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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:972283..973786+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009638-T1 ID=KJC3_009638-T1|Name=KJC3_009638-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1504bp|location=Sequence derived from alignment at ch7:972283..973786+ (Aspergillus niger KJC3)
GTGATTTTCTGTCGTCGCCTCATTGAATCCACCCTCTATCACGACTGCTC
TCGCCGTGATTCTGCCTGGAGCAGACGACTCAACTTCGCGTGAACCGATC
GCGCCACTCCTTGCTCCTACTCTGAGCCTGTCACCCCCCAGCTGCGCCTT
CCTCCGCCAATCTCTCCCCGACACAAAATTTGCCATCCGCGCTATTTTGT
CTCTTCCCCTCCGACACGACCGCTCTCCCTCTCATCACCACAATCCCGCC
GCTGCATCCTCTTCAACCACCTCTCACTTTCCCCTCACTTTCTCATTCAA
CTTTCATAATGGCCGCTGTTGCTGAGAACGGCCACGCGCCCGTGGCTGAC
GAGAACGCCGCCCCCGTTGCTGCCGCCGTCGAACAGAAGGAACAGACCGA
GAAGACGAATGGAGACTCTGTCACAGTATTCCACGACCCCGAAAACTTCA
ATGTGAAGCATCCTTTGATGCACGAGTGGACTCTGTGGTTTACCAAGCCC
CCTAGCGGCAAGGTACGGATTCTTGCCGAATCAGACGCAGCAGTTGATCA
GACAACTAACCTTGCCTGTGCGATAGGGCGATAACTGGAATGATCTGTTG
AAGGAAGTCGTGACTTTCAACTCCGTTGAGGAATTCTGGGGTATCTACGT
ATGTGTTCTTCTTTTGGGCCCACCGAGGAGACCTGCCCGCTAACCAATGC
TTCCTTAGAACAACATCTCGCCGACATCCGAGTTGGGCCTCAAAGCAGAC
TACCATCTCTTCAAGAAGGGAGTTCGTCCCGAGTGGGAAGACCCCCAGAA
CAAGCACGGAGGCAAGTGGTCATACTCTTTCAAGGACAAGCGCTCCGTGC
CCATCGACGACCTGTGGCTGCACGCACAACTGGCCGCTATTGGCGAGACT
CTCGAGAACGATGGTGACAACGAGGTTATGGGTGTTGTTGTGAACGTACG
CAAGGGCTTCTACCGTGTTGGTCTGTGGACTCGGACTGTTGGCAAGAGTA
TCCCCGGAGACAAGAACGGTCGCACACCCGCACAGGGCAAGGAGATCCTC
GAGAACATCGGCCGGCGTTTCAAGGAAGTCCTTCGTCTCAAGGAGGCTGA
TGCCGTTGAGTTCTCGGGTCACACGGACAGCGCACACAGCGGCAGCACGA
GAGCCAAGGCCAAGTACACTGTCTAAGGTATAACCTGTGTGTGCAGCTCC
ATTTACGAGGTATTCATTGCGGATCTGTTTCTTTGCTACGGAATAATGGG
AAGTCTTTGTGACGATGGTTGATAACGAATCCGAATGGACCGGCATGAGG
AAATGCGCGTCCGACTTGCTTGCATTTGCAGTTACAGTGGTGGTTCGGTC
ATAGGCACTGATGGCATGTTTCTTTCCCTCAGTACGTATTTCTGACGAGG
TTTATACCATATTTCATCGAGTTATAGCTTTACGCCTCTAGTGGCCCACA
AAATAACGAAAAACACTCTTAAAACATCTTATTCTAGTGCATTCTCAATA
GACA back to topCoding sequence (CDS) from alignment at ch7:972283..973786+ >KJC3_009638-T1 ID=KJC3_009638-T1|Name=KJC3_009638-T1|organism=Aspergillus niger KJC3|type=CDS|length=2232bp|location=Sequence derived from alignment at ch7:972283..973786+ (Aspergillus niger KJC3)
ATGGCCGCTGTTGCTGAGAACGGCCACGCGCCCGTGGCTGACGAGAACGC
CGCCCCCGTTGCTGCCGCCGTCGAACAGAAGGAACAGACCGAGAAGACGA
ATGGAGACTCTGTCACAGTATTCCACGACCCCGAAAACTTCAATGTGAAG
CATCCTTTGATGCACGAGTGGACTCTGTGGTTTACCAAGCCCCCTAGCGG
CAAGGGCGATAACTGGAATGATCTGTTGAAGGAAGTCGTGACTTTCAACT
CCGTTGAGGAATTCTGGGGTATCTACAACAACATCTCGCCGACATCCGAG
TTGGGCCTCAAAGCAGACTACCATCTCTTCAAGAAGGGAGTTCGTCCCGA
GTGGGAAGACCCCCAGAACAAGCACGGAGGCAAGTGGTCATACTCTTTCA
AGGACAAGCGCTCCGTGCCCATCGACGACCTGTGGCTGCACGCACAACTG
GCCGCTATTGGCGAGACTCTCGAGAACGATGGTGACAACGAGGTTATGGG
TGTTGTTGTGAACGTACGCAAGGGCTTCTACCGTGTTGGTCTGTGGACTC
GGACTGTTGGCAAGAGTATCCCCGGAGACAAGAACGGTCGCACACCCGCA
CAGGGCAAGGAGATCCTCGAGAACATCGGCCGGCGTTTCAAGGAAGTCCT
TCGTCTCAAGGAGGCTGATGCCGTTGAGTTCTCGGGTCACACGGACAGCG
CACACAGCGGCAGCACGAGAGCCAAGGCCAAGTACACTGTCTAAATGGCC
GCTGTTGCTGAGAACGGCCACGCGCCCGTGGCTGACGAGAACGCCGCCCC
CGTTGCTGCCGCCGTCGAACAGAAGGAACAGACCGAGAAGACGAATGGAG
ACTCTGTCACAGTATTCCACGACCCCGAAAACTTCAATGTGAAGCATCCT
TTGATGCACGAGTGGACTCTGTGGTTTACCAAGCCCCCTAGCGGCAAGGG
CGATAACTGGAATGATCTGTTGAAGGAAGTCGTGACTTTCAACTCCGTTG
AGGAATTCTGGGGTATCTACAACAACATCTCGCCGACATCCGAGTTGGGC
CTCAAAGCAGACTACCATCTCTTCAAGAAGGGAGTTCGTCCCGAGTGGGA
AGACCCCCAGAACAAGCACGGAGGCAAGTGGTCATACTCTTTCAAGGACA
AGCGCTCCGTGCCCATCGACGACCTGTGGCTGCACGCACAACTGGCCGCT
ATTGGCGAGACTCTCGAGAACGATGGTGACAACGAGGTTATGGGTGTTGT
TGTGAACGTACGCAAGGGCTTCTACCGTGTTGGTCTGTGGACTCGGACTG
TTGGCAAGAGTATCCCCGGAGACAAGAACGGTCGCACACCCGCACAGGGC
AAGGAGATCCTCGAGAACATCGGCCGGCGTTTCAAGGAAGTCCTTCGTCT
CAAGGAGGCTGATGCCGTTGAGTTCTCGGGTCACACGGACAGCGCACACA
GCGGCAGCACGAGAGCCAAGGCCAAGTACACTGTCTAAATGGCCGCTGTT
GCTGAGAACGGCCACGCGCCCGTGGCTGACGAGAACGCCGCCCCCGTTGC
TGCCGCCGTCGAACAGAAGGAACAGACCGAGAAGACGAATGGAGACTCTG
TCACAGTATTCCACGACCCCGAAAACTTCAATGTGAAGCATCCTTTGATG
CACGAGTGGACTCTGTGGTTTACCAAGCCCCCTAGCGGCAAGGGCGATAA
CTGGAATGATCTGTTGAAGGAAGTCGTGACTTTCAACTCCGTTGAGGAAT
TCTGGGGTATCTACAACAACATCTCGCCGACATCCGAGTTGGGCCTCAAA
GCAGACTACCATCTCTTCAAGAAGGGAGTTCGTCCCGAGTGGGAAGACCC
CCAGAACAAGCACGGAGGCAAGTGGTCATACTCTTTCAAGGACAAGCGCT
CCGTGCCCATCGACGACCTGTGGCTGCACGCACAACTGGCCGCTATTGGC
GAGACTCTCGAGAACGATGGTGACAACGAGGTTATGGGTGTTGTTGTGAA
CGTACGCAAGGGCTTCTACCGTGTTGGTCTGTGGACTCGGACTGTTGGCA
AGAGTATCCCCGGAGACAAGAACGGTCGCACACCCGCACAGGGCAAGGAG
ATCCTCGAGAACATCGGCCGGCGTTTCAAGGAAGTCCTTCGTCTCAAGGA
GGCTGATGCCGTTGAGTTCTCGGGTCACACGGACAGCGCACACAGCGGCA
GCACGAGAGCCAAGGCCAAGTACACTGTCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003743 | translation initiation factor activity |
| GO:0003723 | RNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006413 | translational initiation |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009638-T1.utr5p1 | KJC3_009638-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009638-T1.utr3p1 | KJC3_009638-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092646VF |
| DBxref | InterPro:IPR019770 |
| DBxref | InterPro:IPR023398 |
| DBxref | InterPro:IPR001040 |
| DBxref | PFAM:PF01652 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:972283..973786 + |
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