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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:477820..479237- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009473-T1 ID=KJC3_009473-T1|Name=KJC3_009473-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1418bp|location=Sequence derived from alignment at ch7:477820..479237- (Aspergillus niger KJC3)
AAAATCCAAAAATCTCTGTTTCCTCCAACCTCAGGCCACATCATACCATG
TCGCCCAACACCGCAGACGACGCTCTTTCATATAATTTTCAGAAGGCATG
CATTGATGGTAACCTTCGGGCAGTCCAGAGGGCTCTCGCCAGCGGAAGAC
TCTCTGCTAAGGATCTTGACACTGGACTAAGGATCAGTACTAAAGAGGCA
CATCCGGACATAGTAGCAGCTCTCTTTGAGGCAGGTGTGCCTATGTCGCC
AAATGCAATAGGCTGCCTCTGTGGGAATGATGCGAAACAGGACCCGCGCG
TCATTCGCCTCTACTTCGATCGTGGTCTGAAGCCTAGTGATTGTATTACG
ACTAAAGGCGAGCCTCTTTTACGGTACTTCAATTCCCAATAATTATTGGC
CTTCATAGAGAAACTAACTGTACTGGGTAATGTAGATTTTATTCGGTTGA
CTGTGCCCGGGAATTACTCGAGCGAGGCGTCGACCCCAACCGCTGCGGTC
CGAGAAAGATAAGCCCCCTCTCCAGCTCTCTTGACCTGGTTCACGAGGAC
AACGGGTCTACATTCGAATTACTTGTGAAATATGGGGCGAAGATGGATCC
CGGTCTCTTGTTTGATGCTCTTGTTTGGAGCAGCGATGCAGCTATCAAAT
TTCGTTTCCTTCTCTCCAAGGGTCTTGATCCGACCACGACAATTTCTGCA
GAATGGGGCACGCCGCTACATGTTGCAGCTCTCTTCGCCGATAAGGAGAT
TATTAGAATGCTTCTCGACTTGGGAGCAGATCCGAACTCCCGATCATACT
GTATGAAGTTCAAAAATAAAACCCCCGTGGAAGTCGCCGAGTGGAAGATG
CGAGCTTCTCATGAAGGCTCTTCTATGAAGGGTATGTATCAAAGTGTCAT
AGAGCTTCTCGGATCTACACAGATCGGAGTCTCTCTTCCTACAGTTGCTG
CGTCGGAGAGGTCAAATACCGAGAGCGATACGGAGCCCCCTGCCGCGAAT
AGAACGGAAATCAACGAACGACTCAATGCTGTCGACACTGGATTGTCAGG
TTCTTTAACGGGTGACTCGAATTGGACTGGCTCCCAAAAGACCCAGAATA
CCCGGAAGACACGAATTCCAGGGGAAGGCAGCGTTAGTAGCCGGACACGC
AGTCGTACCAAGACTGTCCCTTAGTTACGAACCTACTACGTATAAGTGTC
CGCGGTGATGGTTTAGAGAGTGATAGGTTGGCTATTCGGGGAATACCATT
CAAAAAGCTTCCGGGCATTCTATGATGCTGTGAGTCTGTTGATCCGCATG
TGCTTTGGAGTGAGTATGGATGGGCTACTTGGTGGTAAAAATTAGATCTT
AGAGACACGAGACGGGTACCCGCTGGAGCGAAGGGCTGCTCGTTGATAGC
TTAAAGAGATTGGTAGTG back to topCoding sequence (CDS) from alignment at ch7:477820..479237- >KJC3_009473-T1 ID=KJC3_009473-T1|Name=KJC3_009473-T1|organism=Aspergillus niger KJC3|type=CDS|length=2130bp|location=Sequence derived from alignment at ch7:477820..479237- (Aspergillus niger KJC3)
ATTTTATTCGGTTGACTGTGCCCGGGAATTACTCGAGCGAGGCGTCGACC
CCAACCGCTGCGGTCCGAGAAAGATAAGCCCCCTCTCCAGCTCTCTTGAC
CTGGTTCACGAGGACAACGGGTCTACATTCGAATTACTTGTGAAATATGG
GGCGAAGATGGATCCCGGTCTCTTGTTTGATGCTCTTGTTTGGAGCAGCG
ATGCAGCTATCAAATTTCGTTTCCTTCTCTCCAAGGGTCTTGATCCGACC
ACGACAATTTCTGCAGAATGGGGCACGCCGCTACATGTTGCAGCTCTCTT
CGCCGATAAGGAGATTATTAGAATGCTTCTCGACTTGGGAGCAGATCCGA
ACTCCCGATCATACTGTATGAAGTTCAAAAATAAAACCCCCGTGGAAGTC
GCCGAGTGGAAGATGCGAGCTTCTCATGAAGGCTCTTCTATGAAGGGTAT
GTATCAAAGTGTCATAGAGCTTCTCGGATCTACACAGATCGGAGTCTCTC
TTCCTACAGTTGCTGCGTCGGAGAGGTCAAATACCGAGAGCGATACGGAG
CCCCCTGCCGCGAATAGAACGGAAATCAACGAACGACTCAATGCTGTCGA
CACTGGATTGTCAGGTTCTTTAACGGGTGACTCGAATTGGACTGGCTCCC
AAAAGACCCAGAATACCCGGAAGACACGAATTCCAGGGGAAGGCAGCGTT
AGTAGCCGGACACGCAGTCGTACCAAGACTGTCCCTTAGATGTCGCCCAA
CACCGCAGACGACGCTCTTTCATATAATTTTCAGAAGGCATGCATTGATG
GTAACCTTCGGGCAGTCCAGAGGGCTCTCGCCAGCGGAAGACTCTCTGCT
AAGGATCTTGACACTGGACTAAGGATCAGTACTAAAGAGGCACATCCGGA
CATAGTAGCAGCTCTCTTTGAGGCAGGTGTGCCTATGTCGCCAAATGCAA
TAGGCTGCCTCTGTGGGAATGATGCGAAACAGGACCCGCGCGTCATTCGC
CTCTACTTCGATCGTGGTCTGAAGCCTAGTGATTGTATTACGACTAAAGG
CGAGCCTCTTTTACGATTTTATTCGGTTGACTGTGCCCGGGAATTACTCG
AGCGAGGCGTCGACCCCAACCGCTGCGGTCCGAGAAAGATAAGCCCCCTC
TCCAGCTCTCTTGACCTGGTTCACGAGGACAACGGGTCTACATTCGAATT
ACTTGTGAAATATGGGGCGAAGATGGATCCCGGTCTCTTGTTTGATGCTC
TTGTTTGGAGCAGCGATGCAGCTATCAAATTTCGTTTCCTTCTCTCCAAG
GGTCTTGATCCGACCACGACAATTTCTGCAGAATGGGGCACGCCGCTACA
TGTTGCAGCTCTCTTCGCCGATAAGGAGATTATTAGAATGCTTCTCGACT
TGGGAGCAGATCCGAACTCCCGATCATACTGTATGAAGTTCAAAAATAAA
ACCCCCGTGGAAGTCGCCGAGTGGAAGATGCGAGCTTCTCATGAAGGCTC
TTCTATGAAGGGTATGTATCAAAGTGTCATAGAGCTTCTCGGATCTACAC
AGATCGGAGTCTCTCTTCCTACAGTTGCTGCGTCGGAGAGGTCAAATACC
GAGAGCGATACGGAGCCCCCTGCCGCGAATAGAACGGAAATCAACGAACG
ACTCAATGCTGTCGACACTGGATTGTCAGGTTCTTTAACGGGTGACTCGA
ATTGGACTGGCTCCCAAAAGACCCAGAATACCCGGAAGACACGAATTCCA
GGGGAAGGCAGCGTTAGTAGCCGGACACGCAGTCGTACCAAGACTGTCCC
TTAGATGTCGCCCAACACCGCAGACGACGCTCTTTCATATAATTTTCAGA
AGGCATGCATTGATGGTAACCTTCGGGCAGTCCAGAGGGCTCTCGCCAGC
GGAAGACTCTCTGCTAAGGATCTTGACACTGGACTAAGGATCAGTACTAA
AGAGGCACATCCGGACATAGTAGCAGCTCTCTTTGAGGCAGGTGTGCCTA
TGTCGCCAAATGCAATAGGCTGCCTCTGTGGGAATGATGCGAAACAGGAC
CCGCGCGTCATTCGCCTCTACTTCGATCGTGGTCTGAAGCCTAGTGATTG
TATTACGACTAAAGGCGAGCCTCTTTTACG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009473-T1.utr3p1 | KJC3_009473-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009473-T1.utr5p1 | KJC3_009473-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13606 |
| DBxref | PFAM:PF00023 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:477820..479237 - |
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