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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:970644..971838+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009637-T1 ID=KJC3_009637-T1|Name=KJC3_009637-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1195bp|location=Sequence derived from alignment at ch7:970644..971838+ (Aspergillus niger KJC3)
TTCTTATCGGCGGTCTGGGGTTCTGATCCAATTACTTGAAGTTATCAGAG
CTCCCCTTTGGGCCCTCTTCTGCTCTTCTCCAACTATTTACAAATCTGGG
GCACTGGGATTGTTGTCTTCATCCCCTATTATTTGCATTAATTAGTCTCA
TTAAATATATAGTCGTATTTATTCTTTGATAATGCTCCGGTGGTATGTCC
TTGTCCATCCTGATGATCAATATTTCCATCGCTGATCAGGCACAGGTATC
AGGCGAGGTTGGCCAAGCAGCCTATCCTCACTGCTAGTGTGACGAGTGCT
GTAAGAATTCCCATTCTTCTTTCTTACAGATCATTCATTCATTTACTGTC
GTATTTTCTATTATCTGATGTCAACCCCGACATAATACCAATTTGAGCTG
ACCTTTATTTCCCATGCGGACTAGCTGTTGTTTGGTAGTGGAGATGTTCT
AGCCCAACAACTAGTCGATCGTAAGGGATTTGATAAGCACGATCTGGCAA
GAACGGGACGCATGGCCCTTTATGGTGGAGGTGAGCTACCATATAATCCC
TTGTCAATCTGGGATCTTCTTTCTGCCCTTGGAAGTCCTGGGAAAGCCTT
CCTCCATACAATGGGAAGTGGTCAAGCTAACATATAACAGCGATCTTCGG
GCCGGCTGCTACCACCTGGTACGGTGTCCTCCAGCGTCACGTCGTCCTGA
ATAACGCCAAAACTACCCTCATTGCCCGTGTCATCGCGGATCAATGTGTC
TTTACTCCCGCACACCTTACTTGTTTCTTGTCCTCCATGGCTATCATGGA
AGGCACCGATCCGATTGAGAAGTGGCGCAATGGTTTCGTTCCCAGCTTCA
AAGCAAACCTTGCGATTTGGCCTCTCGTTCAAGGAGTCAACTTTGCCATC
GTGCCACTTGAGTACCGCGTGCTTTTTGTCAACCTAGTCGCTTTGGGTGA
GTATTCCGGCCTTCTACTAATATCGAATGATGCTGACGCCATTAGGCTGG
AACTGTTTGTTGAGCTTGATTAACAGCGGTGAGAAGTGATTTTGATTTTC
AATACCCTGTCTATTGTAGACACTCTTTGCAGATATCCCTACACTGTCCA
TAGATACTAGATGTTTTTATTCGGTCCAATTGTTTATCTTTTGAATTCTG
ATATCTACGGCATTTTGCATGTTATATAGACTAATTAGTTTAAGG back to topCoding sequence (CDS) from alignment at ch7:970644..971838+ >KJC3_009637-T1 ID=KJC3_009637-T1|Name=KJC3_009637-T1|organism=Aspergillus niger KJC3|type=CDS|length=2610bp|location=Sequence derived from alignment at ch7:970644..971838+ (Aspergillus niger KJC3)
ATGCTCCGGTGGTATCAGGCGAGGTTGGCCAAGCAGCCTATCCTCACTGC
TAGTGTGACGAGTGCTCTGTTGTTTGGTAGTGGAGATGTTCTAGCCCAAC
AACTAGTCGATCGTAAGGGATTTGATAAGCACGATCTGGCAAGAACGGGA
CGCATGGCCCTTTATGGTGGAGCGATCTTCGGGCCGGCTGCTACCACCTG
GTACGGTGTCCTCCAGCGTCACGTCGTCCTGAATAACGCCAAAACTACCC
TCATTGCCCGTGTCATCGCGGATCAATGTGTCTTTACTCCCGCACACCTT
ACTTGTTTCTTGTCCTCCATGGCTATCATGGAAGGCACCGATCCGATTGA
GAAGTGGCGCAATGGTTTCGTTCCCAGCTTCAAAGCAAACCTTGCGATTT
GGCCTCTCGTTCAAGGAGTCAACTTTGCCATCGTGCCACTTGAGTACCGC
GTGCTTTTTGTCAACCTAGTCGCTTTGGGCTGGAACTGTTTGTTGAGCTT
GATTAACAGCGGTGAGAAGTGAATGCTCCGGTGGTATCAGGCGAGGTTGG
CCAAGCAGCCTATCCTCACTGCTAGTGTGACGAGTGCTCTGTTGTTTGGT
AGTGGAGATGTTCTAGCCCAACAACTAGTCGATCGTAAGGGATTTGATAA
GCACGATCTGGCAAGAACGGGACGCATGGCCCTTTATGGTGGAGCGATCT
TCGGGCCGGCTGCTACCACCTGGTACGGTGTCCTCCAGCGTCACGTCGTC
CTGAATAACGCCAAAACTACCCTCATTGCCCGTGTCATCGCGGATCAATG
TGTCTTTACTCCCGCACACCTTACTTGTTTCTTGTCCTCCATGGCTATCA
TGGAAGGCACCGATCCGATTGAGAAGTGGCGCAATGGTTTCGTTCCCAGC
TTCAAAGCAAACCTTGCGATTTGGCCTCTCGTTCAAGGAGTCAACTTTGC
CATCGTGCCACTTGAGTACCGCGTGCTTTTTGTCAACCTAGTCGCTTTGG
GCTGGAACTGTTTGTTGAGCTTGATTAACAGCGGTGAGAAGTGAATGCTC
CGGTGGTATCAGGCGAGGTTGGCCAAGCAGCCTATCCTCACTGCTAGTGT
GACGAGTGCTCTGTTGTTTGGTAGTGGAGATGTTCTAGCCCAACAACTAG
TCGATCGTAAGGGATTTGATAAGCACGATCTGGCAAGAACGGGACGCATG
GCCCTTTATGGTGGAGCGATCTTCGGGCCGGCTGCTACCACCTGGTACGG
TGTCCTCCAGCGTCACGTCGTCCTGAATAACGCCAAAACTACCCTCATTG
CCCGTGTCATCGCGGATCAATGTGTCTTTACTCCCGCACACCTTACTTGT
TTCTTGTCCTCCATGGCTATCATGGAAGGCACCGATCCGATTGAGAAGTG
GCGCAATGGTTTCGTTCCCAGCTTCAAAGCAAACCTTGCGATTTGGCCTC
TCGTTCAAGGAGTCAACTTTGCCATCGTGCCACTTGAGTACCGCGTGCTT
TTTGTCAACCTAGTCGCTTTGGGCTGGAACTGTTTGTTGAGCTTGATTAA
CAGCGGTGAGAAGTGAATGCTCCGGTGGTATCAGGCGAGGTTGGCCAAGC
AGCCTATCCTCACTGCTAGTGTGACGAGTGCTCTGTTGTTTGGTAGTGGA
GATGTTCTAGCCCAACAACTAGTCGATCGTAAGGGATTTGATAAGCACGA
TCTGGCAAGAACGGGACGCATGGCCCTTTATGGTGGAGCGATCTTCGGGC
CGGCTGCTACCACCTGGTACGGTGTCCTCCAGCGTCACGTCGTCCTGAAT
AACGCCAAAACTACCCTCATTGCCCGTGTCATCGCGGATCAATGTGTCTT
TACTCCCGCACACCTTACTTGTTTCTTGTCCTCCATGGCTATCATGGAAG
GCACCGATCCGATTGAGAAGTGGCGCAATGGTTTCGTTCCCAGCTTCAAA
GCAAACCTTGCGATTTGGCCTCTCGTTCAAGGAGTCAACTTTGCCATCGT
GCCACTTGAGTACCGCGTGCTTTTTGTCAACCTAGTCGCTTTGGGCTGGA
ACTGTTTGTTGAGCTTGATTAACAGCGGTGAGAAGTGAATGCTCCGGTGG
TATCAGGCGAGGTTGGCCAAGCAGCCTATCCTCACTGCTAGTGTGACGAG
TGCTCTGTTGTTTGGTAGTGGAGATGTTCTAGCCCAACAACTAGTCGATC
GTAAGGGATTTGATAAGCACGATCTGGCAAGAACGGGACGCATGGCCCTT
TATGGTGGAGCGATCTTCGGGCCGGCTGCTACCACCTGGTACGGTGTCCT
CCAGCGTCACGTCGTCCTGAATAACGCCAAAACTACCCTCATTGCCCGTG
TCATCGCGGATCAATGTGTCTTTACTCCCGCACACCTTACTTGTTTCTTG
TCCTCCATGGCTATCATGGAAGGCACCGATCCGATTGAGAAGTGGCGCAA
TGGTTTCGTTCCCAGCTTCAAAGCAAACCTTGCGATTTGGCCTCTCGTTC
AAGGAGTCAACTTTGCCATCGTGCCACTTGAGTACCGCGTGCTTTTTGTC
AACCTAGTCGCTTTGGGCTGGAACTGTTTGTTGAGCTTGATTAACAGCGG
TGAGAAGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009637-T1.utr5p1 | KJC3_009637-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009637-T1.utr3p1 | KJC3_009637-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007248 |
| DBxref | PFAM:PF04117 |
| Product | Protein required for ethanol metabolism |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:970644..971838 + |
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