You are here

Home

KJC3_009888-T1, KJC3_009888-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009888-T1
Unique NameKJC3_009888-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:1744777..1745956+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009888-T1 ID=KJC3_009888-T1|Name=KJC3_009888-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1180bp|location=Sequence derived from alignment at ch7:1744777..1745956+ (Aspergillus niger KJC3)
CACCGTCTCAATACATACTTTCGAATCTGGAGTCAACATCCACCAGTGTG
CAGAACGCGCGTTTCGTATATTCCCTTCCTTGTCGCCCATCATGTCAGAT
CGCGAATTTAGTGGTACGTTCTTTGCCAGATTACTTCCTGGCGCGATATT
ATGATGTCAAGCTAACTTGCGATTTTCCTAGCGAACGACGACTTGTCGCT
ACCTAAAGGTATGTCGCCTTCCGCCGTGTTGTCGCGTCGCATCGACTCCC
CCACTTTTGAGGGCAGTGGGACTCGTCGCCCTTTGATTTGCCTACCTCGG
ACTCAGTATAAAATATAATCAAATATCCATTATATACTAAATCGCAAACC
ATACTCACAGCGACGGTCCAAAAGATCATCACCGAGATCCTACCTCCTTC
ATCCGGCCAGACATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCT
GCGTTGAATTCATCACTTTGATCTCCTCCGAAGCCAATGATATCAGTGAA
AAGGAAGCCAAGAAGACCATCGCCTGCGAACATGTCGAGCGCGCCCTCCG
TGATCTCGGTTTCAGCAACTACATTCCCGATGTCCTTGCTGTCGCAGAGG
AACACAAAGAGCAGTTGAAGGTATGTGGCTGATACCATTACCTTGTTTGT
GGCATTGTCCGGCTAACACAGATCGATTACACTAGTCGCGAGAGAAGAAG
CAGAGCAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAGCTTCTACGGCA
GCAACAGGAGTTGTTCCGCTCAGCTACTGAGAAGTATCACGCTGCTCCGG
AGTGAAGGTTACGATTTTAATATCCGGGAAGGCTAAAAAAGTAATGCGGT
TAGTCTCATGCTGGTCATAGAGGGTCTGGTTCCGGAGTTCTTGAGACGTT
TCCTACGACGGGGATTTGGAGTTCGGGTGGTTCTGGTATTATACGCTTTA
TACGCTTTGTGGGATGGATTTTTATCACTATACTTTTTCTTCTATATTCT
CCTGGCTGAGGCAGTCTTTCTGGTTCGTTATATTATTATTTATTGATGTG
CATGGCGGTATAATGCAGTCCTCTGATCAGAGGATATGGTTCATGTTCTA
GTAGTGCTTATACCCATGGTAGTGACTATAGTTGACGTCCGGGAAATACC
AACAGCAACAACGAAACATGGTATGTGGAT
back to top

Coding sequence (CDS) from alignment at ch7:1744777..1745956+

>KJC3_009888-T1 ID=KJC3_009888-T1|Name=KJC3_009888-T1|organism=Aspergillus niger KJC3|type=CDS|length=1716bp|location=Sequence derived from alignment at ch7:1744777..1745956+ (Aspergillus niger KJC3)
ATGTCAGATCGCGAATTTAGTGCGAACGACGACTTGTCGCTACCTAAAGC
GACGGTCCAAAAGATCATCACCGAGATCCTACCTCCTTCATCCGGCCAGA
CATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCTGCGTTGAATTC
ATCACTTTGATCTCCTCCGAAGCCAATGATATCAGTGAAAAGGAAGCCAA
GAAGACCATCGCCTGCGAACATGTCGAGCGCGCCCTCCGTGATCTCGGTT
TCAGCAACTACATTCCCGATGTCCTTGCTGTCGCAGAGGAACACAAAGAG
CAGTTGAAGTCGCGAGAGAAGAAGCAGAGCAAGATGGAGCAGAGCGGGTT
GTCCGAGGAGGAGCTTCTACGGCAGCAACAGGAGTTGTTCCGCTCAGCTA
CTGAGAAGTATCACGCTGCTCCGGAGTGAATGTCAGATCGCGAATTTAGT
GCGAACGACGACTTGTCGCTACCTAAAGCGACGGTCCAAAAGATCATCAC
CGAGATCCTACCTCCTTCATCCGGCCAGACATTCTCCAAAGATGCTCGCG
ATCTCCTCATGGAATGCTGCGTTGAATTCATCACTTTGATCTCCTCCGAA
GCCAATGATATCAGTGAAAAGGAAGCCAAGAAGACCATCGCCTGCGAACA
TGTCGAGCGCGCCCTCCGTGATCTCGGTTTCAGCAACTACATTCCCGATG
TCCTTGCTGTCGCAGAGGAACACAAAGAGCAGTTGAAGTCGCGAGAGAAG
AAGCAGAGCAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAGCTTCTACG
GCAGCAACAGGAGTTGTTCCGCTCAGCTACTGAGAAGTATCACGCTGCTC
CGGAGTGAATGTCAGATCGCGAATTTAGTGCGAACGACGACTTGTCGCTA
CCTAAAGCGACGGTCCAAAAGATCATCACCGAGATCCTACCTCCTTCATC
CGGCCAGACATTCTCCAAAGATGCTCGCGATCTCCTCATGGAATGCTGCG
TTGAATTCATCACTTTGATCTCCTCCGAAGCCAATGATATCAGTGAAAAG
GAAGCCAAGAAGACCATCGCCTGCGAACATGTCGAGCGCGCCCTCCGTGA
TCTCGGTTTCAGCAACTACATTCCCGATGTCCTTGCTGTCGCAGAGGAAC
ACAAAGAGCAGTTGAAGTCGCGAGAGAAGAAGCAGAGCAAGATGGAGCAG
AGCGGGTTGTCCGAGGAGGAGCTTCTACGGCAGCAACAGGAGTTGTTCCG
CTCAGCTACTGAGAAGTATCACGCTGCTCCGGAGTGAATGTCAGATCGCG
AATTTAGTGCGAACGACGACTTGTCGCTACCTAAAGCGACGGTCCAAAAG
ATCATCACCGAGATCCTACCTCCTTCATCCGGCCAGACATTCTCCAAAGA
TGCTCGCGATCTCCTCATGGAATGCTGCGTTGAATTCATCACTTTGATCT
CCTCCGAAGCCAATGATATCAGTGAAAAGGAAGCCAAGAAGACCATCGCC
TGCGAACATGTCGAGCGCGCCCTCCGTGATCTCGGTTTCAGCAACTACAT
TCCCGATGTCCTTGCTGTCGCAGAGGAACACAAAGAGCAGTTGAAGTCGC
GAGAGAAGAAGCAGAGCAAGATGGAGCAGAGCGGGTTGTCCGAGGAGGAG
CTTCTACGGCAGCAACAGGAGTTGTTCCGCTCAGCTACTGAGAAGTATCA
CGCTGCTCCGGAGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NCB2KJC3_009888Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009888-T1KJC3_009888-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009888-T1.utr5p1KJC3_009888-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009888-T1.exon1KJC3_009888-T1.exon1Aspergillus niger KJC3exon
KJC3_009888-T1.exon2KJC3_009888-T1.exon2Aspergillus niger KJC3exon
KJC3_009888-T1.exon3KJC3_009888-T1.exon3Aspergillus niger KJC3exon
KJC3_009888-T1.exon4KJC3_009888-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009888-T1.cdsKJC3_009888-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009888-T1.utr3p1KJC3_009888-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR003958
DBxrefPFAM:PF00125
DBxrefPFAM:PF00808
Productnegative cofactor 2 transcription regulator complex subunit ncb2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:1744777..1745956 +
Powered by Drupal