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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:477820..479237- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009473-T1 ID=KJC3_009473-T1|Name=KJC3_009473-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1418bp|location=Sequence derived from alignment at ch7:477820..479237- (Aspergillus niger KJC3) AAAATCCAAAAATCTCTGTTTCCTCCAACCTCAGGCCACATCATACCATG
TCGCCCAACACCGCAGACGACGCTCTTTCATATAATTTTCAGAAGGCATG
CATTGATGGTAACCTTCGGGCAGTCCAGAGGGCTCTCGCCAGCGGAAGAC
TCTCTGCTAAGGATCTTGACACTGGACTAAGGATCAGTACTAAAGAGGCA
CATCCGGACATAGTAGCAGCTCTCTTTGAGGCAGGTGTGCCTATGTCGCC
AAATGCAATAGGCTGCCTCTGTGGGAATGATGCGAAACAGGACCCGCGCG
TCATTCGCCTCTACTTCGATCGTGGTCTGAAGCCTAGTGATTGTATTACG
ACTAAAGGCGAGCCTCTTTTACGGTACTTCAATTCCCAATAATTATTGGC
CTTCATAGAGAAACTAACTGTACTGGGTAATGTAGATTTTATTCGGTTGA
CTGTGCCCGGGAATTACTCGAGCGAGGCGTCGACCCCAACCGCTGCGGTC
CGAGAAAGATAAGCCCCCTCTCCAGCTCTCTTGACCTGGTTCACGAGGAC
AACGGGTCTACATTCGAATTACTTGTGAAATATGGGGCGAAGATGGATCC
CGGTCTCTTGTTTGATGCTCTTGTTTGGAGCAGCGATGCAGCTATCAAAT
TTCGTTTCCTTCTCTCCAAGGGTCTTGATCCGACCACGACAATTTCTGCA
GAATGGGGCACGCCGCTACATGTTGCAGCTCTCTTCGCCGATAAGGAGAT
TATTAGAATGCTTCTCGACTTGGGAGCAGATCCGAACTCCCGATCATACT
GTATGAAGTTCAAAAATAAAACCCCCGTGGAAGTCGCCGAGTGGAAGATG
CGAGCTTCTCATGAAGGCTCTTCTATGAAGGGTATGTATCAAAGTGTCAT
AGAGCTTCTCGGATCTACACAGATCGGAGTCTCTCTTCCTACAGTTGCTG
CGTCGGAGAGGTCAAATACCGAGAGCGATACGGAGCCCCCTGCCGCGAAT
AGAACGGAAATCAACGAACGACTCAATGCTGTCGACACTGGATTGTCAGG
TTCTTTAACGGGTGACTCGAATTGGACTGGCTCCCAAAAGACCCAGAATA
CCCGGAAGACACGAATTCCAGGGGAAGGCAGCGTTAGTAGCCGGACACGC
AGTCGTACCAAGACTGTCCCTTAGTTACGAACCTACTACGTATAAGTGTC
CGCGGTGATGGTTTAGAGAGTGATAGGTTGGCTATTCGGGGAATACCATT
CAAAAAGCTTCCGGGCATTCTATGATGCTGTGAGTCTGTTGATCCGCATG
TGCTTTGGAGTGAGTATGGATGGGCTACTTGGTGGTAAAAATTAGATCTT
AGAGACACGAGACGGGTACCCGCTGGAGCGAAGGGCTGCTCGTTGATAGC
TTAAAGAGATTGGTAGTG back to topCoding sequence (CDS) from alignment at ch7:477820..479237- >KJC3_009473-T1 ID=KJC3_009473-T1|Name=KJC3_009473-T1|organism=Aspergillus niger KJC3|type=CDS|length=2130bp|location=Sequence derived from alignment at ch7:477820..479237- (Aspergillus niger KJC3) ATTTTATTCGGTTGACTGTGCCCGGGAATTACTCGAGCGAGGCGTCGACC CCAACCGCTGCGGTCCGAGAAAGATAAGCCCCCTCTCCAGCTCTCTTGAC CTGGTTCACGAGGACAACGGGTCTACATTCGAATTACTTGTGAAATATGG GGCGAAGATGGATCCCGGTCTCTTGTTTGATGCTCTTGTTTGGAGCAGCG ATGCAGCTATCAAATTTCGTTTCCTTCTCTCCAAGGGTCTTGATCCGACC ACGACAATTTCTGCAGAATGGGGCACGCCGCTACATGTTGCAGCTCTCTT CGCCGATAAGGAGATTATTAGAATGCTTCTCGACTTGGGAGCAGATCCGA ACTCCCGATCATACTGTATGAAGTTCAAAAATAAAACCCCCGTGGAAGTC GCCGAGTGGAAGATGCGAGCTTCTCATGAAGGCTCTTCTATGAAGGGTAT GTATCAAAGTGTCATAGAGCTTCTCGGATCTACACAGATCGGAGTCTCTC TTCCTACAGTTGCTGCGTCGGAGAGGTCAAATACCGAGAGCGATACGGAG CCCCCTGCCGCGAATAGAACGGAAATCAACGAACGACTCAATGCTGTCGA CACTGGATTGTCAGGTTCTTTAACGGGTGACTCGAATTGGACTGGCTCCC AAAAGACCCAGAATACCCGGAAGACACGAATTCCAGGGGAAGGCAGCGTT AGTAGCCGGACACGCAGTCGTACCAAGACTGTCCCTTAGATGTCGCCCAA CACCGCAGACGACGCTCTTTCATATAATTTTCAGAAGGCATGCATTGATG GTAACCTTCGGGCAGTCCAGAGGGCTCTCGCCAGCGGAAGACTCTCTGCT AAGGATCTTGACACTGGACTAAGGATCAGTACTAAAGAGGCACATCCGGA CATAGTAGCAGCTCTCTTTGAGGCAGGTGTGCCTATGTCGCCAAATGCAA TAGGCTGCCTCTGTGGGAATGATGCGAAACAGGACCCGCGCGTCATTCGC CTCTACTTCGATCGTGGTCTGAAGCCTAGTGATTGTATTACGACTAAAGG CGAGCCTCTTTTACGATTTTATTCGGTTGACTGTGCCCGGGAATTACTCG AGCGAGGCGTCGACCCCAACCGCTGCGGTCCGAGAAAGATAAGCCCCCTC TCCAGCTCTCTTGACCTGGTTCACGAGGACAACGGGTCTACATTCGAATT ACTTGTGAAATATGGGGCGAAGATGGATCCCGGTCTCTTGTTTGATGCTC TTGTTTGGAGCAGCGATGCAGCTATCAAATTTCGTTTCCTTCTCTCCAAG GGTCTTGATCCGACCACGACAATTTCTGCAGAATGGGGCACGCCGCTACA TGTTGCAGCTCTCTTCGCCGATAAGGAGATTATTAGAATGCTTCTCGACT TGGGAGCAGATCCGAACTCCCGATCATACTGTATGAAGTTCAAAAATAAA ACCCCCGTGGAAGTCGCCGAGTGGAAGATGCGAGCTTCTCATGAAGGCTC TTCTATGAAGGGTATGTATCAAAGTGTCATAGAGCTTCTCGGATCTACAC AGATCGGAGTCTCTCTTCCTACAGTTGCTGCGTCGGAGAGGTCAAATACC GAGAGCGATACGGAGCCCCCTGCCGCGAATAGAACGGAAATCAACGAACG ACTCAATGCTGTCGACACTGGATTGTCAGGTTCTTTAACGGGTGACTCGA ATTGGACTGGCTCCCAAAAGACCCAGAATACCCGGAAGACACGAATTCCA GGGGAAGGCAGCGTTAGTAGCCGGACACGCAGTCGTACCAAGACTGTCCC TTAGATGTCGCCCAACACCGCAGACGACGCTCTTTCATATAATTTTCAGA AGGCATGCATTGATGGTAACCTTCGGGCAGTCCAGAGGGCTCTCGCCAGC GGAAGACTCTCTGCTAAGGATCTTGACACTGGACTAAGGATCAGTACTAA AGAGGCACATCCGGACATAGTAGCAGCTCTCTTTGAGGCAGGTGTGCCTA TGTCGCCAAATGCAATAGGCTGCCTCTGTGGGAATGATGCGAAACAGGAC CCGCGCGTCATTCGCCTCTACTTCGATCGTGGTCTGAAGCCTAGTGATTG TATTACGACTAAAGGCGAGCCTCTTTTACG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009473-T1.utr3p1 | KJC3_009473-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009473-T1.utr5p1 | KJC3_009473-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR020683 |
DBxref | InterPro:IPR036770 |
DBxref | InterPro:IPR002110 |
DBxref | PFAM:PF13606 |
DBxref | PFAM:PF00023 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch7 | supercontig | ch7:477820..479237 - |
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