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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:847944..850315+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009591-T2 ID=KJC3_009591-T2|Name=KJC3_009591-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2372bp|location=Sequence derived from alignment at ch7:847944..850315+ (Aspergillus niger KJC3) CTTCTGTTTATTCCTCTTCTCCCTCCTCTTCTCCTCTCTCCCCCCCTGAT
TTTCCCTCTCCTCCCAATTGTTTACTTATTTCCTCTTCCTCTACATCTCT
CTCTAACCCCCTCTCCCTCCTCTACCTCCTCCTCCGCCTCCCTCCTACTC
CTACATTCCTCTGTCTGCTTGACTGGATTCCCCGTCTCCTCCCCGCTCAT
CCTCCCCAGCCAGTGAGGCATTCGCTCGCTGTGCTTGTACATTATTGTAC
CATCCCATCCCTTTCTTTTCCTCTCGAATTCCGTTGATTCGGTCATTCTC
CCGCATTGCTTCCCTCTGCTTTCCATTCCCTTTCTTATTACGTGTAATAA
TTCCCCATTTTACCCTAATTCTTCTATTTCGTCATTTTTGACCGTTCGAT
CGTAATCTACCCTCCACCATGGGTCTCGCATCGAATGCCATCTACTACAC
CTTTCATCCCTCGGAACTGAGGTCGATTTTGCAATGGTTGGTTCCGGCCC
TTGTCCTCGACCGGCTATGATGGGCTTTAGTGTGTTGTGCCAACGCTTAC
GAAGGCTTTGCCCGTGGTCATAGGAAGATCTGGCACTCCCCGGTTCATGA
GCGCAATGAGAAGAACGAAACCGAGACTGAGAAGGCCTGCTTCAAATTCC
TCGACCTGACCAGTCGGAGCTTCAGCGCCGTCATCAAGGAGCTCCACCCG
GAGCTGTTGATGCCCGTCTGCGTCTTCTACCTCACACTTCGCGGGCTGGA
CACCATCGAAGATGACACGTCGATTCCTTTGGAAACAAAGGAACCCCTGC
TGCGTGGCTTCAAGGACTTCCTGGAACAGGATGGCTGGACGTTTAATGGC
AACCGCCCCGAAGAGAAGGACCGTGAGCTGCTGGTTCAGTTTCACAATGT
CATCACCGAGTTCAAGAAGATGAAGCCCGCCTACCAGGCCATCATCAAGG
ACATCACTGACAAGATGGGCAACGGTATGGCCGATTACTGTCGCAAGGCG
GCCTTCGATGACGCCAGCGTGATCACCGTCGAGGAATACGACCTGTACTG
CTACTACGTCGCCGGCTTGGTTGGTGAAGGACTGACGCGCCTCTTCGTCG
AGGCCGAGTTTGGTAACCCTGCCCTGCTGGAACGCGCGCGTCTGCACAAG
TCCATGGGACTCTTCCTCCAAAAGACAAACATCATCCGAGACATCCGAGA
GGACGACGATGATGGACGTCGCTTCTGGCCCAAAGAGATTTGGTCCAAGC
ACGTCAAGCAGTTCGATGATCTGTTCAAGCCCGAGCACCGCGAAGCTGCA
CTGAACTGCAGCTCCGAGATGGTGTTGAACGCTTTGGAACATGTTGAAGA
CTGCCTGTTTTACCTGGCTGGCCTGCGTGAGCAGAGTGTGTTTAACTTCT
GCGCGATCCCGCAATCGATGGCCATTGCCACGCTGGAGCTCTGCTTCCGC
AACCCCGCGATCTTCGAGCGTAACATCAAGATCACCAAGGGTGAGGCGTG
CCAGCTGATGTTCGAGTCGACGCAGAACCTGCGTATCCTCTGTGCTGCCT
TCCGCAAGTACGCGCGCAAGATTCACAAGAAGAACACACCCAAGGACCCT
AACTTCCTCAAGGTCAGCCTTGTTTGTGGACGGGTATGTTTTTTTATTCC
CCTCTGCTCTGGTTGGGCTGCGCTAATGATTATAGATTGAAAAATGGATC
GAGACCATCTTCCCATCTCAGAATGCCGAGGCCGCCAAGCGTCGTGTCAC
TGGCGAGCTGACGGAACAGGAGAAGAAGCAGGCCGAGGAGCACGCCGAGA
CTCGGAAGGACATGTACTTTATGATGGGTCTCATGGTGGTGATTGTGTTC
ATCACCTCGGTCGTTATGGTATGTGCCTTCACCTGACATCTAATTGAATT
TGGCTAACCCGAATAGATCTTCACTGCCTGGCTACTGGGTGCGCGATTCG
ACTTGGCGTGGCAGGAGCTGCGGTCCGGTAACTTCCGGCCACCAAGAGAA
ATTCGCCAAAAGCAAGAGCTGTAATGCATTCTACGGAGTTATGACTGATT
GATCTACTAGCTGCGGAGGCTTATGTCTTATACCTTTCTGCCCACCGCTT
ATTTACTAATACATTACCCTTCTTTCTTCTTCCTTTCTTAGGTCTATATT
TCTGGACGATGAACTAGCACGGATGTCAAATTGCGATCCAGTCTTTCCAT
GACTGTGGTTGTGCCGAAGAAGTGCTGATATTGAGCTGAATATTCTGACC
AGCGACGTACTAGATGTGTGTCTTACAACTTAAGTGTTGAGGTGGCAAAC
ATCCATTGAGGACCTGGAACAAATGTAGTCATGTAAACGTCAATTTATAT
GTTACCACTTGAACAATATGAC back to topCoding sequence (CDS) from alignment at ch7:847944..850315+ >KJC3_009591-T2 ID=KJC3_009591-T2|Name=KJC3_009591-T2|organism=Aspergillus niger KJC3|type=CDS|length=3645bp|location=Sequence derived from alignment at ch7:847944..850315+ (Aspergillus niger KJC3) ATGCCCGTCTGCGTCTTCTACCTCACACTTCGCGGGCTGGACACCATCGA AGATGACACGTCGATTCCTTTGGAAACAAAGGAACCCCTGCTGCGTGGCT TCAAGGACTTCCTGGAACAGGATGGCTGGACGTTTAATGGCAACCGCCCC GAAGAGAAGGACCGTGAGCTGCTGGTTCAGTTTCACAATGTCATCACCGA GTTCAAGAAGATGAAGCCCGCCTACCAGGCCATCATCAAGGACATCACTG ACAAGATGGGCAACGGTATGGCCGATTACTGTCGCAAGGCGGCCTTCGAT GACGCCAGCGTGATCACCGTCGAGGAATACGACCTGTACTGCTACTACGT CGCCGGCTTGGTTGGTGAAGGACTGACGCGCCTCTTCGTCGAGGCCGAGT TTGGTAACCCTGCCCTGCTGGAACGCGCGCGTCTGCACAAGTCCATGGGA CTCTTCCTCCAAAAGACAAACATCATCCGAGACATCCGAGAGGACGACGA TGATGGACGTCGCTTCTGGCCCAAAGAGATTTGGTCCAAGCACGTCAAGC AGTTCGATGATCTGTTCAAGCCCGAGCACCGCGAAGCTGCACTGAACTGC AGCTCCGAGATGGTGTTGAACGCTTTGGAACATGTTGAAGACTGCCTGTT TTACCTGGCTGGCCTGCGTGAGCAGAGTGTGTTTAACTTCTGCGCGATCC CGCAATCGATGGCCATTGCCACGCTGGAGCTCTGCTTCCGCAACCCCGCG ATCTTCGAGCGTAACATCAAGATCACCAAGGGTGAGGCGTGCCAGCTGAT GTTCGAGTCGACGCAGAACCTGCGTATCCTCTGTGCTGCCTTCCGCAAGT ACGCGCGCAAGATTCACAAGAAGAACACACCCAAGGACCCTAACTTCCTC AAGGTCAGCCTTGTTTGTGGACGGATTGAAAAATGGATCGAGACCATCTT CCCATCTCAGAATGCCGAGGCCGCCAAGCGTCGTGTCACTGGCGAGCTGA CGGAACAGGAGAAGAAGCAGGCCGAGGAGCACGCCGAGACTCGGAAGGAC ATGTACTTTATGATGGGTCTCATGGTGGTGATTGTGTTCATCACCTCGGT CGTTATGATCTTCACTGCCTGGCTACTGGGTGCGCGATTCGACTTGGCGT GGCAGGAGCTGCGGTCCGGTAACTTCCGGCCACCAAGAGAAATTCGCCAA AAGCAAGAGCTGTAAATGCCCGTCTGCGTCTTCTACCTCACACTTCGCGG GCTGGACACCATCGAAGATGACACGTCGATTCCTTTGGAAACAAAGGAAC CCCTGCTGCGTGGCTTCAAGGACTTCCTGGAACAGGATGGCTGGACGTTT AATGGCAACCGCCCCGAAGAGAAGGACCGTGAGCTGCTGGTTCAGTTTCA CAATGTCATCACCGAGTTCAAGAAGATGAAGCCCGCCTACCAGGCCATCA TCAAGGACATCACTGACAAGATGGGCAACGGTATGGCCGATTACTGTCGC AAGGCGGCCTTCGATGACGCCAGCGTGATCACCGTCGAGGAATACGACCT GTACTGCTACTACGTCGCCGGCTTGGTTGGTGAAGGACTGACGCGCCTCT TCGTCGAGGCCGAGTTTGGTAACCCTGCCCTGCTGGAACGCGCGCGTCTG CACAAGTCCATGGGACTCTTCCTCCAAAAGACAAACATCATCCGAGACAT CCGAGAGGACGACGATGATGGACGTCGCTTCTGGCCCAAAGAGATTTGGT CCAAGCACGTCAAGCAGTTCGATGATCTGTTCAAGCCCGAGCACCGCGAA GCTGCACTGAACTGCAGCTCCGAGATGGTGTTGAACGCTTTGGAACATGT TGAAGACTGCCTGTTTTACCTGGCTGGCCTGCGTGAGCAGAGTGTGTTTA ACTTCTGCGCGATCCCGCAATCGATGGCCATTGCCACGCTGGAGCTCTGC TTCCGCAACCCCGCGATCTTCGAGCGTAACATCAAGATCACCAAGGGTGA GGCGTGCCAGCTGATGTTCGAGTCGACGCAGAACCTGCGTATCCTCTGTG CTGCCTTCCGCAAGTACGCGCGCAAGATTCACAAGAAGAACACACCCAAG GACCCTAACTTCCTCAAGGTCAGCCTTGTTTGTGGACGGATTGAAAAATG GATCGAGACCATCTTCCCATCTCAGAATGCCGAGGCCGCCAAGCGTCGTG TCACTGGCGAGCTGACGGAACAGGAGAAGAAGCAGGCCGAGGAGCACGCC GAGACTCGGAAGGACATGTACTTTATGATGGGTCTCATGGTGGTGATTGT GTTCATCACCTCGGTCGTTATGATCTTCACTGCCTGGCTACTGGGTGCGC GATTCGACTTGGCGTGGCAGGAGCTGCGGTCCGGTAACTTCCGGCCACCA AGAGAAATTCGCCAAAAGCAAGAGCTGTAAATGCCCGTCTGCGTCTTCTA CCTCACACTTCGCGGGCTGGACACCATCGAAGATGACACGTCGATTCCTT TGGAAACAAAGGAACCCCTGCTGCGTGGCTTCAAGGACTTCCTGGAACAG GATGGCTGGACGTTTAATGGCAACCGCCCCGAAGAGAAGGACCGTGAGCT GCTGGTTCAGTTTCACAATGTCATCACCGAGTTCAAGAAGATGAAGCCCG CCTACCAGGCCATCATCAAGGACATCACTGACAAGATGGGCAACGGTATG GCCGATTACTGTCGCAAGGCGGCCTTCGATGACGCCAGCGTGATCACCGT CGAGGAATACGACCTGTACTGCTACTACGTCGCCGGCTTGGTTGGTGAAG GACTGACGCGCCTCTTCGTCGAGGCCGAGTTTGGTAACCCTGCCCTGCTG GAACGCGCGCGTCTGCACAAGTCCATGGGACTCTTCCTCCAAAAGACAAA CATCATCCGAGACATCCGAGAGGACGACGATGATGGACGTCGCTTCTGGC CCAAAGAGATTTGGTCCAAGCACGTCAAGCAGTTCGATGATCTGTTCAAG CCCGAGCACCGCGAAGCTGCACTGAACTGCAGCTCCGAGATGGTGTTGAA CGCTTTGGAACATGTTGAAGACTGCCTGTTTTACCTGGCTGGCCTGCGTG AGCAGAGTGTGTTTAACTTCTGCGCGATCCCGCAATCGATGGCCATTGCC ACGCTGGAGCTCTGCTTCCGCAACCCCGCGATCTTCGAGCGTAACATCAA GATCACCAAGGGTGAGGCGTGCCAGCTGATGTTCGAGTCGACGCAGAACC TGCGTATCCTCTGTGCTGCCTTCCGCAAGTACGCGCGCAAGATTCACAAG AAGAACACACCCAAGGACCCTAACTTCCTCAAGGTCAGCCTTGTTTGTGG ACGGATTGAAAAATGGATCGAGACCATCTTCCCATCTCAGAATGCCGAGG CCGCCAAGCGTCGTGTCACTGGCGAGCTGACGGAACAGGAGAAGAAGCAG GCCGAGGAGCACGCCGAGACTCGGAAGGACATGTACTTTATGATGGGTCT CATGGTGGTGATTGTGTTCATCACCTCGGTCGTTATGATCTTCACTGCCT GGCTACTGGGTGCGCGATTCGACTTGGCGTGGCAGGAGCTGCGGTCCGGT AACTTCCGGCCACCAAGAGAAATTCGCCAAAAGCAAGAGCTGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
Term | Definition |
GO:0051996 | squalene synthase activity |
GO:0004310 | farnesyl-diphosphate farnesyltransferase activity |
GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups |
GO:0016740 | transferase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0009058 | biosynthetic process |
GO:0008610 | lipid biosynthetic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_009591-T2.utr3p1 | KJC3_009591-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
Note | antiSMASH:Cluster_7.6 |
DBxref | InterPro:IPR033904 |
DBxref | InterPro:IPR019845 |
DBxref | InterPro:IPR002060 |
DBxref | InterPro:IPR006449 |
DBxref | InterPro:IPR008949 |
DBxref | PFAM:PF00494 |
Product | variant 2 |
Product | Delta(24)-sterol C-methyltransferase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch7 | supercontig | ch7:847944..850315 + |
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