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KJC3_010104-T1, KJC3_010104-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_010104-T1
Unique NameKJC3_010104-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:2348729..2350147+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_010104-T1 ID=KJC3_010104-T1|Name=KJC3_010104-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1419bp|location=Sequence derived from alignment at ch7:2348729..2350147+ (Aspergillus niger KJC3)
CCTCATCGCCTCCACCACCACCCACTATACGAACCCCCCTCAACCCAGAA
CCACACCCACAAGCCACCACCATGCCCCCCTCCCCCTGCGCCCGCTGCCA
CGACCAACGGGCAGTAATCATACGGCCCAAGAACCGGCAAAAGCTCTGCC
GCACCTGCTTCCTGCACGTCTTCGAGACCGAAGTCCACGAAACCATCACC
TCGACCTCTCTCTTCCACCCCGGCGAACGAGTCGCCATCGGCGCCAGCGG
CGGCAAAGACAGCACCGTCCTGGCCGCCGTCCTCAAGACCCTCAACGAAC
GCTACAACTATGGACTCGACCTATGCCTCCTCTCCATCGACGAAGGCATC
AAGGGTTACCGCGACGACAGTCTCGAGACCGTGAAACGCAACGCCCAACA
ATACAACATGCCGCTCGTAATCGTCAGCTACGGCGACCTGTACGGCTGGA
CAATGGACCAGGTGGTGGCGCAGGTCGGCAAAAAGGGCAACTGCACATAC
TGCGGGGTATTTCGGCGGCAGGCGCTGGATCGCGGGGCCGCGAAACTGGG
CATTAAGCATGTGGTGACGGGTCATAATGCGGATGATGTGGCGGAGACAG
TGATGATGAATTTGCTGAGAGGGGATTTGCCGCGCTTGTCGCGGGGCACG
AGTATTGTGACGGGGTCCGCCGCCAGTGATATTAAGAGGAGTAAGCCGTT
GAAGTATGCTTATGAGAAGGAGATCGTGCTGTATGCGCATCATCGCCAGT
TGGATTATTTCTCTACGGAGTGTATCTATTCGCCTGAGGCGTTTCGGGGT
AGTGCGAGGACGTTGATTAAGGATTTGGAGAAGATTAGGCCGTCGTCGAT
TTTGGATATTGTTAAGTCTGGGGAGGATATGGCGCTTCTGGTGCCCACTG
AGGTTAGGGGGAAGGGGGCTGAGGATGAGGAGGGCGGTGGTGGTGGTGGG
TGTGGGAGTCAGAATGGGCGGACGAGGGGTGGTGAGATGGCGGAGATGGA
GAGGAAGTTGAAGGAGGATGAGGCTGCCAAAGATAGGGAGATGGAGATTA
CTTCTGACAGCTTGTCTAGGAGGCAGCAGCAGCAGTTGGAGCAGATGCAG
ACGCCGGCTCAGAAGAAGGTCAAGTCGCAGGTACTGGGGACGTGTGAGCG
CTGCGGTTATATCTCCAGTCAGCGCGTGTGCAAGGCATGTACGCTTCTGG
AGGGATTGAATAAGAATCGGCCCAAGACGGCGATTGAGATGGAGATTGGT
TTGGAAGATGAGGAGAGCAGCTCGACGTTGCGCAGGCAGATGGAGAAGGT
TGAGCTGGGGGGTGTTTGAAGATATACAGTTATACCCGTTATACATATAC
CCATCATGATCACAGATTCATACCAATTAGAAGAAGTTCAACACCAATTA
TCATACCGTCACTATGCTA
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Coding sequence (CDS) from alignment at ch7:2348729..2350147+

>KJC3_010104-T1 ID=KJC3_010104-T1|Name=KJC3_010104-T1|organism=Aspergillus niger KJC3|type=CDS|length=1248bp|location=Sequence derived from alignment at ch7:2348729..2350147+ (Aspergillus niger KJC3)
ATGCCCCCCTCCCCCTGCGCCCGCTGCCACGACCAACGGGCAGTAATCAT
ACGGCCCAAGAACCGGCAAAAGCTCTGCCGCACCTGCTTCCTGCACGTCT
TCGAGACCGAAGTCCACGAAACCATCACCTCGACCTCTCTCTTCCACCCC
GGCGAACGAGTCGCCATCGGCGCCAGCGGCGGCAAAGACAGCACCGTCCT
GGCCGCCGTCCTCAAGACCCTCAACGAACGCTACAACTATGGACTCGACC
TATGCCTCCTCTCCATCGACGAAGGCATCAAGGGTTACCGCGACGACAGT
CTCGAGACCGTGAAACGCAACGCCCAACAATACAACATGCCGCTCGTAAT
CGTCAGCTACGGCGACCTGTACGGCTGGACAATGGACCAGGTGGTGGCGC
AGGTCGGCAAAAAGGGCAACTGCACATACTGCGGGGTATTTCGGCGGCAG
GCGCTGGATCGCGGGGCCGCGAAACTGGGCATTAAGCATGTGGTGACGGG
TCATAATGCGGATGATGTGGCGGAGACAGTGATGATGAATTTGCTGAGAG
GGGATTTGCCGCGCTTGTCGCGGGGCACGAGTATTGTGACGGGGTCCGCC
GCCAGTGATATTAAGAGGAGTAAGCCGTTGAAGTATGCTTATGAGAAGGA
GATCGTGCTGTATGCGCATCATCGCCAGTTGGATTATTTCTCTACGGAGT
GTATCTATTCGCCTGAGGCGTTTCGGGGTAGTGCGAGGACGTTGATTAAG
GATTTGGAGAAGATTAGGCCGTCGTCGATTTTGGATATTGTTAAGTCTGG
GGAGGATATGGCGCTTCTGGTGCCCACTGAGGTTAGGGGGAAGGGGGCTG
AGGATGAGGAGGGCGGTGGTGGTGGTGGGTGTGGGAGTCAGAATGGGCGG
ACGAGGGGTGGTGAGATGGCGGAGATGGAGAGGAAGTTGAAGGAGGATGA
GGCTGCCAAAGATAGGGAGATGGAGATTACTTCTGACAGCTTGTCTAGGA
GGCAGCAGCAGCAGTTGGAGCAGATGCAGACGCCGGCTCAGAAGAAGGTC
AAGTCGCAGGTACTGGGGACGTGTGAGCGCTGCGGTTATATCTCCAGTCA
GCGCGTGTGCAAGGCATGTACGCTTCTGGAGGGATTGAATAAGAATCGGC
CCAAGACGGCGATTGAGATGGAGATTGGTTTGGAAGATGAGGAGAGCAGC
TCGACGTTGCGCAGGCAGATGGAGAAGGTTGAGCTGGGGGGTGTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
GO:0002098tRNA wobble uridine modification
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NCS6KJC3_010104Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010104-T1.utr5p1KJC3_010104-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010104-T1.exon1KJC3_010104-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010104-T1.cdsKJC3_010104-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010104-T1.utr3p1KJC3_010104-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010104-T1KJC3_010104-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262IZ6
DBxrefInterPro:IPR000541
DBxrefInterPro:IPR032442
DBxrefInterPro:IPR011063
DBxrefPFAM:PF16503
DBxrefPFAM:PF01171
Productnucleotidyltransferase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:2348729..2350147 +
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