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KJC3_010177-T1, KJC3_010177-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_010177-T1
Unique NameKJC3_010177-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:2571746..2572499+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_010177-T1 ID=KJC3_010177-T1|Name=KJC3_010177-T1|organism=Aspergillus niger KJC3|type=mRNA|length=754bp|location=Sequence derived from alignment at ch7:2571746..2572499+ (Aspergillus niger KJC3)
ATGTCTGACTACGGAGACCACGACGCTGAGGAAACGTAAGAGACCGGTAC
CCCATGAGAGCTTGAGCTTGCGCAGGTCAATGCTGCGCGTCTGCGTTACA
TATCGATGGCCGTCATTTTTGCTAGGTGGAAATTCCGATGTTCTGACTAG
GATTGTCTTATAGTTACGACTACGAGCCGGAGCAGGAGTACGATGACAAC
GAGCCCGAGGACTTCTTAAACCCCGAGGATGTCGACGTCGCAGAAGGAGG
AGCCGATGAATATGGCGAAGGCTCATACGCGCCTGCTGTCAACGGAAACC
ACATTGTCGCTTCAGGCGACCCGAATGCGGGGTATGCGGGCAAGGTCATG
GAACAGACACGGGAGAAGAAGGTCCCGAACGACCAGCGCCAGACAACTCC
ATACATGACCAAGTACGAGCGCGCGCGTGTCCTGGGTACTCGGGCGCTGC
AGATCAGGTTCGTCTCGGCAATCGATGCAGCATCAAGCATGGGCTGAGGA
GCGCAATCGGATGCTGACCATGTTTTTAGTATGAACGCCCCGGTGCTCGT
CGATCTTGAGGGCGAGACGGATCCTCTACAGATCGCCATCAAGGAGTTGA
ACCAGAAGAAGATCCCACTGATTGTGCGGAGATATCTTCCCGACGGATGG
TAAGCGGACCTTCTCCATGTGTGTTTAACGATTTGACGTATTCGATCTAA
TCACTATTTCTGTGGTACAGGTACGAGGACTGGACTTGCGAAGAATTACT
CTAG
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Coding sequence (CDS) from alignment at ch7:2571746..2572499+

>KJC3_010177-T1 ID=KJC3_010177-T1|Name=KJC3_010177-T1|organism=Aspergillus niger KJC3|type=CDS|length=1932bp|location=Sequence derived from alignment at ch7:2571746..2572499+ (Aspergillus niger KJC3)
ATGTCTGACTACGGAGACCACGACGCTGAGGAAACTTACGACTACGAGCC
GGAGCAGGAGTACGATGACAACGAGCCCGAGGACTTCTTAAACCCCGAGG
ATGTCGACGTCGCAGAAGGAGGAGCCGATGAATATGGCGAAGGCTCATAC
GCGCCTGCTGTCAACGGAAACCACATTGTCGCTTCAGGCGACCCGAATGC
GGGGTATGCGGGCAAGGTCATGGAACAGACACGGGAGAAGAAGGTCCCGA
ACGACCAGCGCCAGACAACTCCATACATGACCAAGTACGAGCGCGCGCGT
GTCCTGGGTACTCGGGCGCTGCAGATCAGTATGAACGCCCCGGTGCTCGT
CGATCTTGAGGGCGAGACGGATCCTCTACAGATCGCCATCAAGGAGTTGA
ACCAGAAGAAGATCCCACTGATTGTGCGGAGATATCTTCCCGACGGATGG
TACGAGGACTGGACTTGCGAAGAATTACTCTAGATGTCTGACTACGGAGA
CCACGACGCTGAGGAAACTTACGACTACGAGCCGGAGCAGGAGTACGATG
ACAACGAGCCCGAGGACTTCTTAAACCCCGAGGATGTCGACGTCGCAGAA
GGAGGAGCCGATGAATATGGCGAAGGCTCATACGCGCCTGCTGTCAACGG
AAACCACATTGTCGCTTCAGGCGACCCGAATGCGGGGTATGCGGGCAAGG
TCATGGAACAGACACGGGAGAAGAAGGTCCCGAACGACCAGCGCCAGACA
ACTCCATACATGACCAAGTACGAGCGCGCGCGTGTCCTGGGTACTCGGGC
GCTGCAGATCAGTATGAACGCCCCGGTGCTCGTCGATCTTGAGGGCGAGA
CGGATCCTCTACAGATCGCCATCAAGGAGTTGAACCAGAAGAAGATCCCA
CTGATTGTGCGGAGATATCTTCCCGACGGATGGTACGAGGACTGGACTTG
CGAAGAATTACTCTAGATGTCTGACTACGGAGACCACGACGCTGAGGAAA
CTTACGACTACGAGCCGGAGCAGGAGTACGATGACAACGAGCCCGAGGAC
TTCTTAAACCCCGAGGATGTCGACGTCGCAGAAGGAGGAGCCGATGAATA
TGGCGAAGGCTCATACGCGCCTGCTGTCAACGGAAACCACATTGTCGCTT
CAGGCGACCCGAATGCGGGGTATGCGGGCAAGGTCATGGAACAGACACGG
GAGAAGAAGGTCCCGAACGACCAGCGCCAGACAACTCCATACATGACCAA
GTACGAGCGCGCGCGTGTCCTGGGTACTCGGGCGCTGCAGATCAGTATGA
ACGCCCCGGTGCTCGTCGATCTTGAGGGCGAGACGGATCCTCTACAGATC
GCCATCAAGGAGTTGAACCAGAAGAAGATCCCACTGATTGTGCGGAGATA
TCTTCCCGACGGATGGTACGAGGACTGGACTTGCGAAGAATTACTCTAGA
TGTCTGACTACGGAGACCACGACGCTGAGGAAACTTACGACTACGAGCCG
GAGCAGGAGTACGATGACAACGAGCCCGAGGACTTCTTAAACCCCGAGGA
TGTCGACGTCGCAGAAGGAGGAGCCGATGAATATGGCGAAGGCTCATACG
CGCCTGCTGTCAACGGAAACCACATTGTCGCTTCAGGCGACCCGAATGCG
GGGTATGCGGGCAAGGTCATGGAACAGACACGGGAGAAGAAGGTCCCGAA
CGACCAGCGCCAGACAACTCCATACATGACCAAGTACGAGCGCGCGCGTG
TCCTGGGTACTCGGGCGCTGCAGATCAGTATGAACGCCCCGGTGCTCGTC
GATCTTGAGGGCGAGACGGATCCTCTACAGATCGCCATCAAGGAGTTGAA
CCAGAAGAAGATCCCACTGATTGTGCGGAGATATCTTCCCGACGGATGGT
ACGAGGACTGGACTTGCGAAGAATTACTCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005665RNA polymerase II, core complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPO26KJC3_010177Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010177-T1.exon1KJC3_010177-T1.exon1Aspergillus niger KJC3exon
KJC3_010177-T1.exon2KJC3_010177-T1.exon2Aspergillus niger KJC3exon
KJC3_010177-T1.exon3KJC3_010177-T1.exon3Aspergillus niger KJC3exon
KJC3_010177-T1.exon4KJC3_010177-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010177-T1.cdsKJC3_010177-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010177-T1KJC3_010177-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265552
DBxrefInterPro:IPR036161
DBxrefInterPro:IPR020708
DBxrefInterPro:IPR012293
DBxrefInterPro:IPR028363
DBxrefInterPro:IPR006111
DBxrefInterPro:IPR006110
DBxrefPFAM:PF01192
Product and III
Product II
Productsubunit common to RNA polymerases I
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:2571746..2572499 +
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