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KJC3_010012-T1, KJC3_010012-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_010012-T1
Unique NameKJC3_010012-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:2070496..2072245+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_010012-T1 ID=KJC3_010012-T1|Name=KJC3_010012-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1750bp|location=Sequence derived from alignment at ch7:2070496..2072245+ (Aspergillus niger KJC3)
CCGCAGCAAATCTTCAAAGTATTCCGTTCGGTTAACTGCTTTCAATCACT
CTACCACCTTACACGATGTCTTTTCGCAAGAGAAATATTGGACTTTCGGC
AGGCGCTGATCGCACCGGTGCCGTTAATGCTAACGCACAGCCGCAACAGC
CTTCTGCGACGCCAGAATTGACTCCCGGAGTTCGCCCCTCCCCCGACGAC
GGGCGCCCGACTACTTCGACTGGTACTCCGTCGCTGGATAACCTTCTGGC
TGGGCATGGAGGTCTTCCCATCGGGAAGACACTGCTGATTGAGGAGAATG
GAACTACGGATTTTGCTGGTGCACTGCTAAGATACTATGCGGCAGAGGGT
GTTGTGCAAGATCAAAAGATTCATATCGTGGGAATGCCTGAACAATGGGG
AAGAAGTCTTCCGGGCTTGTTAGGCCCTGCTGATGCTATTGATGACAAGC
AAGACAAACGGAAAGGCGAGCGCATGAAGATCGCTTGGCGATACGAGCGT
CTGGGCGAGTTCGGAGCAGGAATTGCTGGTTCAAGAGGTATACTATCTTG
TCATATTGTCACTGTGAGAGTTTAGAGGTAGTGTGCTAACAGACACGATT
CTGCAGCGCCCTCAGGAGACCAGAGCCAATCTGCCGCAGACCCAAACGTG
GACAAGCGACCAGCATTCTGCCATGCGTTTGACCTCACGAAACGTCTCAC
TCACCCATCCATAGCCAACCTGAACTATATACCCCTCGCGCCATCGAACG
AGCCTTTGTTTGTGTCGATTCACAAACGTCTTCAAGCTGCAATTGCCTCT
TGCCCGCCAAATACTGTCCATCGCATCCTCATCCCTTCGTTATTAAATCC
CACGATATACCCACCCGATTCCTGCCAGCCCGACAACCTTCTACCGTTCC
TACACTCCCTCAGGGCTTTGATGAGCGCGCAGGGCGCACGGGTGACGGCG
ATGATCACTCTGCCCTTGTCCCTTTTCCCCCGCGCCACGGGACTTGTGCG
ATGGATGGAATTGTTGAGTGACGGTGTCATTGAATTGTGTCCCTTCCCGC
ACTCTTCTGATGCTCTCGCAACCTCGGGTGCCGCTACTTCACAGGAGGAA
CCACCACAGGGCATGCTGAAGGTCCATCGACTACCAGTACTGCACGAACG
TGGCGGTGGTAGCGATCAGAACATCGGACAGGATTGGGCTTTCACGCTGA
GCCGGAAGAAGTTCGAAATCAAGCCGTTCAGCTTACCGCCAGCTGAAGGA
GACAAGGAGGGGCAGGATGCAGCGGTAACGGGTGGAATGCCAAAGAAGGC
GGATCTTGAGTTCTAAGTTGCACGAAGGGTGGAACAGCCAAAACCAGACC
ACAATCACTCCTCGTGATCCGAATCGTCCAACATATTCTGCAGCTCGATC
TGCTCGGACATAGCGGACCCAGTGTTGACCATTGATCGGAGGTAGTGTCT
CCCATATGAGTCAAGTCCAGGTCCGGCAGGTGATGCTGAGAAATAAGTCC
GAAGACGAGGTGCGATGAATTTCGAGAAGCCTAGATATGCTTCGAGCTGT
CAGCGGCTTGTCAGTGGAGATGGGCGAGCCGGTGGTACCTAAGAGTAGCA
GAAAGGGTGCAAAGAACACCATAAAAAGTAGGAACAAGAAGCTCATTCTG
TCTTAGGGTGGCAATCTAGTCACTTGAACAGCTTCCGATAATGATTATAC
GGATCTTATCATCTAGTGGTAGCTTTCACGAATCTCCGAAGAGCATCAAC
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Coding sequence (CDS) from alignment at ch7:2070496..2072245+

>KJC3_010012-T1 ID=KJC3_010012-T1|Name=KJC3_010012-T1|organism=Aspergillus niger KJC3|type=CDS|length=2364bp|location=Sequence derived from alignment at ch7:2070496..2072245+ (Aspergillus niger KJC3)
ATGTCTTTTCGCAAGAGAAATATTGGACTTTCGGCAGGCGCTGATCGCAC
CGGTGCCGTTAATGCTAACGCACAGCCGCAACAGCCTTCTGCGACGCCAG
AATTGACTCCCGGAGTTCGCCCCTCCCCCGACGACGGGCGCCCGACTACT
TCGACTGGTACTCCGTCGCTGGATAACCTTCTGGCTGGGCATGGAGGTCT
TCCCATCGGGAAGACACTGCTGATTGAGGAGAATGGAACTACGGATTTTG
CTGGTGCACTGCTAAGATACTATGCGGCAGAGGGTGTTGTGCAAGATCAA
AAGATTCATATCGTGGGAATGCCTGAACAATGGGGAAGAAGTCTTCCGGG
CTTGTTAGGCCCTGCTGATGCTATTGATGACAAGCAAGACAAACGGAAAG
GCGAGCGCATGAAGATCGCTTGGCGATACGAGCGTCTGGGCGAGTTCGGA
GCAGGAATTGCTGGTTCAAGAGCGCCCTCAGGAGACCAGAGCCAATCTGC
CGCAGACCCAAACGTGGACAAGCGACCAGCATTCTGCCATGCGTTTGACC
TCACGAAACGTCTCACTCACCCATCCATAGCCAACCTGAACTATATACCC
CTCGCGCCATCGAACGAGCCTTTGTTTGTGTCGATTCACAAACGTCTTCA
AGCTGCAATTGCCTCTTGCCCGCCAAATACTGTCCATCGCATCCTCATCC
CTTCGTTATTAAATCCCACGATATACCCACCCGATTCCTGCCAGCCCGAC
AACCTTCTACCGTTCCTACACTCCCTCAGGGCTTTGATGAGCGCGCAGGG
CGCACGGGTGACGGCGATGATCACTCTGCCCTTGTCCCTTTTCCCCCGCG
CCACGGGACTTGTGCGATGGATGGAATTGTTGAGTGACGGTGTCATTGAA
TTGTGTCCCTTCCCGCACTCTTCTGATGCTCTCGCAACCTCGGGTGCCGC
TACTTCACAGGAGGAACCACCACAGGGCATGCTGAAGGTCCATCGACTAC
CAGTACTGCACGAACGTGGCGGTGGTAGCGATCAGAACATCGGACAGGAT
TGGGCTTTCACGCTGAGCCGGAAGAAGTTCGAAATCAAGCCGTTCAGCTT
ACCGCCAGCTGAAGGAGACAAGGAGGGGCAGGATGCAGCGGTAACGGGTG
GAATGCCAAAGAAGGCGGATCTTGAGTTCTAAATGTCTTTTCGCAAGAGA
AATATTGGACTTTCGGCAGGCGCTGATCGCACCGGTGCCGTTAATGCTAA
CGCACAGCCGCAACAGCCTTCTGCGACGCCAGAATTGACTCCCGGAGTTC
GCCCCTCCCCCGACGACGGGCGCCCGACTACTTCGACTGGTACTCCGTCG
CTGGATAACCTTCTGGCTGGGCATGGAGGTCTTCCCATCGGGAAGACACT
GCTGATTGAGGAGAATGGAACTACGGATTTTGCTGGTGCACTGCTAAGAT
ACTATGCGGCAGAGGGTGTTGTGCAAGATCAAAAGATTCATATCGTGGGA
ATGCCTGAACAATGGGGAAGAAGTCTTCCGGGCTTGTTAGGCCCTGCTGA
TGCTATTGATGACAAGCAAGACAAACGGAAAGGCGAGCGCATGAAGATCG
CTTGGCGATACGAGCGTCTGGGCGAGTTCGGAGCAGGAATTGCTGGTTCA
AGAGCGCCCTCAGGAGACCAGAGCCAATCTGCCGCAGACCCAAACGTGGA
CAAGCGACCAGCATTCTGCCATGCGTTTGACCTCACGAAACGTCTCACTC
ACCCATCCATAGCCAACCTGAACTATATACCCCTCGCGCCATCGAACGAG
CCTTTGTTTGTGTCGATTCACAAACGTCTTCAAGCTGCAATTGCCTCTTG
CCCGCCAAATACTGTCCATCGCATCCTCATCCCTTCGTTATTAAATCCCA
CGATATACCCACCCGATTCCTGCCAGCCCGACAACCTTCTACCGTTCCTA
CACTCCCTCAGGGCTTTGATGAGCGCGCAGGGCGCACGGGTGACGGCGAT
GATCACTCTGCCCTTGTCCCTTTTCCCCCGCGCCACGGGACTTGTGCGAT
GGATGGAATTGTTGAGTGACGGTGTCATTGAATTGTGTCCCTTCCCGCAC
TCTTCTGATGCTCTCGCAACCTCGGGTGCCGCTACTTCACAGGAGGAACC
ACCACAGGGCATGCTGAAGGTCCATCGACTACCAGTACTGCACGAACGTG
GCGGTGGTAGCGATCAGAACATCGGACAGGATTGGGCTTTCACGCTGAGC
CGGAAGAAGTTCGAAATCAAGCCGTTCAGCTTACCGCCAGCTGAAGGAGA
CAAGGAGGGGCAGGATGCAGCGGTAACGGGTGGAATGCCAAAGAAGGCGG
ATCTTGAGTTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0033588Elongator holoenzyme complex
Vocabulary: Biological Process
TermDefinition
GO:0002098tRNA wobble uridine modification
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_010012KJC3_010012Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010012-T1.utr5p1KJC3_010012-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010012-T1.exon1KJC3_010012-T1.exon1Aspergillus niger KJC3exon
KJC3_010012-T1.exon2KJC3_010012-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010012-T1.cdsKJC3_010012-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010012-T1.utr3p1KJC3_010012-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010012-T1KJC3_010012-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR008728
DBxrefPFAM:PF05625
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:2070496..2072245 +
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