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KJC3_010013-T1, KJC3_010013-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_010013-T1
Unique NameKJC3_010013-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:2072371..2073668+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_010013-T1 ID=KJC3_010013-T1|Name=KJC3_010013-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1298bp|location=Sequence derived from alignment at ch7:2072371..2073668+ (Aspergillus niger KJC3)
CTCATTCAACGACAATCTGGATTTGCTGGCCAAGTCCACGAGCATCATTT
CTCAATTCGATACTCTATAATGCTGAGTTGTATTGATGGTAAGCAACTGT
CCCTTTCTTCCGCGTCAATTGTTCTTGCTTGCATGATTATACAAATACTA
TAATCTGTCAATCCCCTGAAGCTCAACTAAATAATCTCATTAAAACGAGC
ATATGTGATTGAGAAACGTATCGAAAATGATTAGCATTTTCTTGCGCTTT
ATGTTTCATCCATACATGTCATGGAAGCTGAACGCTAACGTTCATTCAGT
CGCACCAGATCCCTTGATAAATTGAATTGCCCTTAGTCGCTAAAATGGAT
ATCGAACCCACCCTTCCTATTCCGATCTCGTATATTGGGGGTAGCTACTT
TCTCTTCTCAATTGATGCAGTTACGTATGTGAGACGCGAGTATCACATTT
GCGGCGTCTTAAGCGGCACATTGCCTCAAATTCCACAACAGAATGTCTTC
CTGGGCTTGCCATTGAAGCTAATGCCGGAAGAGGCCCGGTTGCTCGTGGA
GAAAGGTGTAGCATGCATTGTAGACGAGGTAAAAGTCCAAAAGGACGGAA
TGCGAGCCCTCATGGAGGAGGATCGCAAGAAGTATCTCCGTGAGCTAGAA
TCTCAAGGCCAGCATGCTATGCGACTACAGAACGACCGGAAGGAGCAGCA
ACGCGAGAAGGCTTTAAAGAAAATAGAAGAAAAGAAGGCCGCAAAGGCCA
AAAAGTCTGCTGAAAGGCAGCAGGAGCAGCAGCCTGCCCCTCTTAATAAT
GAGGCTGCTGCTCAAGACCCGGTTGTTGACTTGTTCGCAAATGACCAGGA
GGGTACTGGCGAAATGTCGCGCCGTTCTTCGACTGCCACTGCTGCTCCCT
TTGGCACTGTCATGGGAGTCACGCCTGCTACATCTTATCCGCCTCTTCCG
TATGAGTGGTCTGCTGAGCAACAGCTACCGCTTCCTGATGTGCCTTCCTC
ATACCCATTATTCGCTCACCTTCATTCCGAAGGATACTTCTTATCCCCTG
GGTTGCGATTCGGGTGTCAGTATCTTGCCTATCCCGGTGATCCTTTACGG
TTCCATTCACACTTCCTGAGTGTGTCTGCTGACTGGGATGAGGAGTTGGA
TTTGATGAGCATCGTTGCCGGTGGTCGACTAGGTACTGGTGTGAAGAAGG
GTTTCTTGATTGGAGGAGCTGAGAAGAAGATCGAGGGCTCGGATGCTGGA
GACCCCAGTAGTGTGAGGACTTTCAGCATTGAATGGGGTGGAATGTGA
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Coding sequence (CDS) from alignment at ch7:2072371..2073668+

>KJC3_010013-T1 ID=KJC3_010013-T1|Name=KJC3_010013-T1|organism=Aspergillus niger KJC3|type=CDS|length=954bp|location=Sequence derived from alignment at ch7:2072371..2073668+ (Aspergillus niger KJC3)
ATGGATATCGAACCCACCCTTCCTATTCCGATCTCGTATATTGGGGGTAG
CTACTTTCTCTTCTCAATTGATGCAGTTACGTATGTGAGACGCGAGTATC
ACATTTGCGGCGTCTTAAGCGGCACATTGCCTCAAATTCCACAACAGAAT
GTCTTCCTGGGCTTGCCATTGAAGCTAATGCCGGAAGAGGCCCGGTTGCT
CGTGGAGAAAGGTGTAGCATGCATTGTAGACGAGGTAAAAGTCCAAAAGG
ACGGAATGCGAGCCCTCATGGAGGAGGATCGCAAGAAGTATCTCCGTGAG
CTAGAATCTCAAGGCCAGCATGCTATGCGACTACAGAACGACCGGAAGGA
GCAGCAACGCGAGAAGGCTTTAAAGAAAATAGAAGAAAAGAAGGCCGCAA
AGGCCAAAAAGTCTGCTGAAAGGCAGCAGGAGCAGCAGCCTGCCCCTCTT
AATAATGAGGCTGCTGCTCAAGACCCGGTTGTTGACTTGTTCGCAAATGA
CCAGGAGGGTACTGGCGAAATGTCGCGCCGTTCTTCGACTGCCACTGCTG
CTCCCTTTGGCACTGTCATGGGAGTCACGCCTGCTACATCTTATCCGCCT
CTTCCGTATGAGTGGTCTGCTGAGCAACAGCTACCGCTTCCTGATGTGCC
TTCCTCATACCCATTATTCGCTCACCTTCATTCCGAAGGATACTTCTTAT
CCCCTGGGTTGCGATTCGGGTGTCAGTATCTTGCCTATCCCGGTGATCCT
TTACGGTTCCATTCACACTTCCTGAGTGTGTCTGCTGACTGGGATGAGGA
GTTGGATTTGATGAGCATCGTTGCCGGTGGTCGACTAGGTACTGGTGTGA
AGAAGGGTTTCTTGATTGGAGGAGCTGAGAAGAAGATCGAGGGCTCGGAT
GCTGGAGACCCCAGTAGTGTGAGGACTTTCAGCATTGAATGGGGTGGAAT
GTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000214tRNA-intron endonuclease complex
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004518nuclease activity
GO:0000213tRNA-intron endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0000379tRNA-type intron splice site recognition and cleavage
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_010013KJC3_010013Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010013-T1.utr5p1KJC3_010013-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_010013-T1.utr5p2KJC3_010013-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010013-T1.exon1KJC3_010013-T1.exon1Aspergillus niger KJC3exon
KJC3_010013-T1.exon2KJC3_010013-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010013-T1.cdsKJC3_010013-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010013-T1KJC3_010013-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263U71
DBxrefInterPro:IPR036167
DBxrefInterPro:IPR006676
DBxrefInterPro:IPR016690
DBxrefInterPro:IPR011856
DBxrefInterPro:IPR006677
DBxrefPFAM:PF01974
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:2072371..2073668 +
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