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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:463650..465434+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009467-T1 ID=KJC3_009467-T1|Name=KJC3_009467-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1785bp|location=Sequence derived from alignment at ch7:463650..465434+ (Aspergillus niger KJC3)
CCGGAAGCAGAATTGAAGTCCGGACCCACTTCTCAGCTCCGACGCCTCCC
GTGACTTCCGATCGTGAATGAGGTTGAACGGAATACTCTATCAGCCAACA
TCACAAAGAGAACGGTTTCAGGATGAAAAGGGATCGCGACTAACGACTCC
ACAACAAGTACTAGCTTGGATAACGCTGAAGCATTGATACAGGTGATGAA
ACCCTCAAGATACTCCACCTCCAGGCAAAAGGCCTGTCAGCAATGTGCTA
GTGCGAAAGCTCGGTGTGACCGCAGATCTGGAGGCAGGGAACCATGCTCA
AGATGTACGCAGCGTGGCATCTCATGCTCATATGCTCAGGAAGATGCCCT
TGAACGGAATCAAACAAGTCCTGTAGCACCGCCCAGTCCATTCTCGGTGT
CGGGTTCCTCGCTTACCGGGTTGGAAAGTGGCGTTCTGGCCATGAGTAAC
ATCTCAACTTCAACATTACCATCCTCTCTGGGAACTGGGGTGTTTGCTAA
CACCCAGAACGAGCTATCTGGGCTAGACGATGTCCTCGACTTCTCCTCTC
TGGATTTGGTTTGCCCTATAAACGCCGATGATATTCAGAACCGTTGGATT
CAGGCATACATTCCGATCCCTGGTCAAACAATCAAAACCTACCCTGACGG
TGTCAGATCATACATATATTTGACCCTTAGGTCATACTCTGCGATGGCTG
TTAGTGGCCGGGGGACCCTGCCCTTCATCCATCCCAAGCAGATGATCGCG
CAGTCAGCCGGGTCACCTCTCACTACCTGCCTGAGCTTGGTGCGAGTATG
CTCGAACCAGCTTCCCGGCAGTGGCCAGGCAGCAATTAGTGTTCTACGTC
GAGAAATACAGATTTTGGACCAGGATCGGGCGAAATACAGCAGTGACGGC
CTGTTTGTGGCCTTCCAGTCCTATCTAATATACTCCATGGTTTTGTTCTT
TGTACTGGGACAATCATGCGATGACGATTTCCGTGCTATCATGACGAGCC
TCCAAGAGCTAGCCTGCGCTTCATCTCGTCAAGGGTTGATATGTGCGGCT
GACCAACGACGAGCGCGGCCGAAATGGGAAGAATGGATTGTAGCTGAAGC
TAAACGTCGAACTCTTTACATTATGTATTTGTTCGATAGTATTCTCTCCA
GCCAAGAGGGGCTTCCTACATTCCTTGGCACTGAATTGCGGGGCTTGCCC
GCTCCGGCCAATAAACTACTGTGGCAGGCAGCAACGCGGTATGAGTGGGA
GAGGGAATATAACGTGCATATGGTGGACTGGATGGAAGGATGTCTAACGA
TCGACGAGTTATGGCCTACACCTGATGATATAGGGGAAGCTGGGGTTGCA
AGGCGACGTGCAAGGGTGGATCAGTGGCTGCAGAACCTTGATGAATATGG
GACAATGCTTTTCGCGATTATGAGATGTACTCACGGCGACTGATGGATGC
TACGTCAGTAACAGTTGATGCAGACACAGCTACCAGTGCCCAATCGGGAG
AGTCTCACCACCGTACCTTGAAGGGCCTTGGGTTATCCAATCCTAGGCTT
TATTAAGGTAGTCAGATGGGTTTTCATCAGCAACTCCTGTCAGGAAACAC
TCAGTTATTGTGGGTCTTTCCCTACAGGGAAGCCCGTAGCCCTTCGTCAA
GCCGTAGGGTGCAGTTCCTTACCCGAATAAGTATCACTGGTATCTGAGGC
GTAGCATAAAGTAGGGTTCTTGCCATGGTCAGCGCATTAGCTATGCAGCC
AGTGTTCTTGGTTGCAGCAACCCAACCAATCAGCT back to topCoding sequence (CDS) from alignment at ch7:463650..465434+ >KJC3_009467-T1 ID=KJC3_009467-T1|Name=KJC3_009467-T1|organism=Aspergillus niger KJC3|type=CDS|length=1248bp|location=Sequence derived from alignment at ch7:463650..465434+ (Aspergillus niger KJC3)
ATGAAACCCTCAAGATACTCCACCTCCAGGCAAAAGGCCTGTCAGCAATG
TGCTAGTGCGAAAGCTCGGTGTGACCGCAGATCTGGAGGCAGGGAACCAT
GCTCAAGATGTACGCAGCGTGGCATCTCATGCTCATATGCTCAGGAAGAT
GCCCTTGAACGGAATCAAACAAGTCCTGTAGCACCGCCCAGTCCATTCTC
GGTGTCGGGTTCCTCGCTTACCGGGTTGGAAAGTGGCGTTCTGGCCATGA
GTAACATCTCAACTTCAACATTACCATCCTCTCTGGGAACTGGGGTGTTT
GCTAACACCCAGAACGAGCTATCTGGGCTAGACGATGTCCTCGACTTCTC
CTCTCTGGATTTGGTTTGCCCTATAAACGCCGATGATATTCAGAACCGTT
GGATTCAGGCATACATTCCGATCCCTGGTCAAACAATCAAAACCTACCCT
GACGGTGTCAGATCATACATATATTTGACCCTTAGGTCATACTCTGCGAT
GGCTGTTAGTGGCCGGGGGACCCTGCCCTTCATCCATCCCAAGCAGATGA
TCGCGCAGTCAGCCGGGTCACCTCTCACTACCTGCCTGAGCTTGGTGCGA
GTATGCTCGAACCAGCTTCCCGGCAGTGGCCAGGCAGCAATTAGTGTTCT
ACGTCGAGAAATACAGATTTTGGACCAGGATCGGGCGAAATACAGCAGTG
ACGGCCTGTTTGTGGCCTTCCAGTCCTATCTAATATACTCCATGGTTTTG
TTCTTTGTACTGGGACAATCATGCGATGACGATTTCCGTGCTATCATGAC
GAGCCTCCAAGAGCTAGCCTGCGCTTCATCTCGTCAAGGGTTGATATGTG
CGGCTGACCAACGACGAGCGCGGCCGAAATGGGAAGAATGGATTGTAGCT
GAAGCTAAACGTCGAACTCTTTACATTATGTATTTGTTCGATAGTATTCT
CTCCAGCCAAGAGGGGCTTCCTACATTCCTTGGCACTGAATTGCGGGGCT
TGCCCGCTCCGGCCAATAAACTACTGTGGCAGGCAGCAACGCGGTATGAG
TGGGAGAGGGAATATAACGTGCATATGGTGGACTGGATGGAAGGATGTCT
AACGATCGACGAGTTATGGCCTACACCTGATGATATAGGGGAAGCTGGGG
TTGCAAGGCGACGTGCAAGGGTGGATCAGTGGCTGCAGAACCTTGATGAA
TATGGGACAATGCTTTTCGCGATTATGAGATGTACTCACGGCGACTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009467-T1.utr5p1 | KJC3_009467-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009467-T1.utr3p1 | KJC3_009467-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:463650..465434 + |
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