You are here

Home

KJC3_010262-T1, KJC3_010262-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_010262-T1
Unique NameKJC3_010262-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:2858725..2860517+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_010262-T1 ID=KJC3_010262-T1|Name=KJC3_010262-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1793bp|location=Sequence derived from alignment at ch7:2858725..2860517+ (Aspergillus niger KJC3)
CTATATATCGCAACGTCTCTGCTCCAGCGCGAAAAATTAGACGTGATCCG
CAGCAATATCGGCCACGGTCTTGCTCTACGATCAGCGCTATCAATCGTTG
CGCTCCTCCTGCAGTTTCTCTTCCCTCCGCTGCCAACAAACAGCTCTCTA
GACCACCCAAGCCAATATAACGATCCTAAATTCAACGCTAACACCAAGGG
CATTAGCTTCTTTTATCTTTTTGACTGGCTCTCCCAATCCTTATACCTTT
ATTGGTTTGTCGTAGCTTACTCCCGCTTCATCACCCTCTGGGCCGGCCAT
GTCGTCGAGGGGACCTTGATCTGCGGACAAACGGAGTGGGCGACTACGCA
GCGCCAAAAGTACAGGCGACAACACATTACTGGCAGCCAGAAGATCTTAT
GGACGTACCGAAACACTCAGCCAAGTCTTACAAAATGTCCGACAAGATTA
GCTTATTACCTCTGGAACTCATCCTTCACATACTCTCCTACCTTCCCTTC
GAGTCCTTGCTTGCCTTCGGCGAAACATCTCGCACCAACTATGAGTCCCA
TACCCTCTGTCTTGAGTGTCTACGACTAGGAGTTTTTGAGAAGCGCATCC
ACTCTGTGATTTCCTTACTCCAGGCTGGCTGGACCACCCCGGATCAAATG
GCACAGATTTCCAGTCACAACAAACAAGCGAACGACTACACAATATCCAT
CATCCAACCTGCTATGAGCCGGCTTGCAAGCGACCTGGACAGCAAGCCTC
TGCTAAAAATCAAAAGCTTGAAAAGACGGTGCCCAGCACTACTCGAAAAA
TCCCGGACATTGGAGCAGATGACTCGGGAGCAGAACAGGGTCTTTGCCCA
AGTGGTGAATCGGTATGGTCGAGGCCTTAGGAAACTGGAGTTCATGGCGT
ATGATCTTGACAGCGAGGGTGCCATGGCTCTAGCTTCTAAATGCCAGAAT
ATATTGCATCATCTAGCATTGCGCTTCGAGCATCCACATATTCGGGATGG
CCCCATCAGACCCAGCACTTGGATGAATCCTGCCCCAGGAAGTACGGCAT
GGAACATGTTCCTCGGTATAGGACGGTACCCACAATTTGGCCTTTGCGGG
CTACAGACTTTGATCCTGGAGCGGGCGGGCATCACTCCGTGGCAGTTGAC
CATGCTTGTGAAGAAAAACCCCAAGCTGACTGTTCTCAAACTGAGAACAT
GTCGCGGTGTGCAGCCCGAGTTTCTAAACTGGCTAGGTGGAGTGTACTAC
GAGCCAGAAGAGCTAGGGAGCGATGAGGACAGTCTAGCTCCTGGTCGGAA
TCTGAAAGTGCTGTGGTTGGAAAATTGCCACCAGATACTTGCCCATCCCA
TCGAAAACTATGAACACCTGCCCGACGAAATCTGCGACTTTGGTCTTGGA
TGGGTTAGAGGTCTGACTAGCTTGCGTGTAAGTGGAATCTTGTCCCGTGA
TGCCTGCATTCAACCAGCTGACAGAGTTATCTTGACAGTCTCTATCTTTC
AGCGAGAGCGCGAATATCCCGCCCGAATACATTGACAGAGCTAATAGTGT
GCTTTGGAAGATACCAGAAGTCATCTTGCCTTATTCGGGTCATGGGGACA
AAGCCCCCATCGAAGTTGATCCTGGATTGTTGTAGTCCACACCGGTTGGC
TTATTTTTCTTTTTTTCTTGGAGGGTTGGAGGCATCTTGGTGTTGCTTCT
TGCAGGTGACTGGAGAGGGATTCTCGTTTACTGTGTTTTTGAAGATAGAC
CATTATGTGCAAATACCTGCATGTCTGTGCTGATGCTACAAAA
back to top

Coding sequence (CDS) from alignment at ch7:2858725..2860517+

>KJC3_010262-T1 ID=KJC3_010262-T1|Name=KJC3_010262-T1|organism=Aspergillus niger KJC3|type=CDS|length=2352bp|location=Sequence derived from alignment at ch7:2858725..2860517+ (Aspergillus niger KJC3)
ATGGACGTACCGAAACACTCAGCCAAGTCTTACAAAATGTCCGACAAGAT
TAGCTTATTACCTCTGGAACTCATCCTTCACATACTCTCCTACCTTCCCT
TCGAGTCCTTGCTTGCCTTCGGCGAAACATCTCGCACCAACTATGAGTCC
CATACCCTCTGTCTTGAGTGTCTACGACTAGGAGTTTTTGAGAAGCGCAT
CCACTCTGTGATTTCCTTACTCCAGGCTGGCTGGACCACCCCGGATCAAA
TGGCACAGATTTCCAGTCACAACAAACAAGCGAACGACTACACAATATCC
ATCATCCAACCTGCTATGAGCCGGCTTGCAAGCGACCTGGACAGCAAGCC
TCTGCTAAAAATCAAAAGCTTGAAAAGACGGTGCCCAGCACTACTCGAAA
AATCCCGGACATTGGAGCAGATGACTCGGGAGCAGAACAGGGTCTTTGCC
CAAGTGGTGAATCGGTATGGTCGAGGCCTTAGGAAACTGGAGTTCATGGC
GTATGATCTTGACAGCGAGGGTGCCATGGCTCTAGCTTCTAAATGCCAGA
ATATATTGCATCATCTAGCATTGCGCTTCGAGCATCCACATATTCGGGAT
GGCCCCATCAGACCCAGCACTTGGATGAATCCTGCCCCAGGAAGTACGGC
ATGGAACATGTTCCTCGGTATAGGACGGTACCCACAATTTGGCCTTTGCG
GGCTACAGACTTTGATCCTGGAGCGGGCGGGCATCACTCCGTGGCAGTTG
ACCATGCTTGTGAAGAAAAACCCCAAGCTGACTGTTCTCAAACTGAGAAC
ATGTCGCGGTGTGCAGCCCGAGTTTCTAAACTGGCTAGGTGGAGTGTACT
ACGAGCCAGAAGAGCTAGGGAGCGATGAGGACAGTCTAGCTCCTGGTCGG
AATCTGAAAGTGCTGTGGTTGGAAAATTGCCACCAGATACTTGCCCATCC
CATCGAAAACTATGAACACCTGCCCGACGAAATCTGCGACTTTGGTCTTG
GATGGGTTAGAGGTCTGACTAGCTTGCGTTCTCTATCTTTCAGCGAGAGC
GCGAATATCCCGCCCGAATACATTGACAGAGCTAATAGTGTGCTTTGGAA
GATACCAGAAGTCATCTTGCCTTATTCGGGTCATGGGGACAAAGCCCCCA
TCGAAGTTGATCCTGGATTGTTGTAGATGGACGTACCGAAACACTCAGCC
AAGTCTTACAAAATGTCCGACAAGATTAGCTTATTACCTCTGGAACTCAT
CCTTCACATACTCTCCTACCTTCCCTTCGAGTCCTTGCTTGCCTTCGGCG
AAACATCTCGCACCAACTATGAGTCCCATACCCTCTGTCTTGAGTGTCTA
CGACTAGGAGTTTTTGAGAAGCGCATCCACTCTGTGATTTCCTTACTCCA
GGCTGGCTGGACCACCCCGGATCAAATGGCACAGATTTCCAGTCACAACA
AACAAGCGAACGACTACACAATATCCATCATCCAACCTGCTATGAGCCGG
CTTGCAAGCGACCTGGACAGCAAGCCTCTGCTAAAAATCAAAAGCTTGAA
AAGACGGTGCCCAGCACTACTCGAAAAATCCCGGACATTGGAGCAGATGA
CTCGGGAGCAGAACAGGGTCTTTGCCCAAGTGGTGAATCGGTATGGTCGA
GGCCTTAGGAAACTGGAGTTCATGGCGTATGATCTTGACAGCGAGGGTGC
CATGGCTCTAGCTTCTAAATGCCAGAATATATTGCATCATCTAGCATTGC
GCTTCGAGCATCCACATATTCGGGATGGCCCCATCAGACCCAGCACTTGG
ATGAATCCTGCCCCAGGAAGTACGGCATGGAACATGTTCCTCGGTATAGG
ACGGTACCCACAATTTGGCCTTTGCGGGCTACAGACTTTGATCCTGGAGC
GGGCGGGCATCACTCCGTGGCAGTTGACCATGCTTGTGAAGAAAAACCCC
AAGCTGACTGTTCTCAAACTGAGAACATGTCGCGGTGTGCAGCCCGAGTT
TCTAAACTGGCTAGGTGGAGTGTACTACGAGCCAGAAGAGCTAGGGAGCG
ATGAGGACAGTCTAGCTCCTGGTCGGAATCTGAAAGTGCTGTGGTTGGAA
AATTGCCACCAGATACTTGCCCATCCCATCGAAAACTATGAACACCTGCC
CGACGAAATCTGCGACTTTGGTCTTGGATGGGTTAGAGGTCTGACTAGCT
TGCGTTCTCTATCTTTCAGCGAGAGCGCGAATATCCCGCCCGAATACATT
GACAGAGCTAATAGTGTGCTTTGGAAGATACCAGAAGTCATCTTGCCTTA
TTCGGGTCATGGGGACAAAGCCCCCATCGAAGTTGATCCTGGATTGTTGT
AG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_010262KJC3_010262Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010262-T1.utr5p1KJC3_010262-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010262-T1.exon1KJC3_010262-T1.exon1Aspergillus niger KJC3exon
KJC3_010262-T1.exon2KJC3_010262-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010262-T1.cdsKJC3_010262-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010262-T1.utr3p1KJC3_010262-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_010262-T1KJC3_010262-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036047
DBxrefInterPro:IPR032675
DBxrefInterPro:IPR001810
DBxrefPFAM:PF00646
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:2858725..2860517 +
Powered by Drupal