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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:727829..731634+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009546-T1 ID=KJC3_009546-T1|Name=KJC3_009546-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3806bp|location=Sequence derived from alignment at ch7:727829..731634+ (Aspergillus niger KJC3) TTTACTAATACGACCCAACCGCCCTTCCGCGAAAGAACCCCAACCTGCGT
GGTCCAACATTGTAGCTTAGCGTGTCGTCAGCAATATGGCCATGAATAAA
CCGCTCTCAGATCTCCAAGCGACCGGATATAGGCTGCGCAAGTCACATGA
GAAGTCCCGTAATGGCTGCCTCAGATGCAAGCAGTTACGCAAGAAGGTAC
TACACGAAGCATATGCTGTGCTTCCATCCTATACGCTTCAGACCAATCAT
TCTGATTATATCGCCAGTGCGATGAAGCCAGACCGAAATGCTCACGTTGC
ACCAGACTCTCGTACACATGTCAATATCAACACCGTCCGAATACCAGCGA
ATCGGACACAGAGCCGACGGGTTTCCCGAACTCGGAGATTGAATTCGCTG
GATCCGAACTGACATCGAGGCGGCTCTCGAGCGATCGTCCATCGGGTCCT
ATCACTCCCTCCATTGGTCAACTTCCCCTTTCGCCACAATCAAATGGCGA
GGAAGATATACCCGGCTTAGACCTACCCTCCCCGGATCCTCTCAACGCGA
CCGAACTCAATCTCCTAGCTCATTATCTCTCGCACACTAGCCAAACGATC
CCATTCGATTCTCTCGATCTCTACGCTCTGGCTGTCGGAGTACCTAATCT
TGCCTTCAAATGCAAGGCTGTCATGTCATCCCTGCTAAGCCTGGCAGCAG
CATGCAAATGCCACGACATAGCAAATGAGAACACCCAAAGACCCCTCGAC
ACACGGACCTTAACAGAGATCAATGACCTCCTTGCGTTAGCCGAACGCCA
TCACGCGGCATCTCTCCGCCACATCCAAGCCACGATGCAAATAACCGAAT
CCTACGATAACGTCCTCGCCAATGCAGCATTGATGGTCTTGTACGCATCG
GCCAGCCACTCCATTCGTGTCCGTCTGGCAGCCACAGCTGAGAAATATGG
ACAGAGGCTGCCGAAAGAATTATTGCCGCAACATTCGCAGTGGATTTCGT
TCACACGCGCAGCGCATACCGCATCTAGTGCTATACTCCATGATATTGTT
AACGCTACTCCTTCCAGCAGCACGGTGGTGGATACGGGATCAGAGTCCCA
TGGAACAACATCAAGTCCTTCATCACCGCAAGGCGGTCCATCTCCGAAAA
CGAAGAGCTTATTCCTCCCGCTCGTTGCATCTACCTGTAATCGAGCTCTT
GGAAATCTTCGTAGGAGAGCAGAACGCACAACTGCAGAGCAGCGTTCCTC
TGCTTTATGTAGCGCGATTGGCCAGCGACGGGCTCACGCATTACTGGAAA
CCATAAATATCCTGGAGAGCTGTGCATCAGCAGCGCTATCGCCAGGGGCA
AGTGTTAAGAAGAAGGTTGTGTTCACAGCGTCTCCAAATACTCAGCACAC
CTCGATGTTTGGATGTCCCCGTGGTGTCTCACCATGGGTGGCTCGATACA
TGATCAGTGTCACGTCTATGGAGGCACCGCAAATTCTCCGACGTATCATT
ATGTCTTTTTTGAACAAGGCTCCGACCGAGTTTCTCAACATTGTGCGATC
GGTATTGGATTCTCCTACTGTAGAAGCTAGGAACGAGAGTACAACACTAC
CGGCTTCATCCGCAACCAGGGAGCCATTAATGGTCACTCCGATACATATC
CTGGCTATGGATATATTCGCTCATTGGCTGGTTTTAGTCATGTTATTGGA
TGGGGTGTGGTGGATCAGTAATATTGGACAGTGGGAGCTCAGCCAAGTCA
TCTCTTTGATGAAAACACAGAATGTCCTCTCCCAGTTGGCTGACAGTAGC
GAAATGTGGTGGCCCGAGAGTATGTACTTGGTTAAGCGAGAGCTCACGCC
CGATTCCTGGCATTAATAAGCGCGTGATTGTTATATCATAAAGTGGTCTG
GACATAGTTCTAAGCATCGTACAACATTATAACTGACCGGCCATCGAATA
TTTGGTAACAGCTGTCATGAATACCTGACACAGCTCACGCAATGCAGTAC
AGGAATCTGAACAGTCAGCTCAAGACAAGCATATCATGATTCCTACTCCC
AGTCCACAAATCGAACCCTAGTTAGCCACGCGCCATCTGGTCCGTTAGGC
TTCGAAAGCAGGATAACTTGGCGAGTACTTCGAAGGTTTTCTGCCTGCGT
ACACGAAATGACTGTCTCATATATACGGTCCCTGTCGACCGGAACTCTTT
CTTGTACGTCCAGCGATGACATATTGGCTTCTTCCAGTTCCATCACCAAT
TGAGCAATCTTAACTATAATATGTTTATTCCATAGACCCTCTTGTTTGGT
ACATCTGTTCATCTGCCGGATAGCCTCCCGACGGATGATCGGATCCCGGC
ACCTAATTGCTGTATAGTACAGCCCTGTAACAATACGTGTTTCGAGAGTG
AAGATATCCGGTGCGCAATTCGTTGACTTGCGGTCGGTGGCATCGTCAAG
ATCAATGACTTGACCGGCACAGTGGACGAGCTCCGCGAAAGCAGAATTAT
AGTTGTCGAAGACCGTTTCCTGTCTGGCCAGACATGTTTCCGTCCATATC
CAAGAGACAAGATACAACGAACGCAAGAAGAACAGACCTCGCCGGTCGCC
TTTTCGGGAGTTTTCTGCTTCATTTGCATAGTTTTCCAAGGCACTTCTCC
ATGTTTGAAATTCCTTCCTGAGCTCCGACTGTTGGGGCATCAAGTGTGTG
CGATCTGTGCGTTCGTGCCCTGCAGAACGGATGAACATGAGTGTCTTGTT
CATGAGCTTATAGAGTGCGTGTTGAGCCCAGTAAATATCCGACCAAACGG
GCCTTCCATCTGAGCGTTTCACTTCGGGATATGTTGGCTTAATATCAAGG
GCAACCATTGGCCGTCCGTTCATTGCGAGCTGGATGTTCAGTCGAAGACT
TAATTTCCATAACTCATGATAAGTCGCATTTAGTTTACTTCCTAGAGGTT
GCAGTCTTCCTATGACGCTCTGAACTATCTTCAGGCCCGCTTCGAGGTGG
TCCAGGGATTGCTTGTGATTACCATTCAGCATCTCCAAGCACACAAAAAG
AAAACATGTGATGACCAGAAGATCGATTCTAGGGTTTTGCGAAACAAGAT
AGGTTCTCAAATGTCGAATGGCCTCATTATAATGAAATATAATGAAGCGA
TCATTAGCGGCTCGGCGGTCCGCAGTGGATGATGGATTTCGCTGTAGCAC
AAGCGCCCGCTCATGGGCCGCGCTTACTGCCGCCGTGGCATGCCTGACGA
CAGGTTCACACTCGCTCAGTTGGGGGAGGTGGCGCATCCAGAGATCAGAC
TCAAATACCCCGGATAGCGCCCGAGCCGTCTGTGAGCTGAAGAAGTACAA
ATAATGTCGCTCCTTTTGTGTTCCTGGTCGAAGGACCATGCGATGGTCGA
CGGTCATCATTGGCTTACTGGGGACGACAGGCTGGTGGTTGTTCCCTGGA
CGTGATTCACTGTATCCATCGCACTTTCTCCCCGTGCGCTTGCACTGATA
GCATTCGGGCTTTTGTTCATCGCACTTGACATGTCGAATTCTGCATGATG
AGCTGGTTAGCCGGAAGATGCTTTTTAGGCGCCCAATGCTCCGGCTTGTA
CCTGCAAGTGGAACACCCTGTCCTCGATCTTGGTCCCGATGCTCTTCTTC
GCTTGGTCATCATCAATACAAGGTTTCCATAGGCGTATCATATGCCAAGC
CAGATGTAGATCTGAGAACAAGGAAAGCTTATTAGGTGGAAAGCGATCCA
AGCAACCCATGGCTCGCAGCCTCACCAGTCGCTTATCAGCCTGAGTGTCA
TCACCC back to topCoding sequence (CDS) from alignment at ch7:727829..731634+ >KJC3_009546-T1 ID=KJC3_009546-T1|Name=KJC3_009546-T1|organism=Aspergillus niger KJC3|type=CDS|length=3420bp|location=Sequence derived from alignment at ch7:727829..731634+ (Aspergillus niger KJC3) ATGGCCATGAATAAACCGCTCTCAGATCTCCAAGCGACCGGATATAGGCT GCGCAAGTCACATGAGAAGTCCCGTAATGGCTGCCTCAGATGCAAGCAGT TACGCAAGAAGTGCGATGAAGCCAGACCGAAATGCTCACGTTGCACCAGA CTCTCGTACACATGTCAATATCAACACCGTCCGAATACCAGCGAATCGGA CACAGAGCCGACGGGTTTCCCGAACTCGGAGATTGAATTCGCTGGATCCG AACTGACATCGAGGCGGCTCTCGAGCGATCGTCCATCGGGTCCTATCACT CCCTCCATTGGTCAACTTCCCCTTTCGCCACAATCAAATGGCGAGGAAGA TATACCCGGCTTAGACCTACCCTCCCCGGATCCTCTCAACGCGACCGAAC TCAATCTCCTAGCTCATTATCTCTCGCACACTAGCCAAACGATCCCATTC GATTCTCTCGATCTCTACGCTCTGGCTGTCGGAGTACCTAATCTTGCCTT CAAATGCAAGGCTGTCATGTCATCCCTGCTAAGCCTGGCAGCAGCATGCA AATGCCACGACATAGCAAATGAGAACACCCAAAGACCCCTCGACACACGG ACCTTAACAGAGATCAATGACCTCCTTGCGTTAGCCGAACGCCATCACGC GGCATCTCTCCGCCACATCCAAGCCACGATGCAAATAACCGAATCCTACG ATAACGTCCTCGCCAATGCAGCATTGATGGTCTTGTACGCATCGGCCAGC CACTCCATTCGTGTCCGTCTGGCAGCCACAGCTGAGAAATATGGACAGAG GCTGCCGAAAGAATTATTGCCGCAACATTCGCAGTGGATTTCGTTCACAC GCGCAGCGCATACCGCATCTAGTGCTATACTCCATGATATTGTTAACGCT ACTCCTTCCAGCAGCACGGTGGTGGATACGGGATCAGAGTCCCATGGAAC AACATCAAGTCCTTCATCACCGCAAGGCGGTCCATCTCCGAAAACGAAGA GCTTATTCCTCCCGCTCGTTGCATCTACCTGTAATCGAGCTCTTGGAAAT CTTCGTAGGAGAGCAGAACGCACAACTGCAGAGCAGCGTTCCTCTGCTTT ATGTAGCGCGATTGGCCAGCGACGGGCTCACGCATTACTGGAAACCATAA ATATCCTGGAGAGCTGTGCATCAGCAGCGCTATCGCCAGGGGCAAGTGTT AAGAAGAAGGTTGTGTTCACAGCGTCTCCAAATACTCAGCACACCTCGAT GTTTGGATGTCCCCGTGGTGTCTCACCATGGGTGGCTCGATACATGATCA GTGTCACGTCTATGGAGGCACCGCAAATTCTCCGACGTATCATTATGTCT TTTTTGAACAAGGCTCCGACCGAGTTTCTCAACATTGTGCGATCGGTATT GGATTCTCCTACTGTAGAAGCTAGGAACGAGAGTACAACACTACCGGCTT CATCCGCAACCAGGGAGCCATTAATGGTCACTCCGATACATATCCTGGCT ATGGATATATTCGCTCATTGGCTGGTTTTAGTCATGTTATTGGATGGGGT GTGGTGGATCAGTAATATTGGACAGTGGGAGCTCAGCCAAGTCATCTCTT TGATGAAAACACAGAATGTCCTCTCCCAGTTGGCTGACAGTAGCGAAATG TGGTGGCCCGAGAGTATGTACTTGGTTAAGCGAGAGCTCACGCCCGATTC CTGGCATTAAATGGCCATGAATAAACCGCTCTCAGATCTCCAAGCGACCG GATATAGGCTGCGCAAGTCACATGAGAAGTCCCGTAATGGCTGCCTCAGA TGCAAGCAGTTACGCAAGAAGTGCGATGAAGCCAGACCGAAATGCTCACG TTGCACCAGACTCTCGTACACATGTCAATATCAACACCGTCCGAATACCA GCGAATCGGACACAGAGCCGACGGGTTTCCCGAACTCGGAGATTGAATTC GCTGGATCCGAACTGACATCGAGGCGGCTCTCGAGCGATCGTCCATCGGG TCCTATCACTCCCTCCATTGGTCAACTTCCCCTTTCGCCACAATCAAATG GCGAGGAAGATATACCCGGCTTAGACCTACCCTCCCCGGATCCTCTCAAC GCGACCGAACTCAATCTCCTAGCTCATTATCTCTCGCACACTAGCCAAAC GATCCCATTCGATTCTCTCGATCTCTACGCTCTGGCTGTCGGAGTACCTA ATCTTGCCTTCAAATGCAAGGCTGTCATGTCATCCCTGCTAAGCCTGGCA GCAGCATGCAAATGCCACGACATAGCAAATGAGAACACCCAAAGACCCCT CGACACACGGACCTTAACAGAGATCAATGACCTCCTTGCGTTAGCCGAAC GCCATCACGCGGCATCTCTCCGCCACATCCAAGCCACGATGCAAATAACC GAATCCTACGATAACGTCCTCGCCAATGCAGCATTGATGGTCTTGTACGC ATCGGCCAGCCACTCCATTCGTGTCCGTCTGGCAGCCACAGCTGAGAAAT ATGGACAGAGGCTGCCGAAAGAATTATTGCCGCAACATTCGCAGTGGATT TCGTTCACACGCGCAGCGCATACCGCATCTAGTGCTATACTCCATGATAT TGTTAACGCTACTCCTTCCAGCAGCACGGTGGTGGATACGGGATCAGAGT CCCATGGAACAACATCAAGTCCTTCATCACCGCAAGGCGGTCCATCTCCG AAAACGAAGAGCTTATTCCTCCCGCTCGTTGCATCTACCTGTAATCGAGC TCTTGGAAATCTTCGTAGGAGAGCAGAACGCACAACTGCAGAGCAGCGTT CCTCTGCTTTATGTAGCGCGATTGGCCAGCGACGGGCTCACGCATTACTG GAAACCATAAATATCCTGGAGAGCTGTGCATCAGCAGCGCTATCGCCAGG GGCAAGTGTTAAGAAGAAGGTTGTGTTCACAGCGTCTCCAAATACTCAGC ACACCTCGATGTTTGGATGTCCCCGTGGTGTCTCACCATGGGTGGCTCGA TACATGATCAGTGTCACGTCTATGGAGGCACCGCAAATTCTCCGACGTAT CATTATGTCTTTTTTGAACAAGGCTCCGACCGAGTTTCTCAACATTGTGC GATCGGTATTGGATTCTCCTACTGTAGAAGCTAGGAACGAGAGTACAACA CTACCGGCTTCATCCGCAACCAGGGAGCCATTAATGGTCACTCCGATACA TATCCTGGCTATGGATATATTCGCTCATTGGCTGGTTTTAGTCATGTTAT TGGATGGGGTGTGGTGGATCAGTAATATTGGACAGTGGGAGCTCAGCCAA GTCATCTCTTTGATGAAAACACAGAATGTCCTCTCCCAGTTGGCTGACAG TAGCGAAATGTGGTGGCCCGAGAGTATGTACTTGGTTAAGCGAGAGCTCA CGCCCGATTCCTGGCATTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009546-T1.utr5p1 | KJC3_009546-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009546-T1.utr3p1 | KJC3_009546-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
Property Name | Value |
DBxref | InterPro:IPR036864 |
DBxref | InterPro:IPR001138 |
DBxref | PFAM:PF00172 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch7 | supercontig | ch7:727829..731634 + |
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