACCACGGATCAGCACTGTAACTCACATTCACCGCT
GACGCCCTGGAAGGCACTTGCAATCGCCTGTCATTCTGTGGTGCTGGATC
TCGCCCAGGTGTACTTTGAGATTGTCTATCCGATGTAGTTCTCTCATTTT
CGTTCTTGAGAGGATAAGCTATAAGAGATTTGCTCCTGGACTAACCGCCT
TCTACTACGCAGATTTCCTCTATTCCATCCACCATCATTCTTGAGAGCCC
TCCGGAATGAAAAGCATCTCGAGGACCAAGGATTATTCGCCTCAACAATG
GCAATGTGTGCCTTAGCCTCCGCACGCGCCAGGGATGGCGGTTTATATTC
GAATCAGCGATCACCGTCACAGTTGTCACATCCGCCACCAGAGGTTTTCT
CGACTGCAGCTAAGGAATCTATCCCTCCGAATTTGGCTGCAGCAAGAGGC
ATCGAATATATGAGAGCATGTGCGATTCTCAGCGTTGCCGCCATTCAAAA
TGGTCAGATCCGGGAGATGCATCAATATCTAGGGATGTATCATACATTAA
GTATTATGGAAGGGTTGCACGATGAGAAGTTATGGCCGAGAGACTTGGGT
GTCGTGAACGTGGAGGTTCGACGGAGACTGGTATGTCACTGTGCCTATGC
GATAGCTTCCACTAGTGTCAAACTAATGCTGGAATTAGTTCTGGTCGATG
TATACACTAGACGTGTTTTCGGCGACCGTATGGGGAGGCATGATCCGTTT
CAGAGAAGTTCAGTCAAATGTACGCTATCCGAGAGAGGTGAACGACGATG
TGCTTGATTTTGCAAACGAAGCATCGCTATCGGCGGACTGTACCACGCCC
GCTTCCAATCCTTATGAACCCTCGGTTTGGATGCGTGGGTGGAATTTCAC
TACTGATCTTTATCGAATACTGGAGCATGCTATAGACGGCCAGCGGCAAA
GTCTGCGCGCTGAGAATGAGAGCCCCTGGTCGTTATTCCGCCCGACCCCT
GTCCCGGGCCCTTTGATCATGGAGCATGTACATTCCCTATTCTCGGCCTT
ACCGTCGCAGCTTCAATCAAGCAAGCCTGCCACCGGTGATCCTGAACATG
ATATTGTTGGATTCCAATCCGCTAATATCCAAGCAACGCTCCAGCTTCTT
AACATGGTCCTTTCTTCAAGCGAGGACCAAGGAGTGGAGGAGAAATGCGA
GGTTGCCGGGAACGTGCTCAGCGTCTTTAGCACAGTGCCAATTGAATATC
TCAGAGCAATCAGTTCCCCGCTGGTATGTTGTTTCCCTGCATACTCTCAT
ACTTCTCCGCTCCCGCCACTTTGGATACACGAAGCACTAACTCTTGAAGC
TCTACCACTTGGGGGGAATTGGGTTTATCCTTGGGTCTGTCATGGAAGGA
AGCCTGTCTGAGATGTCTTACCAAAGAGTCCGCAAGCTTCTGTAAGAATT
CAATAGCATCAGGTGTCGGGTTCAAGCCCAAGTTGCTAATTGATGAGAAG
ATTAGAGATGGCAGCACTTTTGTCTCAAATGGAGTCAGGCCTTACCCGCT
CCACTGGCGCCAGTGAACGACTCAAATCACAGGTTAAGCGAATAGATGAC
TATATGGATAAAACTCGGCATGCCAATATGCGCTCTGAGCAAGCGGAAAT
TGACCAATCGCAAGACTTCGAAGGTTACATACGACCTATCCCAGGCCAGC
CAACAGACTTCGATGACACATTAGCTTATTTCGAACTGCCCCCAGACTTA
CTGGATGACTGGCCCTGGTCGTCTGGAGCTGGCGTGTTGGACGGCATGTT
TCCGATTGCGTTAAGGAAAACAGACGACTAGAAAGATGTTTATCGGCACA
TTCTCCGCAACCATTCCCGAACGATAATATTGCAAATGACATGATGGCAA
GTGTGATCCCCCATGGACTTCCGGAGTGGGAGTGTTTCAGGAACAGTATC
TAGATTTGAATGTAATTATTCGACTCTCGTGTGTTCCTCCCAGTCTGGAT
CAAAACCGGTATACAAATAGAGACGGTCGCTGGCAG back to topCoding sequence (CDS) from alignment at ch7:40050..42485+ >KJC3_009294-T2 ID=KJC3_009294-T2|Name=KJC3_009294-T2|organism=Aspergillus niger KJC3|type=CDS|length=7710bp|location=Sequence derived from alignment at ch7:40050..42485+ (Aspergillus niger KJC3) ATGCCCCAGCATCCCAGAAAAATACAACGTATCTCAAGGGCGTGTGACCG TTGCCATCGACGTAGCATAAAATGCACAAAAACGCGAGGCCCACTCGAGC CCTGTCAGAACTGTGTGGATTTCGATATACCCTGTACCTATGAGCGTCCA TCACGGAAAAGGGGTGGTCGTAGAGGAGCCCGCGAAGGGGAACAGGAGGC TGCATGCCGACCGGGCGGCGAGGTTGCCGCTACTACCCCCTCTCGACCAG CCCATTCGGAAGATGATCTTCAAGTTGGCGTGTATAGTCATTTATCTACA GCTGTCGATAATAGCTCCTGGGCAACCACGGATCAGCACTGTAACTCACA TTCACCGCTGACGCCCTGGAAGGCACTTGCAATCGCCTGTCATTCTGTGG TGCTGGATCTCGCCCAGGTGTACTTTGAGATTGTCTATCCGATATTTCCT CTATTCCATCCACCATCATTCTTGAGAGCCCTCCGGAATGAAAAGCATCT CGAGGACCAAGGATTATTCGCCTCAACAATGGCAATGTGTGCCTTAGCCT CCGCACGCGCCAGGGATGGCGGTTTATATTCGAATCAGCGATCACCGTCA CAGTTGTCACATCCGCCACCAGAGGTTTTCTCGACTGCAGCTAAGGAATC TATCCCTCCGAATTTGGCTGCAGCAAGAGGCATCGAATATATGAGAGCAT GTGCGATTCTCAGCGTTGCCGCCATTCAAAATGGTCAGATCCGGGAGATG CATCAATATCTAGGGATGTATCATACATTAAGTATTATGGAAGGGTTGCA CGATGAGAAGTTATGGCCGAGAGACTTGGGTGTCGTGAACGTGGAGGTTC GACGGAGACTGTTCTGGTCGATGTATACACTAGACGTGTTTTCGGCGACC GTATGGGGAGGCATGATCCGTTTCAGAGAAGTTCAGTCAAATGTACGCTA TCCGAGAGAGGTGAACGACGATGTGCTTGATTTTGCAAACGAAGCATCGC TATCGGCGGACTGTACCACGCCCGCTTCCAATCCTTATGAACCCTCGGTT TGGATGCGTGGGTGGAATTTCACTACTGATCTTTATCGAATACTGGAGCA TGCTATAGACGGCCAGCGGCAAAGTCTGCGCGCTGAGAATGAGAGCCCCT GGTCGTTATTCCGCCCGACCCCTGTCCCGGGCCCTTTGATCATGGAGCAT GTACATTCCCTATTCTCGGCCTTACCGTCGCAGCTTCAATCAAGCAAGCC TGCCACCGGTGATCCTGAACATGATATTGTTGGATTCCAATCCGCTAATA TCCAAGCAACGCTCCAGCTTCTTAACATGGTCCTTTCTTCAAGCGAGGAC CAAGGAGTGGAGGAGAAATGCGAGGTTGCCGGGAACGTGCTCAGCGTCTT TAGCACAGTGCCAATTGAATATCTCAGAGCAATCAGTTCCCCGCTGCTCT ACCACTTGGGGGGAATTGGGTTTATCCTTGGGTCTGTCATGGAAGGAAGC CTGTCTGAGATGTCTTACCAAAGAGTCCGCAAGCTTCTGTAAATGCCCCA GCATCCCAGAAAAATACAACGTATCTCAAGGGCGTGTGACCGTTGCCATC GACGTAGCATAAAATGCACAAAAACGCGAGGCCCACTCGAGCCCTGTCAG AACTGTGTGGATTTCGATATACCCTGTACCTATGAGCGTCCATCACGGAA AAGGGGTGGTCGTAGAGGAGCCCGCGAAGGGGAACAGGAGGCTGCATGCC GACCGGGCGGCGAGGTTGCCGCTACTACCCCCTCTCGACCAGCCCATTCG GAAGATGATCTTCAAGTTGGCGTGTATAGTCATTTATCTACAGCTGTCGA TAATAGCTCCTGGGCAACCACGGATCAGCACTGTAACTCACATTCACCGC TGACGCCCTGGAAGGCACTTGCAATCGCCTGTCATTCTGTGGTGCTGGAT CTCGCCCAGGTGTACTTTGAGATTGTCTATCCGATATTTCCTCTATTCCA TCCACCATCATTCTTGAGAGCCCTCCGGAATGAAAAGCATCTCGAGGACC AAGGATTATTCGCCTCAACAATGGCAATGTGTGCCTTAGCCTCCGCACGC GCCAGGGATGGCGGTTTATATTCGAATCAGCGATCACCGTCACAGTTGTC ACATCCGCCACCAGAGGTTTTCTCGACTGCAGCTAAGGAATCTATCCCTC CGAATTTGGCTGCAGCAAGAGGCATCGAATATATGAGAGCATGTGCGATT CTCAGCGTTGCCGCCATTCAAAATGGTCAGATCCGGGAGATGCATCAATA TCTAGGGATGTATCATACATTAAGTATTATGGAAGGGTTGCACGATGAGA AGTTATGGCCGAGAGACTTGGGTGTCGTGAACGTGGAGGTTCGACGGAGA CTGTTCTGGTCGATGTATACACTAGACGTGTTTTCGGCGACCGTATGGGG AGGCATGATCCGTTTCAGAGAAGTTCAGTCAAATGTACGCTATCCGAGAG AGGTGAACGACGATGTGCTTGATTTTGCAAACGAAGCATCGCTATCGGCG GACTGTACCACGCCCGCTTCCAATCCTTATGAACCCTCGGTTTGGATGCG TGGGTGGAATTTCACTACTGATCTTTATCGAATACTGGAGCATGCTATAG ACGGCCAGCGGCAAAGTCTGCGCGCTGAGAATGAGAGCCCCTGGTCGTTA TTCCGCCCGACCCCTGTCCCGGGCCCTTTGATCATGGAGCATGTACATTC CCTATTCTCGGCCTTACCGTCGCAGCTTCAATCAAGCAAGCCTGCCACCG GTGATCCTGAACATGATATTGTTGGATTCCAATCCGCTAATATCCAAGCA ACGCTCCAGCTTCTTAACATGGTCCTTTCTTCAAGCGAGGACCAAGGAGT GGAGGAGAAATGCGAGGTTGCCGGGAACGTGCTCAGCGTCTTTAGCACAG TGCCAATTGAATATCTCAGAGCAATCAGTTCCCCGCTGCTCTACCACTTG GGGGGAATTGGGTTTATCCTTGGGTCTGTCATGGAAGGAAGCCTGTCTGA GATGTCTTACCAAAGAGTCCGCAAGCTTCTGTAAATGCCCCAGCATCCCA GAAAAATACAACGTATCTCAAGGGCGTGTGACCGTTGCCATCGACGTAGC ATAAAATGCACAAAAACGCGAGGCCCACTCGAGCCCTGTCAGAACTGTGT GGATTTCGATATACCCTGTACCTATGAGCGTCCATCACGGAAAAGGGGTG GTCGTAGAGGAGCCCGCGAAGGGGAACAGGAGGCTGCATGCCGACCGGGC GGCGAGGTTGCCGCTACTACCCCCTCTCGACCAGCCCATTCGGAAGATGA TCTTCAAGTTGGCGTGTATAGTCATTTATCTACAGCTGTCGATAATAGCT CCTGGGCAACCACGGATCAGCACTGTAACTCACATTCACCGCTGACGCCC TGGAAGGCACTTGCAATCGCCTGTCATTCTGTGGTGCTGGATCTCGCCCA GGTGTACTTTGAGATTGTCTATCCGATATTTCCTCTATTCCATCCACCAT CATTCTTGAGAGCCCTCCGGAATGAAAAGCATCTCGAGGACCAAGGATTA TTCGCCTCAACAATGGCAATGTGTGCCTTAGCCTCCGCACGCGCCAGGGA TGGCGGTTTATATTCGAATCAGCGATCACCGTCACAGTTGTCACATCCGC CACCAGAGGTTTTCTCGACTGCAGCTAAGGAATCTATCCCTCCGAATTTG GCTGCAGCAAGAGGCATCGAATATATGAGAGCATGTGCGATTCTCAGCGT TGCCGCCATTCAAAATGGTCAGATCCGGGAGATGCATCAATATCTAGGGA TGTATCATACATTAAGTATTATGGAAGGGTTGCACGATGAGAAGTTATGG CCGAGAGACTTGGGTGTCGTGAACGTGGAGGTTCGACGGAGACTGTTCTG GTCGATGTATACACTAGACGTGTTTTCGGCGACCGTATGGGGAGGCATGA TCCGTTTCAGAGAAGTTCAGTCAAATGTACGCTATCCGAGAGAGGTGAAC GACGATGTGCTTGATTTTGCAAACGAAGCATCGCTATCGGCGGACTGTAC CACGCCCGCTTCCAATCCTTATGAACCCTCGGTTTGGATGCGTGGGTGGA ATTTCACTACTGATCTTTATCGAATACTGGAGCATGCTATAGACGGCCAG CGGCAAAGTCTGCGCGCTGAGAATGAGAGCCCCTGGTCGTTATTCCGCCC GACCCCTGTCCCGGGCCCTTTGATCATGGAGCATGTACATTCCCTATTCT CGGCCTTACCGTCGCAGCTTCAATCAAGCAAGCCTGCCACCGGTGATCCT GAACATGATATTGTTGGATTCCAATCCGCTAATATCCAAGCAACGCTCCA GCTTCTTAACATGGTCCTTTCTTCAAGCGAGGACCAAGGAGTGGAGGAGA AATGCGAGGTTGCCGGGAACGTGCTCAGCGTCTTTAGCACAGTGCCAATT GAATATCTCAGAGCAATCAGTTCCCCGCTGCTCTACCACTTGGGGGGAAT TGGGTTTATCCTTGGGTCTGTCATGGAAGGAAGCCTGTCTGAGATGTCTT ACCAAAGAGTCCGCAAGCTTCTGTAAATGCCCCAGCATCCCAGAAAAATA CAACGTATCTCAAGGGCGTGTGACCGTTGCCATCGACGTAGCATAAAATG CACAAAAACGCGAGGCCCACTCGAGCCCTGTCAGAACTGTGTGGATTTCG ATATACCCTGTACCTATGAGCGTCCATCACGGAAAAGGGGTGGTCGTAGA GGAGCCCGCGAAGGGGAACAGGAGGCTGCATGCCGACCGGGCGGCGAGGT TGCCGCTACTACCCCCTCTCGACCAGCCCATTCGGAAGATGATCTTCAAG TTGGCGTGTATAGTCATTTATCTACAGCTGTCGATAATAGCTCCTGGGCA ACCACGGATCAGCACTGTAACTCACATTCACCGCTGACGCCCTGGAAGGC ACTTGCAATCGCCTGTCATTCTGTGGTGCTGGATCTCGCCCAGGTGTACT TTGAGATTGTCTATCCGATATTTCCTCTATTCCATCCACCATCATTCTTG AGAGCCCTCCGGAATGAAAAGCATCTCGAGGACCAAGGATTATTCGCCTC AACAATGGCAATGTGTGCCTTAGCCTCCGCACGCGCCAGGGATGGCGGTT TATATTCGAATCAGCGATCACCGTCACAGTTGTCACATCCGCCACCAGAG GTTTTCTCGACTGCAGCTAAGGAATCTATCCCTCCGAATTTGGCTGCAGC AAGAGGCATCGAATATATGAGAGCATGTGCGATTCTCAGCGTTGCCGCCA TTCAAAATGGTCAGATCCGGGAGATGCATCAATATCTAGGGATGTATCAT ACATTAAGTATTATGGAAGGGTTGCACGATGAGAAGTTATGGCCGAGAGA CTTGGGTGTCGTGAACGTGGAGGTTCGACGGAGACTGTTCTGGTCGATGT ATACACTAGACGTGTTTTCGGCGACCGTATGGGGAGGCATGATCCGTTTC AGAGAAGTTCAGTCAAATGTACGCTATCCGAGAGAGGTGAACGACGATGT GCTTGATTTTGCAAACGAAGCATCGCTATCGGCGGACTGTACCACGCCCG CTTCCAATCCTTATGAACCCTCGGTTTGGATGCGTGGGTGGAATTTCACT ACTGATCTTTATCGAATACTGGAGCATGCTATAGACGGCCAGCGGCAAAG TCTGCGCGCTGAGAATGAGAGCCCCTGGTCGTTATTCCGCCCGACCCCTG TCCCGGGCCCTTTGATCATGGAGCATGTACATTCCCTATTCTCGGCCTTA CCGTCGCAGCTTCAATCAAGCAAGCCTGCCACCGGTGATCCTGAACATGA TATTGTTGGATTCCAATCCGCTAATATCCAAGCAACGCTCCAGCTTCTTA ACATGGTCCTTTCTTCAAGCGAGGACCAAGGAGTGGAGGAGAAATGCGAG GTTGCCGGGAACGTGCTCAGCGTCTTTAGCACAGTGCCAATTGAATATCT CAGAGCAATCAGTTCCCCGCTGCTCTACCACTTGGGGGGAATTGGGTTTA TCCTTGGGTCTGTCATGGAAGGAAGCCTGTCTGAGATGTCTTACCAAAGA GTCCGCAAGCTTCTGTAAATGCCCCAGCATCCCAGAAAAATACAACGTAT CTCAAGGGCGTGTGACCGTTGCCATCGACGTAGCATAAAATGCACAAAAA CGCGAGGCCCACTCGAGCCCTGTCAGAACTGTGTGGATTTCGATATACCC TGTACCTATGAGCGTCCATCACGGAAAAGGGGTGGTCGTAGAGGAGCCCG CGAAGGGGAACAGGAGGCTGCATGCCGACCGGGCGGCGAGGTTGCCGCTA CTACCCCCTCTCGACCAGCCCATTCGGAAGATGATCTTCAAGTTGGCGTG TATAGTCATTTATCTACAGCTGTCGATAATAGCTCCTGGGCAACCACGGA TCAGCACTGTAACTCACATTCACCGCTGACGCCCTGGAAGGCACTTGCAA TCGCCTGTCATTCTGTGGTGCTGGATCTCGCCCAGGTGTACTTTGAGATT GTCTATCCGATATTTCCTCTATTCCATCCACCATCATTCTTGAGAGCCCT CCGGAATGAAAAGCATCTCGAGGACCAAGGATTATTCGCCTCAACAATGG CAATGTGTGCCTTAGCCTCCGCACGCGCCAGGGATGGCGGTTTATATTCG AATCAGCGATCACCGTCACAGTTGTCACATCCGCCACCAGAGGTTTTCTC GACTGCAGCTAAGGAATCTATCCCTCCGAATTTGGCTGCAGCAAGAGGCA TCGAATATATGAGAGCATGTGCGATTCTCAGCGTTGCCGCCATTCAAAAT GGTCAGATCCGGGAGATGCATCAATATCTAGGGATGTATCATACATTAAG TATTATGGAAGGGTTGCACGATGAGAAGTTATGGCCGAGAGACTTGGGTG TCGTGAACGTGGAGGTTCGACGGAGACTGTTCTGGTCGATGTATACACTA GACGTGTTTTCGGCGACCGTATGGGGAGGCATGATCCGTTTCAGAGAAGT TCAGTCAAATGTACGCTATCCGAGAGAGGTGAACGACGATGTGCTTGATT TTGCAAACGAAGCATCGCTATCGGCGGACTGTACCACGCCCGCTTCCAAT CCTTATGAACCCTCGGTTTGGATGCGTGGGTGGAATTTCACTACTGATCT TTATCGAATACTGGAGCATGCTATAGACGGCCAGCGGCAAAGTCTGCGCG CTGAGAATGAGAGCCCCTGGTCGTTATTCCGCCCGACCCCTGTCCCGGGC CCTTTGATCATGGAGCATGTACATTCCCTATTCTCGGCCTTACCGTCGCA GCTTCAATCAAGCAAGCCTGCCACCGGTGATCCTGAACATGATATTGTTG GATTCCAATCCGCTAATATCCAAGCAACGCTCCAGCTTCTTAACATGGTC CTTTCTTCAAGCGAGGACCAAGGAGTGGAGGAGAAATGCGAGGTTGCCGG GAACGTGCTCAGCGTCTTTAGCACAGTGCCAATTGAATATCTCAGAGCAA TCAGTTCCCCGCTGCTCTACCACTTGGGGGGAATTGGGTTTATCCTTGGG TCTGTCATGGAAGGAAGCCTGTCTGAGATGTCTTACCAAAGAGTCCGCAA GCTTCTGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
Term | Definition |
GO:0006351 | transcription, DNA-templated |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009294-T2.utr5p1 | KJC3_009294-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009294-T2.utr3p1 | KJC3_009294-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR007219 |
DBxref | InterPro:IPR036864 |
DBxref | InterPro:IPR001138 |
DBxref | PFAM:PF00172 |
DBxref | PFAM:PF04082 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch7 | supercontig | ch7:40050..42485 + |
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