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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:2407377..2408785- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010123-T1 ID=KJC3_010123-T1|Name=KJC3_010123-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1409bp|location=Sequence derived from alignment at ch7:2407377..2408785- (Aspergillus niger KJC3)
CAGCAGCCGGCACACCTCTCGTCGACTAACCACTACAGCGTCAACAATCA
AAGTAAGCCCTACCCTTTTGATCTGCTCATCGACATATTGAAATTGTTAC
TGACTGAATTTACCAGATGGGTGAGTGAATTTTTCCAAAATACCTTTATT
GTCTCTCAATGGTGGATCGGCTATTGCGATATTCCCCCTGCGATCGTTGA
ACGACTTTTTACGGCATCATTTTATCTCAGCGACATCGGATAATATAAGA
CTCGATTGAAATTGGACTGGAATCGGTTGGGAACAAGAATGGTGGAAGGA
TTTTTCAACTCTGGACGACTAATGGGGGAGGACGAAATTTTCGAAGATAT
CGTGGCGCAGAAATGAAATCATCGCAAAGGACCGACGACTTGCACAACAG
TCAACAACGTTTCGCACGGAATATACGCAACGACTGAAGCCATTGCACGA
GGCAGTTCTCATCGGATGGGAGAACATGGCTGACTGGGATCCTTAGGGCG
TCTCACCGAGTACCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTAACC
CCACGCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCAACACTGTTGTC
GCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAA
GGCCAACGGTGAGATCGTCAGCATCAATGTGGTATGTGTGGCCGTTATCA
AGCGACAACTCGGCAGTGTTGGCTGACGCCTGTCTTTTTTCCCCATCCAA
TAGATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCT
CCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTG
AGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCC
CGCCACCGTGCCCGCTTCGGCTCCATCCACGTATGTTGAGATTCCTATCC
TCTTTTGCTGAGGAATATTGCGATCTAACTACGTTCCTACAGATCCTTAA
GGTTGTTGAGATCGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGC
AGCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCAC
GGCAAGAAGCTGTTCGCTTACTCTCGTCCCACTACTTTCGCGTAAATGTG
ACGTTTTGGGTTTGGGTGATCGGAGTGTGTGGATGAATGACTATGTTATG
GCCATAGCATGCACGAAGGACACGGAGCACGCGGACAGGGCGTGTTTCCT
CAACCCAGGTAATGGGACGGATGGTTTTTATGTCTCTTTAAGTCCTCTGC
AGCGACCCTTTCAAGTTATATCAAAAAATACCGGGGTATTGTTTCTGTTT
ATTCTTGGATGGGGCATAGCGTACTGTAGAGATCGTAGAACGCTTTGCGT
AGCATGGGG back to topCoding sequence (CDS) from alignment at ch7:2407377..2408785- >KJC3_010123-T1 ID=KJC3_010123-T1|Name=KJC3_010123-T1|organism=Aspergillus niger KJC3|type=CDS|length=2076bp|location=Sequence derived from alignment at ch7:2407377..2408785- (Aspergillus niger KJC3)
ATCCTTAAGGTTGTTGAGATCGAGAACGCCGACAGCATCCGCCGCCCCTA
CATCAAGCAGCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCCCCACCGTG
CTGCCCACGGCAAGAAGCTGTTCGCTTACTCTCGTCCCACTACTTTCGCG
TAAATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCT
CCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTG
AGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCC
CGCCACCGTGCCCGCTTCGGCTCCATCCACGGCGTCTCACCGAGTACCAG
GTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTA
CCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCT
GGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATC
GTCAGCATCAATGTGATGGATCCTTAAGGTTGTTGAGATCGAGAACGCCG
ACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAG
TTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTC
TCGTCCCACTACTTTCGCGTAAATCAGCGAGAAGCGCCCTACCAAGGTCA
AGAACTTCGGTATCTGGCTCCGCTACGACTCCCGCTCCGGCACCCACAAC
ATGTACAAGGAGTTCCGTGAGATGAGCCGCACCGAGGCTGTTGAGGCTCT
CTACCAGGACATGGCTGCCCGCCACCGTGCCCGCTTCGGCTCCATCCACG
GCGTCTCACCGAGTACCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTA
ACCCCACGCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCAACACTGTT
GTCGCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAA
GAAGGCCAACGGTGAGATCGTCAGCATCAATGTGATGGATCCTTAAGGTT
GTTGAGATCGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCT
CCTCTCCAAGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCA
AGAAGCTGTTCGCTTACTCTCGTCCCACTACTTTCGCGTAAATCAGCGAG
AAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTC
CCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCA
CCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCC
CGCTTCGGCTCCATCCACGGCGTCTCACCGAGTACCAGGTCATTGGGCGT
CACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTACCGCATGCGCAT
CTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCTGGTACTTCCTGA
CCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATCGTCAGCATCAAT
GTGATGGATCCTTAAGGTTGTTGAGATCGAGAACGCCGACAGCATCCGCC
GCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCCC
CACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTCTCGTCCCACTAC
TTTCGCGTAAATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTA
TCTGGCTCCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAAGGAG
TTCCGTGAGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACAT
GGCTGCCCGCCACCGTGCCCGCTTCGGCTCCATCCACGGCGTCTCACCGA
GTACCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCA
AGCTGTACCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCC
CGGTTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGG
TGAGATCGTCAGCATCAATGTGATGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010123-T1.utr3p1 | KJC3_010123-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010123-T1.utr5p1 | KJC3_010123-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR028877 |
| DBxref | InterPro:IPR021138 |
| DBxref | InterPro:IPR023573 |
| DBxref | PFAM:PF01775 |
| Product | 60S ribosomal protein L20A |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:2407377..2408785 - |
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