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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:136970..138033+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009334-T1 ID=KJC3_009334-T1|Name=KJC3_009334-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1064bp|location=Sequence derived from alignment at ch7:136970..138033+ (Aspergillus niger KJC3)
GGCGGGGAAGCGCGGGGATGCAATGCCTCGAGACGGGAACATTGATTGCA
TTCCATAACTTGAAAAGCTGCTACAGACACTACATTGTACGGAGATTAGT
GTTTTCTTCTTGACAGTTCCTTTGTGTACAGGTTTCTGCAATGGCTCTAC
CAGCTTGCAATCTGCTCAAGGGCAAAACAGCTGCCATCACCGGCGGCACG
ACAGGAATCGGGCGTGCGATCGCATTGGCCTTCATCACCCAAGGCTGCAA
TGTTGCAGTCAACCATCTGGGTCTCCCCCAAGACGAGGTGCATCGGCACA
GTCTGCTTGACGAAGTCAAGTCCATCCAACAAGGCGGCATTGCGGCTGGC
AAGATTCTCGAGATTCCGGGCGATGTGACTGCCCCGGAGACCAGCATAAA
CCTCGTCAAAGAAGCCGTTTCTCAATGGGGGAAGCTAGATATTTTTGTCG
CCAACGCAGGCGTGTTCAAACAAGCTGAATTTCTCCAGTGAGTCTATTAT
CCTATAGTGAACGACAGAGAAGTGGTCACTAACATACCCAGGATCGAGTC
GTCTCTTCTCGACCACAGCATCGACGTCAACATCAAAGGCTGCTTCTACT
CCTGCCAAGCAGCTGCCCGGCAGATGGTCAAGCAGGGCCATGGCGGCTTC
ATCATCGGTATCTCCTCCGTCAGCGCGCTGGTCGGTGGAGGCCTCCAGAC
CCACTACACGCCCACTAAGGCCGCTGTGCTTTCCATGATGCAGTCCATGG
CCATTTCTCTGGGCAAGGATCGGATCAGATGCAATGCTCTGATGCCTGGG
ACCATCGCTACTCAGTTGGCTGATCATGATATGAAGAACCCTACCAAGAA
GGCTGCGCTCGAGGCGCGCATTCCGTTGGGGCGGATCGGAAACCCGGACG
ATATGGCTGGCCCAGCGGTATTTCTGGCTTGTGAGGAGATGAGTCGATAT
GTAAATGCCACAGGGCTGTTGGCAGACGGTGGGATGTTTAGTAACTTGCA
ATAGATTGGTCTGAAAATAGTTTTTATGATGATTTGTAGTTATTGGGTCT
AATCTACTTGTTCC back to topCoding sequence (CDS) from alignment at ch7:136970..138033+ >KJC3_009334-T1 ID=KJC3_009334-T1|Name=KJC3_009334-T1|organism=Aspergillus niger KJC3|type=CDS|length=1620bp|location=Sequence derived from alignment at ch7:136970..138033+ (Aspergillus niger KJC3)
ATGGCTCTACCAGCTTGCAATCTGCTCAAGGGCAAAACAGCTGCCATCAC
CGGCGGCACGACAGGAATCGGGCGTGCGATCGCATTGGCCTTCATCACCC
AAGGCTGCAATGTTGCAGTCAACCATCTGGGTCTCCCCCAAGACGAGGTG
CATCGGCACAGTCTGCTTGACGAAGTCAAGTCCATCCAACAAGGCGGCAT
TGCGGCTGGCAAGATTCTCGAGATTCCGGGCGATGTGACTGCCCCGGAGA
CCAGCATAAACCTCGTCAAAGAAGCCGTTTCTCAATGGGGGAAGCTAGAT
ATTTTTGTCGCCAACGCAGGCGTGTTCAAACAAGCTGAATTTCTCCAGAT
CGAGTCGTCTCTTCTCGACCACAGCATCGACGTCAACATCAAAGGCTGCT
TCTACTCCTGCCAAGCAGCTGCCCGGCAGATGGTCAAGCAGGGCCATGGC
GGCTTCATCATCGGTATCTCCTCCGTCAGCGCGCTGGTCGGTGGAGGCCT
CCAGACCCACTACACGCCCACTAAGGCCGCTGTGCTTTCCATGATGCAGT
CCATGGCCATTTCTCTGGGCAAGGATCGGATCAGATGCAATGCTCTGATG
CCTGGGACCATCGCTACTCAGTTGGCTGATCATGATATGAAGAACCCTAC
CAAGAAGGCTGCGCTCGAGGCGCGCATTCCGTTGGGGCGGATCGGAAACC
CGGACGATATGGCTGGCCCAGCGGTATTTCTGGCTTGTGAGGAGATGAGT
CGATATGTAAATGCCACAGGGCTGTTGGCAGACGGTGGGATGTTTAGTAA
CTTGCAATAGATGGCTCTACCAGCTTGCAATCTGCTCAAGGGCAAAACAG
CTGCCATCACCGGCGGCACGACAGGAATCGGGCGTGCGATCGCATTGGCC
TTCATCACCCAAGGCTGCAATGTTGCAGTCAACCATCTGGGTCTCCCCCA
AGACGAGGTGCATCGGCACAGTCTGCTTGACGAAGTCAAGTCCATCCAAC
AAGGCGGCATTGCGGCTGGCAAGATTCTCGAGATTCCGGGCGATGTGACT
GCCCCGGAGACCAGCATAAACCTCGTCAAAGAAGCCGTTTCTCAATGGGG
GAAGCTAGATATTTTTGTCGCCAACGCAGGCGTGTTCAAACAAGCTGAAT
TTCTCCAGATCGAGTCGTCTCTTCTCGACCACAGCATCGACGTCAACATC
AAAGGCTGCTTCTACTCCTGCCAAGCAGCTGCCCGGCAGATGGTCAAGCA
GGGCCATGGCGGCTTCATCATCGGTATCTCCTCCGTCAGCGCGCTGGTCG
GTGGAGGCCTCCAGACCCACTACACGCCCACTAAGGCCGCTGTGCTTTCC
ATGATGCAGTCCATGGCCATTTCTCTGGGCAAGGATCGGATCAGATGCAA
TGCTCTGATGCCTGGGACCATCGCTACTCAGTTGGCTGATCATGATATGA
AGAACCCTACCAAGAAGGCTGCGCTCGAGGCGCGCATTCCGTTGGGGCGG
ATCGGAAACCCGGACGATATGGCTGGCCCAGCGGTATTTCTGGCTTGTGA
GGAGATGAGTCGATATGTAAATGCCACAGGGCTGTTGGCAGACGGTGGGA
TGTTTAGTAACTTGCAATAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009334-T1.utr5p1 | KJC3_009334-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009334-T1.utr3p1 | KJC3_009334-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:136970..138033 + |
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