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KJC3_009729-T2, KJC3_009729-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009729-T2
Unique NameKJC3_009729-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:1255506..1256789-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009729-T2 ID=KJC3_009729-T2|Name=KJC3_009729-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1284bp|location=Sequence derived from alignment at ch7:1255506..1256789- (Aspergillus niger KJC3)
GAGTGCGCATTGCTCTTGTCATTGTTTACCAGCCGCTTGCAAACTTGAGT
TTCTTGAAGTTTTGTGTCGTTCATATTTAATTACCTTGACACTTGAGTTT
AACGAGCGTGTTTTACAATCATGTCATCTGCAACAAAAGCATCTAGGATT
GGGGAAGAGTAAGTTGTTCATTCGCTTCACTTGACCAGTAACCCCTTACT
AACCTCCTGACCTTGACAGGCTGTGGAAGTCAGTAAGCTGCATGCGTATA
GTTGGCGCTCGAACACCCCTCAGGAGACGAGCGAAGCCGGCTTGGGATGG
ACAGGCAACTGACATACACCCGACATTACTAGGACGAGAGTTGACAAAGT
GAACGCCGAGTTGGTAACATTAACTTACGGTACAATTGTCGCGCAACTTT
GCCAGGACTACGATGGAAATTACCAAGAAGTGAACAAGCAACTGGAGAAG
ATGGGTTACAATATTGGAATGCGACTTATCGAGGACTTTTTGGCCAAGTC
GGGCGTCGGCCGATGTGCTAATTTCCGGGAAACGGCGGATATGATCGCAA
AGGTATGTTGAGGCCAACAGGTGGAGTAATTGGTCGAAAGTATATGGGCT
TCTGTGGGCTGACGAGTTTAATGCCCACTGCAGGTTGGGTTCAGGATCTT
CCTCAACATCGCACCCACCGTCACCAACTGGACGAGTGACAACAACCAAT
TCTCTCTCATATTTGAAGAAAACCCGTTGGCAGATTTTGTTGAGTTGCCC
GATGACGGACGGGCTCAAGATGAGCTGTGGTTTTCCAATATCCTCTGTGG
AGTTCTGCGGGGTGCATTGGAGATGGTAAGACGGCGTACTGCAGGGAGTT
GATCTGTTCTCTGCTAGCCACTTCCATGCATGTATTTGTGCTAATTCTGG
GAACAGGTGCAAATGCAGATCGAGGCGCATTTTGTGAGCGACGTTTTGCG
GGGCGATGACACAACGGAAATGCGGGTGTCACTTGTACGGTACATTGAGG
ATGAGATGCCACCCGATGAGGAGTAATGGTGCCAGCCGTATGGTTCTGGG
ATTGTTTATACAAGTAGAGGCGTCTGGTGTTTTGAGGGTTTTAACCGCCG
ATTTGGAGCTGCAGTTACCGATGAATATTATCTCGATTATGAGTTATGAT
TGATACTGAGTCTTGCATCTTGTTTTTTCTTTTTTTCCATTGTCCTATAG
TTCTCGCACTAAACCGCGTTTACATAGAAGGTCTCCTGCAGGTCAACAAT
GCCAGACACAATACCATTGTCACAGACGGACGAG
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Coding sequence (CDS) from alignment at ch7:1255506..1256789-

>KJC3_009729-T2 ID=KJC3_009729-T2|Name=KJC3_009729-T2|organism=Aspergillus niger KJC3|type=CDS|length=1242bp|location=Sequence derived from alignment at ch7:1255506..1256789- (Aspergillus niger KJC3)
GTGCAAATGCAGATCGAGGCGCATTTTGTGAGCGACGTTTTGCGGGGCGA
TGACACAACGGAAATGCGGGTGTCACTTGTACGGTACATTGAGGATGAGA
TGCCACCCGATGAGGAGTAAGTTGGGTTCAGGATCTTCCTCAACATCGCA
CCCACCGTCACCAACTGGACGAGTGACAACAACCAATTCTCTCTCATATT
TGAAGAAAACCCGTTGGCAGATTTTGTTGAGTTGCCCGATGACGGACGGG
CTCAAGATGAGCTGTGGTTTTCCAATATCCTCTGTGGAGTTCTGCGGGGT
GCATTGGAGATGATGGGTTACAATATTGGAATGCGACTTATCGAGGACTT
TTTGGCCAAGTCGGGCGTCGGCCGATGTGCTAATTTCCGGGAAACGGCGG
ATATGATCGCAAAGGTGCAAATGCAGATCGAGGCGCATTTTGTGAGCGAC
GTTTTGCGGGGCGATGACACAACGGAAATGCGGGTGTCACTTGTACGGTA
CATTGAGGATGAGATGCCACCCGATGAGGAGTAAGTTGGGTTCAGGATCT
TCCTCAACATCGCACCCACCGTCACCAACTGGACGAGTGACAACAACCAA
TTCTCTCTCATATTTGAAGAAAACCCGTTGGCAGATTTTGTTGAGTTGCC
CGATGACGGACGGGCTCAAGATGAGCTGTGGTTTTCCAATATCCTCTGTG
GAGTTCTGCGGGGTGCATTGGAGATGATGGGTTACAATATTGGAATGCGA
CTTATCGAGGACTTTTTGGCCAAGTCGGGCGTCGGCCGATGTGCTAATTT
CCGGGAAACGGCGGATATGATCGCAAAGGTGCAAATGCAGATCGAGGCGC
ATTTTGTGAGCGACGTTTTGCGGGGCGATGACACAACGGAAATGCGGGTG
TCACTTGTACGGTACATTGAGGATGAGATGCCACCCGATGAGGAGTAAGT
TGGGTTCAGGATCTTCCTCAACATCGCACCCACCGTCACCAACTGGACGA
GTGACAACAACCAATTCTCTCTCATATTTGAAGAAAACCCGTTGGCAGAT
TTTGTTGAGTTGCCCGATGACGGACGGGCTCAAGATGAGCTGTGGTTTTC
CAATATCCTCTGTGGAGTTCTGCGGGGTGCATTGGAGATGATGGGTTACA
ATATTGGAATGCGACTTATCGAGGACTTTTTGGCCAAGTCGGGCGTCGGC
CGATGTGCTAATTTCCGGGAAACGGCGGATATGATCGCAAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
Vocabulary: Biological Process
TermDefinition
GO:0048193Golgi vesicle transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TRAPPC3KJC3_009729Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009729-T2KJC3_009729-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009729-T2.cdsKJC3_009729-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009729-T2.utr3p1KJC3_009729-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009729-T2.exon5KJC3_009729-T2.exon5Aspergillus niger KJC3exon
KJC3_009729-T2.exon4KJC3_009729-T2.exon4Aspergillus niger KJC3exon
KJC3_009729-T2.exon3KJC3_009729-T2.exon3Aspergillus niger KJC3exon
KJC3_009729-T2.exon2KJC3_009729-T2.exon2Aspergillus niger KJC3exon
KJC3_009729-T2.exon1KJC3_009729-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009729-T2.utr5p3KJC3_009729-T2.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_009729-T2.utr5p2KJC3_009729-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_009729-T2.utr5p1KJC3_009729-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR024096
DBxrefInterPro:IPR007194
DBxrefInterPro:IPR016721
DBxrefPFAM:PF04051
Product variant 2
ProductTrafficking protein particle complex subunit 3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:1255506..1256789 -
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