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KJC3_010061-T1, KJC3_010061-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_010061-T1
Unique NameKJC3_010061-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:2226397..2227682-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_010061-T1 ID=KJC3_010061-T1|Name=KJC3_010061-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1286bp|location=Sequence derived from alignment at ch7:2226397..2227682- (Aspergillus niger KJC3)
CTTTTTTCTCTTCCTTTTCCTCTAATCTCCTCCTCAATTCCAACATCCTC
CTCACCTCTCCCTTTCACTTTTTACCTCATACCCCCTAATATCCATCACC
ATGGCTGACGAGGTAGGTGTTAACTCTCCTTCTGCGAACTTCCCGGTCTA
CTCAGTTGCGGCCTATCTTTGTCCTGCTTGCTCGGTTGGGTTGGGTGTCT
TCGGGGCCTCGCATCTCGATCGCTGCCCCCCACCCAACCCCCCTCGTTCC
TGCAGACATTGCATATTTTGCTACACTCGCCGACCATCTGCTATAATTTC
AATCATGGGCTAGTTCGCTAATGTTCACCTTTAACAGCACCACGAGACCT
TCGAGTCCGCCGACGCCGGCGCCTCGGCCACCTTCCCCATGCAGTGCTCT
GCCCTGCGCAAGAACGGTCACGTTGTTATCAAGGGCCGCCCCTGCAAGAT
CGTTGAGATGTCCACCTCCAAGACTGGCAAGCACGGTCACGCCAAGGTCC
ACATCGTTGCCATCGATATCTTCACTGGCAAGAAGCTTGAGGATCTGTCC
CCCTCCACCCACAACATGGACGTCCCCAACGTCTACCGCAAGGAATACCA
GCTCGTGAGTAGTTTGGAACATGAACGGTCTTGGTGATCTTGACTCGCTA
ACACAGCTATAGCTTGACGTTACTGACGACGACTTCCTTTCCCTGATGGA
CGAGAACGGTAACACCAAGGACGACGTCAAGGTCCCCGAAGGTGAGGTGG
GCGACCGTATCCGCCGCATGTTCCACGATGAGGAGAAGGACTGCAGTGAG
TAACACCCGTCCGTTTTGGCTAGGTGGCTGTTGGCAAGATTACTGACGAA
TTTTCCTTTTCAGACGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTG
CATGGATGTCAAGGAGGCTCCCAAGGGCAACTAAATTATTGTGTCTATGG
ACCCTTAACTGCTCTGTCATCCATGGTGTATTTGAAGAGCCTCGCTCGGC
TTTGCCCTTGGTCAGGTGGATGATACGGCCTTTTGGGCAGCTACGGCGCC
ACGTACTCTTATCCGTCTGTTTAGCCTTGGGTATACGCTGAGCCGGCCAT
GATGGTCACGTTAATTTGGCGGCATAAATCCTGCCTTGTCAGAGAAACAG
TTCTTGAGTTCAGCACTTTCACGATAGTTTGACGAATAAAAAATAACTAC
CTTTTCTCCCGACCCAATATACTCCAATGTCATTTGTAGACAAGATAAGC
AGCATACTAGTATAGATCCGATATCCTGAGACAGGC
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Coding sequence (CDS) from alignment at ch7:2226397..2227682-

>KJC3_010061-T1 ID=KJC3_010061-T1|Name=KJC3_010061-T1|organism=Aspergillus niger KJC3|type=CDS|length=1932bp|location=Sequence derived from alignment at ch7:2226397..2227682- (Aspergillus niger KJC3)
ACGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTGCATGGATGTCAAG
GAGGCTCCCAAGGGCAACTAACTTGACGTTACTGACGACGACTTCCTTTC
CCTGATGGACGAGAACGGTAACACCAAGGACGACGTCAAGGTCCCCGAAG
GTGAGGTGGGCGACCGTATCCGCCGCATGTTCCACGATGAGGAGAAGGAC
TGCACACCACGAGACCTTCGAGTCCGCCGACGCCGGCGCCTCGGCCACCT
TCCCCATGCAGTGCTCTGCCCTGCGCAAGAACGGTCACGTTGTTATCAAG
GGCCGCCCCTGCAAGATCGTTGAGATGTCCACCTCCAAGACTGGCAAGCA
CGGTCACGCCAAGGTCCACATCGTTGCCATCGATATCTTCACTGGCAAGA
AGCTTGAGGATCTGTCCCCCTCCACCCACAACATGGACGTCCCCAACGTC
TACCGCAAGGAATACCAGCTCATGGCTGACGAGACGTCACCATCCTGTCC
TCCATGGGCGAGCAGGTCTGCATGGATGTCAAGGAGGCTCCCAAGGGCAA
CTAACTTGACGTTACTGACGACGACTTCCTTTCCCTGATGGACGAGAACG
GTAACACCAAGGACGACGTCAAGGTCCCCGAAGGTGAGGTGGGCGACCGT
ATCCGCCGCATGTTCCACGATGAGGAGAAGGACTGCACACCACGAGACCT
TCGAGTCCGCCGACGCCGGCGCCTCGGCCACCTTCCCCATGCAGTGCTCT
GCCCTGCGCAAGAACGGTCACGTTGTTATCAAGGGCCGCCCCTGCAAGAT
CGTTGAGATGTCCACCTCCAAGACTGGCAAGCACGGTCACGCCAAGGTCC
ACATCGTTGCCATCGATATCTTCACTGGCAAGAAGCTTGAGGATCTGTCC
CCCTCCACCCACAACATGGACGTCCCCAACGTCTACCGCAAGGAATACCA
GCTCATGGCTGACGAGACGTCACCATCCTGTCCTCCATGGGCGAGCAGGT
CTGCATGGATGTCAAGGAGGCTCCCAAGGGCAACTAACTTGACGTTACTG
ACGACGACTTCCTTTCCCTGATGGACGAGAACGGTAACACCAAGGACGAC
GTCAAGGTCCCCGAAGGTGAGGTGGGCGACCGTATCCGCCGCATGTTCCA
CGATGAGGAGAAGGACTGCACACCACGAGACCTTCGAGTCCGCCGACGCC
GGCGCCTCGGCCACCTTCCCCATGCAGTGCTCTGCCCTGCGCAAGAACGG
TCACGTTGTTATCAAGGGCCGCCCCTGCAAGATCGTTGAGATGTCCACCT
CCAAGACTGGCAAGCACGGTCACGCCAAGGTCCACATCGTTGCCATCGAT
ATCTTCACTGGCAAGAAGCTTGAGGATCTGTCCCCCTCCACCCACAACAT
GGACGTCCCCAACGTCTACCGCAAGGAATACCAGCTCATGGCTGACGAGA
CGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTGCATGGATGTCAAGG
AGGCTCCCAAGGGCAACTAACTTGACGTTACTGACGACGACTTCCTTTCC
CTGATGGACGAGAACGGTAACACCAAGGACGACGTCAAGGTCCCCGAAGG
TGAGGTGGGCGACCGTATCCGCCGCATGTTCCACGATGAGGAGAAGGACT
GCACACCACGAGACCTTCGAGTCCGCCGACGCCGGCGCCTCGGCCACCTT
CCCCATGCAGTGCTCTGCCCTGCGCAAGAACGGTCACGTTGTTATCAAGG
GCCGCCCCTGCAAGATCGTTGAGATGTCCACCTCCAAGACTGGCAAGCAC
GGTCACGCCAAGGTCCACATCGTTGCCATCGATATCTTCACTGGCAAGAA
GCTTGAGGATCTGTCCCCCTCCACCCACAACATGGACGTCCCCAACGTCT
ACCGCAAGGAATACCAGCTCATGGCTGACGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0045905positive regulation of translational termination
GO:0045901positive regulation of translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0003723RNA binding
GO:0043022ribosome binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ANB1KJC3_010061Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010061-T1KJC3_010061-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010061-T1.cdsKJC3_010061-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010061-T1.utr3p1KJC3_010061-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010061-T1.exon4KJC3_010061-T1.exon4Aspergillus niger KJC3exon
KJC3_010061-T1.exon3KJC3_010061-T1.exon3Aspergillus niger KJC3exon
KJC3_010061-T1.exon2KJC3_010061-T1.exon2Aspergillus niger KJC3exon
KJC3_010061-T1.exon1KJC3_010061-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010061-T1.utr5p1KJC3_010061-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR008991
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR019769
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR001884
DBxrefInterPro:IPR020189
DBxrefPFAM:PF01287
Producttranslation initiation factor eIF5A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:2226397..2227682 -
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