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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:412342..413617+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009445-T1 ID=KJC3_009445-T1|Name=KJC3_009445-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1276bp|location=Sequence derived from alignment at ch7:412342..413617+ (Aspergillus niger KJC3)
ATTCTACAGCTGGTTCATTCCCTAAAATTACCTCATACTTCACTCCAAGG
TTTTACGGAATTGCAACACCATGACGGTTACAAAGCGAAATGTCGTGGTG
ATCGGTGCCACTGGCTCTCAGGCAAGGCTACCAATACCCACGTGCCATTA
GACGACGCAGGTAGCTGACCTTGAACAATAGGGCGGATCTGTGGTTGCGG
AATTACTGAAGCACCCTCATCTATATCATGTCCGGGCCATTACACGTAAC
ACCTCCAAGCCTAAGGCCCAGAAGCTCGCTGCTCAGGGAGTTGAACTCTT
CTGCGCCGACTTGGAGGGTGGCAGAGAGGCTCTAACCGCGGCCTTCGCTG
GTGCGGATGTGATCTACGCTCTGACTGACTTCTGGCAGAAGCAGTCGGCA
GCAGCTGAGATTGAACAGGGTAAGGCGATTGCGGATGCTGCTGCCGAAAT
CACGACGCTGCAGCACTTCATCTGGAGCGCTTTGCCAGACCCTGTTGCCC
TATCCAACGGCCAATTCCTGAATGTGCATCACTGGAAGGGTAAGAGTTTG
ATTACCGAGTATATCCAGACCCAGAAACCGGACCTGTGGGCAAAGACGAC
CACCGTTCTTTTCCCCAATTACTTTGAGAACACCTTGACCGATCCCCAGC
GGTATCTGCCTGTCAAGGTGAGTTATTCTGTTCGATCAAATCTATATTGA
ATGCTCATGTATATCACGACATAGGACGCCAATGGCACCTACAATCTCAG
GTTCCCGCACAGCCCGCACACGGTTCTGCCCAATGTGGCCATCGGTGATA
CCGGCAAGCTGGTGCACCTGGTCCTCGAAGCTGGCTCCACCTACTTCACC
AAGACCATCGCCTTCTGGGCTCAGGCGTTGTCTGAGGCCGACAAGCTCGC
TGAGTTGGGCTCCTGTATGGTTCCCCTAGTAGACTTGTGGCTCAGCATGC
TAATTTACGCAATAGGCTACAATGTTCCGACTCACTATCACGCGTCCAGC
TCTAGCGAGTTCCAGCAGCTTCTCATGACTCGGGACGGCATGTCGGCGGA
CATTGCTTTGGACTTCACCGAGCAGTTGCTGATCTTTGAAAAGTGCGGAA
ATGTCTACGCACGGGAGGAGTTTGTGCAATCCAAGGATGTAGGTCAACAC
CTCAGTTCTCCTTCACGAGTACTACATTTGCTAACTGTGTTAGATTCCTG
GACTGAAACTTCAGACCTGGTCCGAGTTCATTCGCCAGCACAAGCTGCTC
TAAATAGGGTGGAGGGATACACAAAC back to topCoding sequence (CDS) from alignment at ch7:412342..413617+ >KJC3_009445-T1 ID=KJC3_009445-T1|Name=KJC3_009445-T1|organism=Aspergillus niger KJC3|type=CDS|length=4800bp|location=Sequence derived from alignment at ch7:412342..413617+ (Aspergillus niger KJC3)
ATGACGGTTACAAAGCGAAATGTCGTGGTGATCGGTGCCACTGGCTCTCA
GGGCGGATCTGTGGTTGCGGAATTACTGAAGCACCCTCATCTATATCATG
TCCGGGCCATTACACGTAACACCTCCAAGCCTAAGGCCCAGAAGCTCGCT
GCTCAGGGAGTTGAACTCTTCTGCGCCGACTTGGAGGGTGGCAGAGAGGC
TCTAACCGCGGCCTTCGCTGGTGCGGATGTGATCTACGCTCTGACTGACT
TCTGGCAGAAGCAGTCGGCAGCAGCTGAGATTGAACAGGGTAAGGCGATT
GCGGATGCTGCTGCCGAAATCACGACGCTGCAGCACTTCATCTGGAGCGC
TTTGCCAGACCCTGTTGCCCTATCCAACGGCCAATTCCTGAATGTGCATC
ACTGGAAGGGTAAGAGTTTGATTACCGAGTATATCCAGACCCAGAAACCG
GACCTGTGGGCAAAGACGACCACCGTTCTTTTCCCCAATTACTTTGAGAA
CACCTTGACCGATCCCCAGCGGTATCTGCCTGTCAAGGACGCCAATGGCA
CCTACAATCTCAGGTTCCCGCACAGCCCGCACACGGTTCTGCCCAATGTG
GCCATCGGTGATACCGGCAAGCTGGTGCACCTGGTCCTCGAAGCTGGCTC
CACCTACTTCACCAAGACCATCGCCTTCTGGGCTCAGGCGTTGTCTGAGG
CCGACAAGCTCGCTGAGTTGGGCTCCTGCTACAATGTTCCGACTCACTAT
CACGCGTCCAGCTCTAGCGAGTTCCAGCAGCTTCTCATGACTCGGGACGG
CATGTCGGCGGACATTGCTTTGGACTTCACCGAGCAGTTGCTGATCTTTG
AAAAGTGCGGAAATGTCTACGCACGGGAGGAGTTTGTGCAATCCAAGGAT
ATTCCTGGACTGAAACTTCAGACCTGGTCCGAGTTCATTCGCCAGCACAA
GCTGCTCTAAATGACGGTTACAAAGCGAAATGTCGTGGTGATCGGTGCCA
CTGGCTCTCAGGGCGGATCTGTGGTTGCGGAATTACTGAAGCACCCTCAT
CTATATCATGTCCGGGCCATTACACGTAACACCTCCAAGCCTAAGGCCCA
GAAGCTCGCTGCTCAGGGAGTTGAACTCTTCTGCGCCGACTTGGAGGGTG
GCAGAGAGGCTCTAACCGCGGCCTTCGCTGGTGCGGATGTGATCTACGCT
CTGACTGACTTCTGGCAGAAGCAGTCGGCAGCAGCTGAGATTGAACAGGG
TAAGGCGATTGCGGATGCTGCTGCCGAAATCACGACGCTGCAGCACTTCA
TCTGGAGCGCTTTGCCAGACCCTGTTGCCCTATCCAACGGCCAATTCCTG
AATGTGCATCACTGGAAGGGTAAGAGTTTGATTACCGAGTATATCCAGAC
CCAGAAACCGGACCTGTGGGCAAAGACGACCACCGTTCTTTTCCCCAATT
ACTTTGAGAACACCTTGACCGATCCCCAGCGGTATCTGCCTGTCAAGGAC
GCCAATGGCACCTACAATCTCAGGTTCCCGCACAGCCCGCACACGGTTCT
GCCCAATGTGGCCATCGGTGATACCGGCAAGCTGGTGCACCTGGTCCTCG
AAGCTGGCTCCACCTACTTCACCAAGACCATCGCCTTCTGGGCTCAGGCG
TTGTCTGAGGCCGACAAGCTCGCTGAGTTGGGCTCCTGCTACAATGTTCC
GACTCACTATCACGCGTCCAGCTCTAGCGAGTTCCAGCAGCTTCTCATGA
CTCGGGACGGCATGTCGGCGGACATTGCTTTGGACTTCACCGAGCAGTTG
CTGATCTTTGAAAAGTGCGGAAATGTCTACGCACGGGAGGAGTTTGTGCA
ATCCAAGGATATTCCTGGACTGAAACTTCAGACCTGGTCCGAGTTCATTC
GCCAGCACAAGCTGCTCTAAATGACGGTTACAAAGCGAAATGTCGTGGTG
ATCGGTGCCACTGGCTCTCAGGGCGGATCTGTGGTTGCGGAATTACTGAA
GCACCCTCATCTATATCATGTCCGGGCCATTACACGTAACACCTCCAAGC
CTAAGGCCCAGAAGCTCGCTGCTCAGGGAGTTGAACTCTTCTGCGCCGAC
TTGGAGGGTGGCAGAGAGGCTCTAACCGCGGCCTTCGCTGGTGCGGATGT
GATCTACGCTCTGACTGACTTCTGGCAGAAGCAGTCGGCAGCAGCTGAGA
TTGAACAGGGTAAGGCGATTGCGGATGCTGCTGCCGAAATCACGACGCTG
CAGCACTTCATCTGGAGCGCTTTGCCAGACCCTGTTGCCCTATCCAACGG
CCAATTCCTGAATGTGCATCACTGGAAGGGTAAGAGTTTGATTACCGAGT
ATATCCAGACCCAGAAACCGGACCTGTGGGCAAAGACGACCACCGTTCTT
TTCCCCAATTACTTTGAGAACACCTTGACCGATCCCCAGCGGTATCTGCC
TGTCAAGGACGCCAATGGCACCTACAATCTCAGGTTCCCGCACAGCCCGC
ACACGGTTCTGCCCAATGTGGCCATCGGTGATACCGGCAAGCTGGTGCAC
CTGGTCCTCGAAGCTGGCTCCACCTACTTCACCAAGACCATCGCCTTCTG
GGCTCAGGCGTTGTCTGAGGCCGACAAGCTCGCTGAGTTGGGCTCCTGCT
ACAATGTTCCGACTCACTATCACGCGTCCAGCTCTAGCGAGTTCCAGCAG
CTTCTCATGACTCGGGACGGCATGTCGGCGGACATTGCTTTGGACTTCAC
CGAGCAGTTGCTGATCTTTGAAAAGTGCGGAAATGTCTACGCACGGGAGG
AGTTTGTGCAATCCAAGGATATTCCTGGACTGAAACTTCAGACCTGGTCC
GAGTTCATTCGCCAGCACAAGCTGCTCTAAATGACGGTTACAAAGCGAAA
TGTCGTGGTGATCGGTGCCACTGGCTCTCAGGGCGGATCTGTGGTTGCGG
AATTACTGAAGCACCCTCATCTATATCATGTCCGGGCCATTACACGTAAC
ACCTCCAAGCCTAAGGCCCAGAAGCTCGCTGCTCAGGGAGTTGAACTCTT
CTGCGCCGACTTGGAGGGTGGCAGAGAGGCTCTAACCGCGGCCTTCGCTG
GTGCGGATGTGATCTACGCTCTGACTGACTTCTGGCAGAAGCAGTCGGCA
GCAGCTGAGATTGAACAGGGTAAGGCGATTGCGGATGCTGCTGCCGAAAT
CACGACGCTGCAGCACTTCATCTGGAGCGCTTTGCCAGACCCTGTTGCCC
TATCCAACGGCCAATTCCTGAATGTGCATCACTGGAAGGGTAAGAGTTTG
ATTACCGAGTATATCCAGACCCAGAAACCGGACCTGTGGGCAAAGACGAC
CACCGTTCTTTTCCCCAATTACTTTGAGAACACCTTGACCGATCCCCAGC
GGTATCTGCCTGTCAAGGACGCCAATGGCACCTACAATCTCAGGTTCCCG
CACAGCCCGCACACGGTTCTGCCCAATGTGGCCATCGGTGATACCGGCAA
GCTGGTGCACCTGGTCCTCGAAGCTGGCTCCACCTACTTCACCAAGACCA
TCGCCTTCTGGGCTCAGGCGTTGTCTGAGGCCGACAAGCTCGCTGAGTTG
GGCTCCTGCTACAATGTTCCGACTCACTATCACGCGTCCAGCTCTAGCGA
GTTCCAGCAGCTTCTCATGACTCGGGACGGCATGTCGGCGGACATTGCTT
TGGACTTCACCGAGCAGTTGCTGATCTTTGAAAAGTGCGGAAATGTCTAC
GCACGGGAGGAGTTTGTGCAATCCAAGGATATTCCTGGACTGAAACTTCA
GACCTGGTCCGAGTTCATTCGCCAGCACAAGCTGCTCTAAATGACGGTTA
CAAAGCGAAATGTCGTGGTGATCGGTGCCACTGGCTCTCAGGGCGGATCT
GTGGTTGCGGAATTACTGAAGCACCCTCATCTATATCATGTCCGGGCCAT
TACACGTAACACCTCCAAGCCTAAGGCCCAGAAGCTCGCTGCTCAGGGAG
TTGAACTCTTCTGCGCCGACTTGGAGGGTGGCAGAGAGGCTCTAACCGCG
GCCTTCGCTGGTGCGGATGTGATCTACGCTCTGACTGACTTCTGGCAGAA
GCAGTCGGCAGCAGCTGAGATTGAACAGGGTAAGGCGATTGCGGATGCTG
CTGCCGAAATCACGACGCTGCAGCACTTCATCTGGAGCGCTTTGCCAGAC
CCTGTTGCCCTATCCAACGGCCAATTCCTGAATGTGCATCACTGGAAGGG
TAAGAGTTTGATTACCGAGTATATCCAGACCCAGAAACCGGACCTGTGGG
CAAAGACGACCACCGTTCTTTTCCCCAATTACTTTGAGAACACCTTGACC
GATCCCCAGCGGTATCTGCCTGTCAAGGACGCCAATGGCACCTACAATCT
CAGGTTCCCGCACAGCCCGCACACGGTTCTGCCCAATGTGGCCATCGGTG
ATACCGGCAAGCTGGTGCACCTGGTCCTCGAAGCTGGCTCCACCTACTTC
ACCAAGACCATCGCCTTCTGGGCTCAGGCGTTGTCTGAGGCCGACAAGCT
CGCTGAGTTGGGCTCCTGCTACAATGTTCCGACTCACTATCACGCGTCCA
GCTCTAGCGAGTTCCAGCAGCTTCTCATGACTCGGGACGGCATGTCGGCG
GACATTGCTTTGGACTTCACCGAGCAGTTGCTGATCTTTGAAAAGTGCGG
AAATGTCTACGCACGGGAGGAGTTTGTGCAATCCAAGGATATTCCTGGAC
TGAAACTTCAGACCTGGTCCGAGTTCATTCGCCAGCACAAGCTGCTCTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009445-T1.utr5p1 | KJC3_009445-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009445-T1.utr3p1 | KJC3_009445-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR008030 |
| DBxref | PFAM:PF05368 |
| DBxref | PFAM:PF13460 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:412342..413617 + |
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