|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:902300..903693+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009607-T1 ID=KJC3_009607-T1|Name=KJC3_009607-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1394bp|location=Sequence derived from alignment at ch7:902300..903693+ (Aspergillus niger KJC3)
CATCAAGTTGTGTATACACAATGTCACTATTGGCCCTACCCACCGAATTA
TTACAGCAGGTCGCTGCACTCCTCCCGGATGGACATCTCTCCAGTCTACT
GCAGGTGAACCTCCATCTATACGATGTACTGCTTCCATGTCTCTACCAAC
GGCGTCACAAGTCTCGAGACTTTGCACGTAGCTGGCCAGCAGGTTTCATG
CGAGCCATTGCGACTGGGAATGTCCAAGGCACACAGAACTTCCTCCACTA
CGGCGCCGACGTGAACCTCGTATGCAGTCATCACTTTCTGCATCAAGCAA
AAGTCCCTATTGAGCCCTGGTTTGATTTGCAGACGCCGCTTAACGTGGCA
GCGAGCATCGGGAATGACACGTTGGTAATGATGTTGCTAGGTCACGGGGC
TGAAATCAACGGATTGAAGCACCATGATGGGGTTCGCTTTAGACACACCC
AGCCAGCTATCGCGGATGCTCTATTATCAGGACATATAAGTACTGTTCGA
CTCCTGCTTGAACATGGCTCAGATATCCAAGACTGCCATATAGAGGCTGG
TCGGCTAGTCCTCTACGCCGTTAATACAGGCCAGTTAACGATGCTCCAGC
TCCTGAAGGAGTTCGGAGCTGATCTAAACATCGCTTATAATCACGTGGAA
CCCCTACACAAGGCAGCCTGCTTGCGACAAATATCGACTGATATAGTACG
GTTCCTGCTTGACCATGGCGCGGAAATCACCTCTTCTGATCGTCGTCATA
GACGGTTTATGGAAGATGTGATGAGAGGAGGGACCATCGATACTGCCCGG
CTTCTGCTAGAACGCGGAGCGGTATTTCCCCAGGATGGATTTCATTCGGC
TATTGCCTGCGGAACGCCTGACTTTATCCGCCTGCTCATTGAATATGGTC
ACAAGCCTGATATCGAGTGGCTCAAGTGGGCTATTAGGAGTCGGCGGCTC
GATCTATTGCAGCTACTTCTTGAAGAGGGCGTTGGTCTCTATTCCAGGGA
CGCTAGAGGATCCACAATCCTGCATTATGCGGTAAAGTGGTGCAGCTATG
AAAGCCCCACACATGGAATGTCGCAAGCGATATGCGGGATTCCTGCACAG
ACGCCACTTGTGCGCCGTATCAAAAACATCGAGCCTCAAACGGTATCACG
TCCATGTAGTATCCAGGGCACCTCTAGGGGTACTTCGGAAGACATCCTGC
GCTATGTCATTCATAGAGGGGCGGAGATCAATGCCTTGGATGGTAATGGT
CGGACCCCGCTCGATATAGCTAGGAAATACGCTCCGAAGGTGGAGCAGAT
ACTTGTAGATAGCGGTGCTACATCCCATAGCAACTTCCAAGGAGGAAGAG
AAAGTGGATAACCGGGTGAATTCAATAACTATATTTGGCGAGGC back to topCoding sequence (CDS) from alignment at ch7:902300..903693+ >KJC3_009607-T1 ID=KJC3_009607-T1|Name=KJC3_009607-T1|organism=Aspergillus niger KJC3|type=CDS|length=1341bp|location=Sequence derived from alignment at ch7:902300..903693+ (Aspergillus niger KJC3)
ATGTCACTATTGGCCCTACCCACCGAATTATTACAGCAGGTCGCTGCACT
CCTCCCGGATGGACATCTCTCCAGTCTACTGCAGGTGAACCTCCATCTAT
ACGATGTACTGCTTCCATGTCTCTACCAACGGCGTCACAAGTCTCGAGAC
TTTGCACGTAGCTGGCCAGCAGGTTTCATGCGAGCCATTGCGACTGGGAA
TGTCCAAGGCACACAGAACTTCCTCCACTACGGCGCCGACGTGAACCTCG
TATGCAGTCATCACTTTCTGCATCAAGCAAAAGTCCCTATTGAGCCCTGG
TTTGATTTGCAGACGCCGCTTAACGTGGCAGCGAGCATCGGGAATGACAC
GTTGGTAATGATGTTGCTAGGTCACGGGGCTGAAATCAACGGATTGAAGC
ACCATGATGGGGTTCGCTTTAGACACACCCAGCCAGCTATCGCGGATGCT
CTATTATCAGGACATATAAGTACTGTTCGACTCCTGCTTGAACATGGCTC
AGATATCCAAGACTGCCATATAGAGGCTGGTCGGCTAGTCCTCTACGCCG
TTAATACAGGCCAGTTAACGATGCTCCAGCTCCTGAAGGAGTTCGGAGCT
GATCTAAACATCGCTTATAATCACGTGGAACCCCTACACAAGGCAGCCTG
CTTGCGACAAATATCGACTGATATAGTACGGTTCCTGCTTGACCATGGCG
CGGAAATCACCTCTTCTGATCGTCGTCATAGACGGTTTATGGAAGATGTG
ATGAGAGGAGGGACCATCGATACTGCCCGGCTTCTGCTAGAACGCGGAGC
GGTATTTCCCCAGGATGGATTTCATTCGGCTATTGCCTGCGGAACGCCTG
ACTTTATCCGCCTGCTCATTGAATATGGTCACAAGCCTGATATCGAGTGG
CTCAAGTGGGCTATTAGGAGTCGGCGGCTCGATCTATTGCAGCTACTTCT
TGAAGAGGGCGTTGGTCTCTATTCCAGGGACGCTAGAGGATCCACAATCC
TGCATTATGCGGTAAAGTGGTGCAGCTATGAAAGCCCCACACATGGAATG
TCGCAAGCGATATGCGGGATTCCTGCACAGACGCCACTTGTGCGCCGTAT
CAAAAACATCGAGCCTCAAACGGTATCACGTCCATGTAGTATCCAGGGCA
CCTCTAGGGGTACTTCGGAAGACATCCTGCGCTATGTCATTCATAGAGGG
GCGGAGATCAATGCCTTGGATGGTAATGGTCGGACCCCGCTCGATATAGC
TAGGAAATACGCTCCGAAGGTGGAGCAGATACTTGTAGATAGCGGTGCTA
CATCCCATAGCAACTTCCAAGGAGGAAGAGAAAGTGGATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009607-T1.utr5p1 | KJC3_009607-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009607-T1.utr3p1 | KJC3_009607-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13637 |
| DBxref | PFAM:PF12796 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:902300..903693 + |
|
