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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:2569618..2571445- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010176-T1 ID=KJC3_010176-T1|Name=KJC3_010176-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1828bp|location=Sequence derived from alignment at ch7:2569618..2571445- (Aspergillus niger KJC3)
CCAGTGCTCATTAGTCAGGCTTGGATGGTCTGAAGGACCGCGGAGCTATG
GCTCAGAAGCGAAAAGCCTCGGGGGACCTCCCCAACCCGAAGCGGGTACA
AAGCCGGACAACGCTGGACGATGTCGGTAAGATATGCCTAGAGACCGAGT
CTAGATTCCGGCTGATACTAAATGTCTTTCATATACTCCAGACCCAATAT
ATGAAGAAAAGCACTCCGACCCCGAGTATGACTTTTCGGATGACTCCAGT
GTCGCTAGCGGTAGTCTTCATGAGACTCCAGCTACTCCGATGTCGACTAT
CTCCGCTAGATATCCTTCAGAGCTGAAAACTCACCGCTGCCCTTTCGACG
GTTGCACGAAGGCCTTCAACCGTCCAGCACGCTTACAGGAACACTTGCGC
TCACACAACAATGAACGACTATTCCGTTGTACCCACGACGATTGCGATAA
GACGTTTCTCCGAGCATCGCATCTGAGCCATCACATCAAGAGCGCCCATA
CCGGAATCAGAGATTACGTATGCGACCGTCCGGGATGTGGGAAGAGCTTT
GTAACTGGCTCACGGCTTCGTCGACATATAGCTGCTCATGATGGAAGAGA
CAAGTACCGCTGCACAGAGTTTCCGCCTTGTGATGAGACCTTCCGAAAAC
ACTCAACGCTCCAAAAACACATCATGAGCGTGCATCTGAAACAGAAACCC
TTCTCTTGCCCGCACATCGACGCAACTACCGGCCAGAAATGTCCAATGGC
ATTTGATACCGCAGGACACCTTCGAGCTCATGAGAGTCGCATCCACACCG
AGAAACGATTCACCTGCACGGAGTGTACTCAGCAGGCCGAGCAGGCCAAC
CCATCATCATCCGAGACTCCCGCTCTCACTACAGTAACATTCCCGACTTA
CGCCCTCCTCCAAGCTCACATCCGAACTGTCCACCCCCCACAATGTCCCA
ATTGCAACCTGACCTGTTCCACGGCCCGAGAGCTCCGCCGTCATCTGGAG
GTCAGCCACGGTAACGTGAGTCTGGAAGAGCGAAAAGTCTTCCCCTGCAC
CATACCAGGTTGCGATAGCAGCTTCACCAAAAAGGGAAACCTAACTGTGC
ACATCCGCACCGTCCACCAAGGCGAGAAGCGCTTCGTCTGCGGCGAGACC
GACCTTTCCATGTCCAAGCGAGTCGTCGGCTGGACGGGAGCCGACGGCTG
CGGAAAACGCTACGGGAGTAAACTCGCCCTGGAGGAGCACATTCGCACCG
CGCACCTCGGCTTTCCCAACGCCAAGGCTGAGCGTCGACAGCGTCTTGGT
CTGAACAAGACACCGAACCCTCAGCAAACCGCTCCTTCCGCATTGGCCGC
TCTCACAGGTGAGGGTTATGCCGAAGAAACCGGCCGACAGATCACCTGCT
TCATCGAAGGCTGTCCGCACCGGTTCCACCGGAATTACGATCTGTGGGTC
CATATGGGGAGTAAGCACGGATGCACCGAGGACGAGATTCGCGATATGTT
CATGCAGCGCGCGCTATTGGCGGACAGCAATGAGCCCGTTACCGGCGATA
TGTTTGGTATCTATGGACTCGAGTTCGATAACGATGACTCCTCCGCCCCA
TATGAACCGTATATCATACATGCAGATTCAAAAGCTGGTCTATATACGAT
GGGCAGTGGTGGTGACCCCACAAATAATGAAAACAACCCCGGCGACTTCC
CCAGCAACTTTGCTGATGCCATGATTCAAGATGTCGATGTCGATGTTTCT
TCTTCTTCTAAGATACCCAGTGCTGATGATATGGCGATGATTGATCCTTT
GTTGGCGTATAATATGGCGGATTCATAG back to topCoding sequence (CDS) from alignment at ch7:2569618..2571445- >KJC3_010176-T1 ID=KJC3_010176-T1|Name=KJC3_010176-T1|organism=Aspergillus niger KJC3|type=CDS|length=3432bp|location=Sequence derived from alignment at ch7:2569618..2571445- (Aspergillus niger KJC3)
ACCCAATATATGAAGAAAAGCACTCCGACCCCGAGTATGACTTTTCGGAT
GACTCCAGTGTCGCTAGCGGTAGTCTTCATGAGACTCCAGCTACTCCGAT
GTCGACTATCTCCGCTAGATATCCTTCAGAGCTGAAAACTCACCGCTGCC
CTTTCGACGGTTGCACGAAGGCCTTCAACCGTCCAGCACGCTTACAGGAA
CACTTGCGCTCACACAACAATGAACGACTATTCCGTTGTACCCACGACGA
TTGCGATAAGACGTTTCTCCGAGCATCGCATCTGAGCCATCACATCAAGA
GCGCCCATACCGGAATCAGAGATTACGTATGCGACCGTCCGGGATGTGGG
AAGAGCTTTGTAACTGGCTCACGGCTTCGTCGACATATAGCTGCTCATGA
TGGAAGAGACAAGTACCGCTGCACAGAGTTTCCGCCTTGTGATGAGACCT
TCCGAAAACACTCAACGCTCCAAAAACACATCATGAGCGTGCATCTGAAA
CAGAAACCCTTCTCTTGCCCGCACATCGACGCAACTACCGGCCAGAAATG
TCCAATGGCATTTGATACCGCAGGACACCTTCGAGCTCATGAGAGTCGCA
TCCACACCGAGAAACGATTCACCTGCACGGAGTGTACTCAGCAGGCCGAG
CAGGCCAACCCATCATCATCCGAGACTCCCGCTCTCACTACAGTAACATT
CCCGACTTACGCCCTCCTCCAAGCTCACATCCGAACTGTCCACCCCCCAC
AATGTCCCAATTGCAACCTGACCTGTTCCACGGCCCGAGAGCTCCGCCGT
CATCTGGAGGTCAGCCACGGTAACGTGAGTCTGGAAGAGCGAAAAGTCTT
CCCCTGCACCATACCAGGTTGCGATAGCAGCTTCACCAAAAAGGGAAACC
TAACTGTGCACATCCGCACCGTCCACCAAGGCGAGAAGCGCTTCGTCTGC
GGCGAGACCGACCTTTCCATGTCCAAGCGAGTCGTCGGCTGGACGGGAGC
CGACGGCTGCGGAAAACGCTACGGGAGTAAACTCGCCCTGGAGGAGCACA
TTCGCACCGCGCACCTCGGCTTTCCCAACGCCAAGGCTGAGCGTCGACAG
CGTCTTGGTCTGAACAAGACACCGAACCCTCAGCAAACCGCTCCTTCCGC
ATTGGCCGCTCTCACAGGTGAGGGTTATGCCGAAGAAACCGGCCGACAGA
TCACCTGCTTCATCGAAGGCTGTCCGCACCGGTTCCACCGGAATTACGAT
CTGTGGGTCCATATGGGGAGTAAGCACGGATGCACCGAGGACGAGATTCG
CGATATGTTCATGCAGCGCGCGCTATTGGCGGACAGCAATGAGCCCGTTA
CCGGCGATATGTTTGGTATCTATGGACTCGAGTTCGATAACGATGACTCC
TCCGCCCCATATGAACCGTATATCATACATGCAGATTCAAAAGCTGGTCT
ATATACGATGGGCAGTGGTGGTGACCCCACAAATAATGAAAACAACCCCG
GCGACTTCCCCAGCAACTTTGCTGATGCCATGATTCAAGATGTCGATGTC
GATGTTTCTTCTTCTTCTAAGATACCCAGTGCTGATGATATGGCGATGAT
TGATCCTTTGTTGGCGTATAATATGGCGGATTCATAGATGGCTCAGAAGC
GAAAAGCCTCGGGGGACCTCCCCAACCCGAAGCGGGTACAAAGCCGGACA
ACGCTGGACGATGTCGACCCAATATATGAAGAAAAGCACTCCGACCCCGA
GTATGACTTTTCGGATGACTCCAGTGTCGCTAGCGGTAGTCTTCATGAGA
CTCCAGCTACTCCGATGTCGACTATCTCCGCTAGATATCCTTCAGAGCTG
AAAACTCACCGCTGCCCTTTCGACGGTTGCACGAAGGCCTTCAACCGTCC
AGCACGCTTACAGGAACACTTGCGCTCACACAACAATGAACGACTATTCC
GTTGTACCCACGACGATTGCGATAAGACGTTTCTCCGAGCATCGCATCTG
AGCCATCACATCAAGAGCGCCCATACCGGAATCAGAGATTACGTATGCGA
CCGTCCGGGATGTGGGAAGAGCTTTGTAACTGGCTCACGGCTTCGTCGAC
ATATAGCTGCTCATGATGGAAGAGACAAGTACCGCTGCACAGAGTTTCCG
CCTTGTGATGAGACCTTCCGAAAACACTCAACGCTCCAAAAACACATCAT
GAGCGTGCATCTGAAACAGAAACCCTTCTCTTGCCCGCACATCGACGCAA
CTACCGGCCAGAAATGTCCAATGGCATTTGATACCGCAGGACACCTTCGA
GCTCATGAGAGTCGCATCCACACCGAGAAACGATTCACCTGCACGGAGTG
TACTCAGCAGGCCGAGCAGGCCAACCCATCATCATCCGAGACTCCCGCTC
TCACTACAGTAACATTCCCGACTTACGCCCTCCTCCAAGCTCACATCCGA
ACTGTCCACCCCCCACAATGTCCCAATTGCAACCTGACCTGTTCCACGGC
CCGAGAGCTCCGCCGTCATCTGGAGGTCAGCCACGGTAACGTGAGTCTGG
AAGAGCGAAAAGTCTTCCCCTGCACCATACCAGGTTGCGATAGCAGCTTC
ACCAAAAAGGGAAACCTAACTGTGCACATCCGCACCGTCCACCAAGGCGA
GAAGCGCTTCGTCTGCGGCGAGACCGACCTTTCCATGTCCAAGCGAGTCG
TCGGCTGGACGGGAGCCGACGGCTGCGGAAAACGCTACGGGAGTAAACTC
GCCCTGGAGGAGCACATTCGCACCGCGCACCTCGGCTTTCCCAACGCCAA
GGCTGAGCGTCGACAGCGTCTTGGTCTGAACAAGACACCGAACCCTCAGC
AAACCGCTCCTTCCGCATTGGCCGCTCTCACAGGTGAGGGTTATGCCGAA
GAAACCGGCCGACAGATCACCTGCTTCATCGAAGGCTGTCCGCACCGGTT
CCACCGGAATTACGATCTGTGGGTCCATATGGGGAGTAAGCACGGATGCA
CCGAGGACGAGATTCGCGATATGTTCATGCAGCGCGCGCTATTGGCGGAC
AGCAATGAGCCCGTTACCGGCGATATGTTTGGTATCTATGGACTCGAGTT
CGATAACGATGACTCCTCCGCCCCATATGAACCGTATATCATACATGCAG
ATTCAAAAGCTGGTCTATATACGATGGGCAGTGGTGGTGACCCCACAAAT
AATGAAAACAACCCCGGCGACTTCCCCAGCAACTTTGCTGATGCCATGAT
TCAAGATGTCGATGTCGATGTTTCTTCTTCTTCTAAGATACCCAGTGCTG
ATGATATGGCGATGATTGATCCTTTGTTGGCGTATAATATGGCGGATTCA
TAGATGGCTCAGAAGCGAAAAGCCTCGGGGGACCTCCCCAACCCGAAGCG
GGTACAAAGCCGGACAACGCTGGACGATGTCG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010176-T1.utr5p1 | KJC3_010176-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036236 |
| DBxref | InterPro:IPR013087 |
| DBxref | PFAM:PF00096 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:2569618..2571445 - |
|
