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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:1112870..1117772+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009681-T1 ID=KJC3_009681-T1|Name=KJC3_009681-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4903bp|location=Sequence derived from alignment at ch7:1112870..1117772+ (Aspergillus niger KJC3)
CGAGTCAGTTAGATGCTGACTGGAAAGCTGTTCTCTGCTGCATCACTAAG
CAGTCGCCATGAGTGCCCGATGGGTGCCTTCCACACAAGAAATAATGAAC
CCCGCCCGACCAGCCTGCTTGCGCACTGTGAGTGGCCAGCTGGCCGAGAA
GTCACGTGCCCACTCCCGGGGGGCAGAAAATAAAATCCAAAATTCGAAAA
TCCAAAAAGCCCAAAGCAAAAAATTAAAAAAATCGAAAATAAAAAATAAA
AAATAATAATAACGAAAAAAGGAACGGAGTCCATCAAGATCCCAAACAAA
TCATCGCGCGCGGCCATCTCACGACTTCAAGATCCATCCAGGCATCGCTT
CCTGAGTGGTTTGAGGTCTCTTTTCCCGGCATTCACGGTCTTCTTTGCTC
CTGTTTTCCTGGTCAACCTTGCATTGCCTGTCGGGCGCCCCCTCTGACTG
TCCCCCTGGGAATTTTGCCTCTCCCAACAATTGCGCTTTTGGTCGTTGTG
GGTCCGCCGTATTACTCTCTCAGTCAGCAAAGCCAGTAAGTGTGTTGTGT
TGGTTGATACCTCAGGCCACACAAACTAGGCACCGAATCCCGCATTTTGT
CCCGTCTTGTCAGTCACGCTTTTTCTGATTCCGCTTTGGGGTGGGAATCC
GACTCATTTTATTATTATTATTATTTCGTGTTATCCACCGCCGCAAAATC
ACAGCAAGCAAAGCAGCCGGTCGCACGGCTCTTCTTCAGTTTCAGAAATA
CGCGCCTCAGTGCGCGTCTTTTTCTGACTGCTGCTGCTCTTTGCACTGGA
ATTGGTGTTCCCTGCCTCGCTCTTTCTCTCTCTCTCTCCCCCCGAAAGGA
AGCGTGTCGTTCGTTTGGTGCAGACGCGGTGGTGGTCACATGCCCGCTAT
CTGAGTGTCCCTGACAATCAATCAAACTTCATCAGGGAAAACAAGAAAAA
CATTATAAAATAAATAAAGGCCATTGAAAATATCCACCACGTCAGGCATT
GAGTGAATTTCTTTTCACTCTCATTCTCCTTCCGTCAAGATGATGGGCTA
TAATGGGCATTCGTTTCATCAACAACGCCCGCCCCAGCAAAATGCGCATC
CGCAGCACCAACAGCAGCATCATCTGCAGTCCCCGTCCATGACTGCTGCG
GCTGCTGCTCATCCCCATCATGCTCCCGGCATGGCCAGTAATGGCGCCCT
TTTTCGGGGTCAGTCGCAGGTGGAATTGGCGGCTCAGTCCCCAGATCTCC
GCAAAATGACCCCATCCTCCACCGGCCCTGTAGTCGGCCTCCCCACGGGC
GGCCATTATAGTCCGTTCTCCGGACACTACCCGCCACAAGGCTCGTCCGA
TCTGCTGTCTCGCAATGCCGACTCTGTTGGTCAATTGAAGGATCCCTATC
TATCCTTGCAAAGTCTGCAGCGGAATATGAACCCCATGGCCAATTTCCGC
ACTCATCCCACGATGAATGCGCAGGCTGCCATGTCTCCACATGCGCATGC
AATGGGTCTTGCTTCTCCTCAGCAGTCTTTCGACCGACTGCAGCAGCAAC
ATCTTCAGCATCGACAGACGCCGCACACTCATCCCACGACGCAAACCTCT
GCTGCGGCGTCGCCGATGCTGACTACCGCCCAACCGCAGCATGCTTTCCA
ACAGTCCGCGTATCAACAGACACAACAAGCGTCGCCGTACCAGCATGCGC
AGCAGCAATCCCCTTACCAGCAAGCTCAAGCATCGCCGTACCAAGCGCAG
CAGGCCCAGTATCCGCAGGCCCAGTATCAGCAGCCCCAGCATCAAGCTTC
TCCCTATCAGACACAGGCTCAGCAATCTCCTTACCAGCAACATGCCCACC
AGACGTATCAGCAGCAGCAGCAGGCCCAGCAACAGGCTCAGCAACAAGCA
CAGCAGAAAGCACAGCAGGCTCAACAACAAGCCCAGCAGCAGGCCCAGCA
AAAGGCTCAGCAGCAGGCCCAGCAGCAAGCTCAACAGCAGGCCCAGCAGC
AGGCGCAACAACAGGCTCAACAGCAGGCTCAACAGCAAGCCCAGCAAAAG
GCTCAGCAGCAGGCACAGCAACATGCACAGCAGGCCCAGCAGCAGGCTCA
GCAACAGGCGCAACAGCAGGCTCAGCAGCAAGCAGCACAGCAGACCCAAC
AACCCGCTCATACTCAAGCCCAGCAGCAGCAAGCCCAGCAAACATACCAG
CAACAACAGTCTAGGTTCCAGCAGCAGCAGGCTCAACGGTCGCCGTACCA
GCCTCAGCCACAGCAGCTTCAGTTCCATCATGCATATCAACGCCAATATC
AACAGCCACAAGCGCAAACACAGGTACAAGCTCAACAACCGCAGCCGCAG
CCGCAGCAACAACAGCATCCCATCTTGCAGCAGCATCCCCAGCAGCAGCA
CCATCATGCCTTGCACCAGCCCCAAGCACAGCAGCATCCTTCTCTGTTGC
AACAACATCAGGTACAGCAGCAGCAACCATCACCTGCACAGGCAAAAGCA
CAAATTCAGCAACAGTATCAACCGCATGCCTCCGCTTCAGCTAGCATGTC
GGGACCTGAACTCCTTGCTCCAGTACCGGAGAAAGCTGAGAGCACTGGAA
CCAAGCAACGGAAGAAGCAATCTAAGCCTTCTGCGTCCCCGGCTGCGTCC
GCTACACAGGTTAACGGGCAAGCTCATGCTGGTTATCCAGCTCCTGCTCC
TGTACCTGCTGCAGGCCCTGCTTCCGCCCCTGCTCCAGTATCTGGTGTTG
GTTCAGGCCCCACTTTCACTCCTGCTGGTACATCCAGTTCATCCCAGGGA
CCTGCCACCACAGGGGCCGCTCCTGCAGCCGGCACTGCTCCAACAAATAC
TGCCACGCCAACGCCGAAAAAGAGAGGTCGTCCAAGGAAACCCGTTGTGC
CAGGAGAAGAAAAGAAACCCCGGCCGAAAAAGCCAAAGAAGGCCCAGACG
GTAACAACAACAGCACCCGACGGCACAACGATGGTAGTCCCGGCACCCAC
AACTAATGCTGATGGTACACCTGCGGTTGCAGCTCCCGCTCCTGCACCTG
CACCACCGCCGCAACCGATTATCGGGCCGGACGGGAACCCCATTCCCCAG
AAGCGACGTCGCGGGCGGCCTCGCAAATCAGAACAGGGCAACGTGCCTCC
AAAGCCTAGACCGCCAAAGAAGCCATCGTCCAAGCCGGGCACTGGTCGGC
CCCGTGGACGGCCACGCAAGGCTGATGTTGAAGCACGAAAGGCTGCTGAA
GCGGCGGCGGCCGCCGCCGCTGCAAGTGGCCAGCCTCAAGGTGACCAAGG
TCAAGCTGGAGGCCAAAGCCAGACGTTACAGCAGCCACAGCACTCCCAAG
TTCAACCCCAGGCTTCGGCTCAAACACAGGCGCAAAATCAGCCTCAGTCT
AAGCCGCAGCCGGCACAACCTTCACAACCATACCAGTCATTCCATCAATT
CCAAGTCACCCCGCAGCAGCCTCAACAGATGCACGGGCAAATGACAGGCA
CGTCTAAGGCGCAGACTCACACGAATCAGATGCATACCTCAAGCCAGGCC
CAATTCCAGGCACTCCAACACCAATTCCAAGCGCAACCTCAACCGCATAC
CAATACGCAGGCCAACCAGCAACAGCAGGCCCAACCGCAATCGCATGCCC
GCTCCGGGCAGGCTGCGCAGCAGGCACAGGCACAAGCACAATCTAGACAA
GTGCAGGCTCAAAACCAAGCTCACACACCGGTTCAGCCTCAACCACGTCA
AATACAAGCTCAGGCTCAGCCACAGCCTCAGGCCCGGTCAGTGCAGGCTC
AACCGCAGCCCCAGGCTCAAGCCCAACCCCGTCAAATGCATCCTCAACCA
CAGACACAAGCGCAACAGCAGCCACAGCCACAGCCCCGTCAAATGCCAAT
CCCGGCCCAACCACATGCAGCAATGCATCAACTGCAGCCTCATCAGCTGC
ACGCCCAAGCGCAGGGTCATCCTCACCCTCATCATCCTCAGGCTCACCCT
CATCCCCACGCCCAGTTTCAGCTACACCCCCATCTCCATCCCCACGCACA
ACCGCAACATACTGAGCCAATGACTCTTAATCCGCCCCAGAAGCGCGGTG
CGCCTGTGGACGACGACCCGCGCAAACGGGCCTTCATGATGCCCCAGCAG
ATGTGATTCTTAGCTGAATCATGCTTGTCTGTCTAGCTGCTTTGTTTTTG
CCCTCTAGATATCACGAAAACGCACTGATGCCGTCCTATCCATTTCCTGT
TACTTCCATGGTTTATTGTTTTAATTTCTGGCTTTTCATCTTCATCACCA
TCATCATCATCAATAAACAGTATCTATCATCATTCTTCTGTGGACGTTAT
TCTGGCGAGTCTCTCTCCTCTTATCTGCCGATCAGTTTATTGTCTTGTTT
GTCAAATAGCTTGTGTGTATGTTTTCCGTTTCCATTTCCATCATGATGAT
CGAGTAACCCAATAACCCCAATTCAGTTAGTCATGTTATGTTAAGCCCTT
GCATTATTCGTATGTGTCTTTTGTTCGAATTGTTTGTGTCTTGTTACCTC
GTTTATACTTTTCGTTTAAGCCCCTTGCAAGTAAGTTAAGTACAGGTACA
TGAAATGAAACAACAAGTACGTACATTGAGTTTATTTCCAACATACTGCT
TTATATAAACTAGTAGATACTGTGCCTGTTTTGTTGCCTCGGTAGTTTCA
TAGAATTTTTCTGTCGAGATATTATTCACTCTAGCCAGGTATCACCTGTT
CCTCGGCCACTCTAAATGGTCTCTGACCACGACCACCATCTCTTACACCA
CCCACCATCCATCATCTTGAGATCTAGATAGATCACTTATTAACTTCGAT
GCTGAGTCCACAATGTTGCATTTCATACCTTCATCTTTTCTTGTTTGCAA
CTT back to topCoding sequence (CDS) from alignment at ch7:1112870..1117772+ >KJC3_009681-T1 ID=KJC3_009681-T1|Name=KJC3_009681-T1|organism=Aspergillus niger KJC3|type=CDS|length=3117bp|location=Sequence derived from alignment at ch7:1112870..1117772+ (Aspergillus niger KJC3)
ATGATGGGCTATAATGGGCATTCGTTTCATCAACAACGCCCGCCCCAGCA
AAATGCGCATCCGCAGCACCAACAGCAGCATCATCTGCAGTCCCCGTCCA
TGACTGCTGCGGCTGCTGCTCATCCCCATCATGCTCCCGGCATGGCCAGT
AATGGCGCCCTTTTTCGGGGTCAGTCGCAGGTGGAATTGGCGGCTCAGTC
CCCAGATCTCCGCAAAATGACCCCATCCTCCACCGGCCCTGTAGTCGGCC
TCCCCACGGGCGGCCATTATAGTCCGTTCTCCGGACACTACCCGCCACAA
GGCTCGTCCGATCTGCTGTCTCGCAATGCCGACTCTGTTGGTCAATTGAA
GGATCCCTATCTATCCTTGCAAAGTCTGCAGCGGAATATGAACCCCATGG
CCAATTTCCGCACTCATCCCACGATGAATGCGCAGGCTGCCATGTCTCCA
CATGCGCATGCAATGGGTCTTGCTTCTCCTCAGCAGTCTTTCGACCGACT
GCAGCAGCAACATCTTCAGCATCGACAGACGCCGCACACTCATCCCACGA
CGCAAACCTCTGCTGCGGCGTCGCCGATGCTGACTACCGCCCAACCGCAG
CATGCTTTCCAACAGTCCGCGTATCAACAGACACAACAAGCGTCGCCGTA
CCAGCATGCGCAGCAGCAATCCCCTTACCAGCAAGCTCAAGCATCGCCGT
ACCAAGCGCAGCAGGCCCAGTATCCGCAGGCCCAGTATCAGCAGCCCCAG
CATCAAGCTTCTCCCTATCAGACACAGGCTCAGCAATCTCCTTACCAGCA
ACATGCCCACCAGACGTATCAGCAGCAGCAGCAGGCCCAGCAACAGGCTC
AGCAACAAGCACAGCAGAAAGCACAGCAGGCTCAACAACAAGCCCAGCAG
CAGGCCCAGCAAAAGGCTCAGCAGCAGGCCCAGCAGCAAGCTCAACAGCA
GGCCCAGCAGCAGGCGCAACAACAGGCTCAACAGCAGGCTCAACAGCAAG
CCCAGCAAAAGGCTCAGCAGCAGGCACAGCAACATGCACAGCAGGCCCAG
CAGCAGGCTCAGCAACAGGCGCAACAGCAGGCTCAGCAGCAAGCAGCACA
GCAGACCCAACAACCCGCTCATACTCAAGCCCAGCAGCAGCAAGCCCAGC
AAACATACCAGCAACAACAGTCTAGGTTCCAGCAGCAGCAGGCTCAACGG
TCGCCGTACCAGCCTCAGCCACAGCAGCTTCAGTTCCATCATGCATATCA
ACGCCAATATCAACAGCCACAAGCGCAAACACAGGTACAAGCTCAACAAC
CGCAGCCGCAGCCGCAGCAACAACAGCATCCCATCTTGCAGCAGCATCCC
CAGCAGCAGCACCATCATGCCTTGCACCAGCCCCAAGCACAGCAGCATCC
TTCTCTGTTGCAACAACATCAGGTACAGCAGCAGCAACCATCACCTGCAC
AGGCAAAAGCACAAATTCAGCAACAGTATCAACCGCATGCCTCCGCTTCA
GCTAGCATGTCGGGACCTGAACTCCTTGCTCCAGTACCGGAGAAAGCTGA
GAGCACTGGAACCAAGCAACGGAAGAAGCAATCTAAGCCTTCTGCGTCCC
CGGCTGCGTCCGCTACACAGGTTAACGGGCAAGCTCATGCTGGTTATCCA
GCTCCTGCTCCTGTACCTGCTGCAGGCCCTGCTTCCGCCCCTGCTCCAGT
ATCTGGTGTTGGTTCAGGCCCCACTTTCACTCCTGCTGGTACATCCAGTT
CATCCCAGGGACCTGCCACCACAGGGGCCGCTCCTGCAGCCGGCACTGCT
CCAACAAATACTGCCACGCCAACGCCGAAAAAGAGAGGTCGTCCAAGGAA
ACCCGTTGTGCCAGGAGAAGAAAAGAAACCCCGGCCGAAAAAGCCAAAGA
AGGCCCAGACGGTAACAACAACAGCACCCGACGGCACAACGATGGTAGTC
CCGGCACCCACAACTAATGCTGATGGTACACCTGCGGTTGCAGCTCCCGC
TCCTGCACCTGCACCACCGCCGCAACCGATTATCGGGCCGGACGGGAACC
CCATTCCCCAGAAGCGACGTCGCGGGCGGCCTCGCAAATCAGAACAGGGC
AACGTGCCTCCAAAGCCTAGACCGCCAAAGAAGCCATCGTCCAAGCCGGG
CACTGGTCGGCCCCGTGGACGGCCACGCAAGGCTGATGTTGAAGCACGAA
AGGCTGCTGAAGCGGCGGCGGCCGCCGCCGCTGCAAGTGGCCAGCCTCAA
GGTGACCAAGGTCAAGCTGGAGGCCAAAGCCAGACGTTACAGCAGCCACA
GCACTCCCAAGTTCAACCCCAGGCTTCGGCTCAAACACAGGCGCAAAATC
AGCCTCAGTCTAAGCCGCAGCCGGCACAACCTTCACAACCATACCAGTCA
TTCCATCAATTCCAAGTCACCCCGCAGCAGCCTCAACAGATGCACGGGCA
AATGACAGGCACGTCTAAGGCGCAGACTCACACGAATCAGATGCATACCT
CAAGCCAGGCCCAATTCCAGGCACTCCAACACCAATTCCAAGCGCAACCT
CAACCGCATACCAATACGCAGGCCAACCAGCAACAGCAGGCCCAACCGCA
ATCGCATGCCCGCTCCGGGCAGGCTGCGCAGCAGGCACAGGCACAAGCAC
AATCTAGACAAGTGCAGGCTCAAAACCAAGCTCACACACCGGTTCAGCCT
CAACCACGTCAAATACAAGCTCAGGCTCAGCCACAGCCTCAGGCCCGGTC
AGTGCAGGCTCAACCGCAGCCCCAGGCTCAAGCCCAACCCCGTCAAATGC
ATCCTCAACCACAGACACAAGCGCAACAGCAGCCACAGCCACAGCCCCGT
CAAATGCCAATCCCGGCCCAACCACATGCAGCAATGCATCAACTGCAGCC
TCATCAGCTGCACGCCCAAGCGCAGGGTCATCCTCACCCTCATCATCCTC
AGGCTCACCCTCATCCCCACGCCCAGTTTCAGCTACACCCCCATCTCCAT
CCCCACGCACAACCGCAACATACTGAGCCAATGACTCTTAATCCGCCCCA
GAAGCGCGGTGCGCCTGTGGACGACGACCCGCGCAAACGGGCCTTCATGA
TGCCCCAGCAGATGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000785 | chromatin |
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009681-T1.utr5p1 | KJC3_009681-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009681-T1.utr3p1 | KJC3_009681-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR000116 |
| DBxref | InterPro:IPR017956 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:1112870..1117772 + |
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