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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:765795..767902+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009562-T1 ID=KJC3_009562-T1|Name=KJC3_009562-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2108bp|location=Sequence derived from alignment at ch7:765795..767902+ (Aspergillus niger KJC3) CTTGTCCTCTGCCCATACAAGGATAATTTAAAAATCCGCACATATCCGGA
ATACAGTTTTGAAAGCTAACATCGACGCGGAGATGAGCCAACCTTCAGCT
GCGACTCGCCGCCATCGTAGGGGTATCGCCTGTGACGAGTGCCGACGCCG
GAAACTGCGCTGCGACGGACAGAAACCTCAATGTGGACGCTGTCTGGATA
CGGGAGTCGCTTGTGAGTTGACCCAGCGCAGTGCGCGAGGACCTAAAAAA
GGTCACTTGCGCGATCTGAAGAACCGACTCGTGTATCTGGAGGCCTTGCT
GGAGAACAGCGTGCCGGCAGAGGATACGCAACAGGATCTCCACGCCATTA
TCGAGTATACTGGTGATCCGTCGCTACTACCCTTGGTGAGGGCGGGCCAT
GCGGCTGAAGTTGGCACATCTGAGCCCTGGATTTCCGCGGGTACGGTGAC
CTCCAATTCAGAGCACGAGGGGCTTCTACAACACGACTTGACACCCGGTG
TACCTTCTTTCTCTCAACGGTCCTCCGTTGGCCCAATTATATCCGGCCAT
AGCACGCCGATACAGAGTATAACCGGTCTTATGCAGGACGAATTGTAAGC
ACCTCAATCAGGAATCAAAACACAATGCTAATTATGACTAGAGACCAGCT
TTACCTAGACCGTGTCCATAATTCTATCCCAATCCTCCATCAGCGACGGT
ACATGTCCTGGTCCAAATCTAGTACCAAAACGGAACCCCGTAGATGCTTA
CAGTATGCAATGTGGACACTAGCCGCATTGCTCTCCACCCAGTTCCGAGA
CATGATAGAACCGCTGTATCAGGAGACAAAGCGCATGCTCGACCAACTCA
CTGTTGCGGCAAATGAGGACAGTAATATTGACACCGAAATCGGCCAAGCC
TGGGTTCTTCTCGTGACCTTTGAGTCAATGCGCACATATCATCGACAGGC
ATGGATGAGCGCCGGGAGTGCGTTTCGCTTCGTGCAAGCCATGCACTATC
ATGAGCTCGACAGCCTAGATGGCAAAAGAGGCTCGGCTTATGCTCAGCGT
GATGACTTTATTGAGGTCGAGGAGAGACGTCGAGTGTTCTGGATGGCGTA
CTTTTTGGACCATATCATCAGTATGCGCGGCGACTGGCCAATCACTCTGA
ATGAGCATGTGGTAAGAATGATCCCAGCCCATTACTATATCCAGTTTTTG
TATTCAATTTTGTAGATCTGCACCCGTCTTCCAGCGTCGGATTCCAAATT
CCAGAACGGATATCGGGAACTAGGACCGTTCCTATCCGAAGCTATGACGG
ACTCAACCCTCCAAGTCCGATCGTCGTTCACCGAGTGCCTCATCCTCGTT
ACCATATGCGGTCGCAGTCTCTTCCAAAGACAACAGTGTCAAATATCCAA
GGCATACGGGGATATGACACTCGACTGGACGGAACAGCGGCAATGGCTGG
ACAGACTCCTCTTGAGCCGATTTCAGGTGCTTTCGCAGTGTTACCCGGAC
CCGACAGAATCCAATGACCACTTACTACTATTTACGCACATCTTAGCTCA
GGCTACTGTTATATACTACTGCAAAACTATGATCCAGTCGGACGCGCCAA
GCAACTTCACGCAGAACAGCGAATTCAGGTATGAGCATAGAGCCTTAGAA
GCGTCTAAGAATATCATCCGTCTGGCAACGACACTGCCCGAGCTGCCGTT
TTCTAAGGTAAGATCTTTTTCTTCAAAAAGCCCGGCTTTTAACAATTCCT
TTGTAGGTCCACCCTTTGATGCCCATGCCATTGTTCATTTGCGCCGAGTT
TCTCTACAGCAACATACACAATGGCATATCCGTCCAATCGCCCATCCAGG
ACTTGTTTCATATTTTCCGTGAGCTCAAGAATGTTAATAATCACGAGCAA
AGCTACCTGGATCTACTACCGCGATCATGTATTTCAAAAACAGCGGTGAT
GGTAGGGCTTGGTGATGAGGGGGGTGCGAGTAGTTAGATCACTTGTGATA
GCGTCGGTAATTCGTGATATCTTGCCCCAAATATCACTTCTTGACACGCT
ACAGTATAACAATTTTCTCTTGGGTGTCAGAAAGCCTCGGGCGATGAGCA
TTTCGTTC back to topCoding sequence (CDS) from alignment at ch7:765795..767902+ >KJC3_009562-T1 ID=KJC3_009562-T1|Name=KJC3_009562-T1|organism=Aspergillus niger KJC3|type=CDS|length=7020bp|location=Sequence derived from alignment at ch7:765795..767902+ (Aspergillus niger KJC3) ATGAGCCAACCTTCAGCTGCGACTCGCCGCCATCGTAGGGGTATCGCCTG TGACGAGTGCCGACGCCGGAAACTGCGCTGCGACGGACAGAAACCTCAAT GTGGACGCTGTCTGGATACGGGAGTCGCTTGTGAGTTGACCCAGCGCAGT GCGCGAGGACCTAAAAAAGGTCACTTGCGCGATCTGAAGAACCGACTCGT GTATCTGGAGGCCTTGCTGGAGAACAGCGTGCCGGCAGAGGATACGCAAC AGGATCTCCACGCCATTATCGAGTATACTGGTGATCCGTCGCTACTACCC TTGGTGAGGGCGGGCCATGCGGCTGAAGTTGGCACATCTGAGCCCTGGAT TTCCGCGGGTACGGTGACCTCCAATTCAGAGCACGAGGGGCTTCTACAAC ACGACTTGACACCCGGTGTACCTTCTTTCTCTCAACGGTCCTCCGTTGGC CCAATTATATCCGGCCATAGCACGCCGATACAGAGTATAACCGGTCTTAT GCAGGACGAATTAGACCAGCTTTACCTAGACCGTGTCCATAATTCTATCC CAATCCTCCATCAGCGACGGTACATGTCCTGGTCCAAATCTAGTACCAAA ACGGAACCCCGTAGATGCTTACAGTATGCAATGTGGACACTAGCCGCATT GCTCTCCACCCAGTTCCGAGACATGATAGAACCGCTGTATCAGGAGACAA AGCGCATGCTCGACCAACTCACTGTTGCGGCAAATGAGGACAGTAATATT GACACCGAAATCGGCCAAGCCTGGGTTCTTCTCGTGACCTTTGAGTCAAT GCGCACATATCATCGACAGGCATGGATGAGCGCCGGGAGTGCGTTTCGCT TCGTGCAAGCCATGCACTATCATGAGCTCGACAGCCTAGATGGCAAAAGA GGCTCGGCTTATGCTCAGCGTGATGACTTTATTGAGGTCGAGGAGAGACG TCGAGTGTTCTGGATGGCGTACTTTTTGGACCATATCATCAGTATGCGCG GCGACTGGCCAATCACTCTGAATGAGCATGTGATCTGCACCCGTCTTCCA GCGTCGGATTCCAAATTCCAGAACGGATATCGGGAACTAGGACCGTTCCT ATCCGAAGCTATGACGGACTCAACCCTCCAAGTCCGATCGTCGTTCACCG AGTGCCTCATCCTCGTTACCATATGCGGTCGCAGTCTCTTCCAAAGACAA CAGTGTCAAATATCCAAGGCATACGGGGATATGACACTCGACTGGACGGA ACAGCGGCAATGGCTGGACAGACTCCTCTTGAGCCGATTTCAGGTGCTTT CGCAGTGTTACCCGGACCCGACAGAATCCAATGACCACTTACTACTATTT ACGCACATCTTAGCTCAGGCTACTGTTATATACTACTGCAAAACTATGAT CCAGTCGGACGCGCCAAGCAACTTCACGCAGAACAGCGAATTCAGGTATG AGCATAGAGCCTTAGAAGCGTCTAAGAATATCATCCGTCTGGCAACGACA CTGCCCGAGCTGCCGTTTTCTAAGGTCCACCCTTTGATGCCCATGCCATT GTTCATTTGCGCCGAGTTTCTCTACAGCAACATACACAATGGCATATCCG TCCAATCGCCCATCCAGGACTTGTTTCATATTTTCCGTGAGCTCAAGAAT GTTAATAATCACGAGCAAAGCTACCTGGATCTACTACCGCGATCATGTAT TTCAAAAACAGCGGTGATGGTAGGGCTTGGTGATGAGGGGGGTGCGAGTA GTTAGATGAGCCAACCTTCAGCTGCGACTCGCCGCCATCGTAGGGGTATC GCCTGTGACGAGTGCCGACGCCGGAAACTGCGCTGCGACGGACAGAAACC TCAATGTGGACGCTGTCTGGATACGGGAGTCGCTTGTGAGTTGACCCAGC GCAGTGCGCGAGGACCTAAAAAAGGTCACTTGCGCGATCTGAAGAACCGA CTCGTGTATCTGGAGGCCTTGCTGGAGAACAGCGTGCCGGCAGAGGATAC GCAACAGGATCTCCACGCCATTATCGAGTATACTGGTGATCCGTCGCTAC TACCCTTGGTGAGGGCGGGCCATGCGGCTGAAGTTGGCACATCTGAGCCC TGGATTTCCGCGGGTACGGTGACCTCCAATTCAGAGCACGAGGGGCTTCT ACAACACGACTTGACACCCGGTGTACCTTCTTTCTCTCAACGGTCCTCCG TTGGCCCAATTATATCCGGCCATAGCACGCCGATACAGAGTATAACCGGT CTTATGCAGGACGAATTAGACCAGCTTTACCTAGACCGTGTCCATAATTC TATCCCAATCCTCCATCAGCGACGGTACATGTCCTGGTCCAAATCTAGTA CCAAAACGGAACCCCGTAGATGCTTACAGTATGCAATGTGGACACTAGCC GCATTGCTCTCCACCCAGTTCCGAGACATGATAGAACCGCTGTATCAGGA GACAAAGCGCATGCTCGACCAACTCACTGTTGCGGCAAATGAGGACAGTA ATATTGACACCGAAATCGGCCAAGCCTGGGTTCTTCTCGTGACCTTTGAG TCAATGCGCACATATCATCGACAGGCATGGATGAGCGCCGGGAGTGCGTT TCGCTTCGTGCAAGCCATGCACTATCATGAGCTCGACAGCCTAGATGGCA AAAGAGGCTCGGCTTATGCTCAGCGTGATGACTTTATTGAGGTCGAGGAG AGACGTCGAGTGTTCTGGATGGCGTACTTTTTGGACCATATCATCAGTAT GCGCGGCGACTGGCCAATCACTCTGAATGAGCATGTGATCTGCACCCGTC TTCCAGCGTCGGATTCCAAATTCCAGAACGGATATCGGGAACTAGGACCG TTCCTATCCGAAGCTATGACGGACTCAACCCTCCAAGTCCGATCGTCGTT CACCGAGTGCCTCATCCTCGTTACCATATGCGGTCGCAGTCTCTTCCAAA GACAACAGTGTCAAATATCCAAGGCATACGGGGATATGACACTCGACTGG ACGGAACAGCGGCAATGGCTGGACAGACTCCTCTTGAGCCGATTTCAGGT GCTTTCGCAGTGTTACCCGGACCCGACAGAATCCAATGACCACTTACTAC TATTTACGCACATCTTAGCTCAGGCTACTGTTATATACTACTGCAAAACT ATGATCCAGTCGGACGCGCCAAGCAACTTCACGCAGAACAGCGAATTCAG GTATGAGCATAGAGCCTTAGAAGCGTCTAAGAATATCATCCGTCTGGCAA CGACACTGCCCGAGCTGCCGTTTTCTAAGGTCCACCCTTTGATGCCCATG CCATTGTTCATTTGCGCCGAGTTTCTCTACAGCAACATACACAATGGCAT ATCCGTCCAATCGCCCATCCAGGACTTGTTTCATATTTTCCGTGAGCTCA AGAATGTTAATAATCACGAGCAAAGCTACCTGGATCTACTACCGCGATCA TGTATTTCAAAAACAGCGGTGATGGTAGGGCTTGGTGATGAGGGGGGTGC GAGTAGTTAGATGAGCCAACCTTCAGCTGCGACTCGCCGCCATCGTAGGG GTATCGCCTGTGACGAGTGCCGACGCCGGAAACTGCGCTGCGACGGACAG AAACCTCAATGTGGACGCTGTCTGGATACGGGAGTCGCTTGTGAGTTGAC CCAGCGCAGTGCGCGAGGACCTAAAAAAGGTCACTTGCGCGATCTGAAGA ACCGACTCGTGTATCTGGAGGCCTTGCTGGAGAACAGCGTGCCGGCAGAG GATACGCAACAGGATCTCCACGCCATTATCGAGTATACTGGTGATCCGTC GCTACTACCCTTGGTGAGGGCGGGCCATGCGGCTGAAGTTGGCACATCTG AGCCCTGGATTTCCGCGGGTACGGTGACCTCCAATTCAGAGCACGAGGGG CTTCTACAACACGACTTGACACCCGGTGTACCTTCTTTCTCTCAACGGTC CTCCGTTGGCCCAATTATATCCGGCCATAGCACGCCGATACAGAGTATAA CCGGTCTTATGCAGGACGAATTAGACCAGCTTTACCTAGACCGTGTCCAT AATTCTATCCCAATCCTCCATCAGCGACGGTACATGTCCTGGTCCAAATC TAGTACCAAAACGGAACCCCGTAGATGCTTACAGTATGCAATGTGGACAC TAGCCGCATTGCTCTCCACCCAGTTCCGAGACATGATAGAACCGCTGTAT CAGGAGACAAAGCGCATGCTCGACCAACTCACTGTTGCGGCAAATGAGGA CAGTAATATTGACACCGAAATCGGCCAAGCCTGGGTTCTTCTCGTGACCT TTGAGTCAATGCGCACATATCATCGACAGGCATGGATGAGCGCCGGGAGT GCGTTTCGCTTCGTGCAAGCCATGCACTATCATGAGCTCGACAGCCTAGA TGGCAAAAGAGGCTCGGCTTATGCTCAGCGTGATGACTTTATTGAGGTCG AGGAGAGACGTCGAGTGTTCTGGATGGCGTACTTTTTGGACCATATCATC AGTATGCGCGGCGACTGGCCAATCACTCTGAATGAGCATGTGATCTGCAC CCGTCTTCCAGCGTCGGATTCCAAATTCCAGAACGGATATCGGGAACTAG GACCGTTCCTATCCGAAGCTATGACGGACTCAACCCTCCAAGTCCGATCG TCGTTCACCGAGTGCCTCATCCTCGTTACCATATGCGGTCGCAGTCTCTT CCAAAGACAACAGTGTCAAATATCCAAGGCATACGGGGATATGACACTCG ACTGGACGGAACAGCGGCAATGGCTGGACAGACTCCTCTTGAGCCGATTT CAGGTGCTTTCGCAGTGTTACCCGGACCCGACAGAATCCAATGACCACTT ACTACTATTTACGCACATCTTAGCTCAGGCTACTGTTATATACTACTGCA AAACTATGATCCAGTCGGACGCGCCAAGCAACTTCACGCAGAACAGCGAA TTCAGGTATGAGCATAGAGCCTTAGAAGCGTCTAAGAATATCATCCGTCT GGCAACGACACTGCCCGAGCTGCCGTTTTCTAAGGTCCACCCTTTGATGC CCATGCCATTGTTCATTTGCGCCGAGTTTCTCTACAGCAACATACACAAT GGCATATCCGTCCAATCGCCCATCCAGGACTTGTTTCATATTTTCCGTGA GCTCAAGAATGTTAATAATCACGAGCAAAGCTACCTGGATCTACTACCGC GATCATGTATTTCAAAAACAGCGGTGATGGTAGGGCTTGGTGATGAGGGG GGTGCGAGTAGTTAGATGAGCCAACCTTCAGCTGCGACTCGCCGCCATCG TAGGGGTATCGCCTGTGACGAGTGCCGACGCCGGAAACTGCGCTGCGACG GACAGAAACCTCAATGTGGACGCTGTCTGGATACGGGAGTCGCTTGTGAG TTGACCCAGCGCAGTGCGCGAGGACCTAAAAAAGGTCACTTGCGCGATCT GAAGAACCGACTCGTGTATCTGGAGGCCTTGCTGGAGAACAGCGTGCCGG CAGAGGATACGCAACAGGATCTCCACGCCATTATCGAGTATACTGGTGAT CCGTCGCTACTACCCTTGGTGAGGGCGGGCCATGCGGCTGAAGTTGGCAC ATCTGAGCCCTGGATTTCCGCGGGTACGGTGACCTCCAATTCAGAGCACG AGGGGCTTCTACAACACGACTTGACACCCGGTGTACCTTCTTTCTCTCAA CGGTCCTCCGTTGGCCCAATTATATCCGGCCATAGCACGCCGATACAGAG TATAACCGGTCTTATGCAGGACGAATTAGACCAGCTTTACCTAGACCGTG TCCATAATTCTATCCCAATCCTCCATCAGCGACGGTACATGTCCTGGTCC AAATCTAGTACCAAAACGGAACCCCGTAGATGCTTACAGTATGCAATGTG GACACTAGCCGCATTGCTCTCCACCCAGTTCCGAGACATGATAGAACCGC TGTATCAGGAGACAAAGCGCATGCTCGACCAACTCACTGTTGCGGCAAAT GAGGACAGTAATATTGACACCGAAATCGGCCAAGCCTGGGTTCTTCTCGT GACCTTTGAGTCAATGCGCACATATCATCGACAGGCATGGATGAGCGCCG GGAGTGCGTTTCGCTTCGTGCAAGCCATGCACTATCATGAGCTCGACAGC CTAGATGGCAAAAGAGGCTCGGCTTATGCTCAGCGTGATGACTTTATTGA GGTCGAGGAGAGACGTCGAGTGTTCTGGATGGCGTACTTTTTGGACCATA TCATCAGTATGCGCGGCGACTGGCCAATCACTCTGAATGAGCATGTGATC TGCACCCGTCTTCCAGCGTCGGATTCCAAATTCCAGAACGGATATCGGGA ACTAGGACCGTTCCTATCCGAAGCTATGACGGACTCAACCCTCCAAGTCC GATCGTCGTTCACCGAGTGCCTCATCCTCGTTACCATATGCGGTCGCAGT CTCTTCCAAAGACAACAGTGTCAAATATCCAAGGCATACGGGGATATGAC ACTCGACTGGACGGAACAGCGGCAATGGCTGGACAGACTCCTCTTGAGCC GATTTCAGGTGCTTTCGCAGTGTTACCCGGACCCGACAGAATCCAATGAC CACTTACTACTATTTACGCACATCTTAGCTCAGGCTACTGTTATATACTA CTGCAAAACTATGATCCAGTCGGACGCGCCAAGCAACTTCACGCAGAACA GCGAATTCAGGTATGAGCATAGAGCCTTAGAAGCGTCTAAGAATATCATC CGTCTGGCAACGACACTGCCCGAGCTGCCGTTTTCTAAGGTCCACCCTTT GATGCCCATGCCATTGTTCATTTGCGCCGAGTTTCTCTACAGCAACATAC ACAATGGCATATCCGTCCAATCGCCCATCCAGGACTTGTTTCATATTTTC CGTGAGCTCAAGAATGTTAATAATCACGAGCAAAGCTACCTGGATCTACT ACCGCGATCATGTATTTCAAAAACAGCGGTGATGGTAGGGCTTGGTGATG AGGGGGGTGCGAGTAGTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
Term | Definition |
GO:0006351 | transcription, DNA-templated |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
GO:0008270 | zinc ion binding |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009562-T1.utr5p1 | KJC3_009562-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009562-T1.utr3p1 | KJC3_009562-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR036864 |
DBxref | InterPro:IPR007219 |
DBxref | InterPro:IPR001138 |
DBxref | PFAM:PF00172 |
DBxref | PFAM:PF04082 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch7 | supercontig | ch7:765795..767902 + |
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