|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:4193389..4194790+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010726-T1 ID=KJC3_010726-T1|Name=KJC3_010726-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1402bp|location=Sequence derived from alignment at ch7:4193389..4194790+ (Aspergillus niger KJC3)
CCAATTTAAATCAACTCTATCTATCTAATCGCCACAACCACCACTATACC
TCTATTGCAATTATAACTACTACGCCAACATGGACTTCGCATCGTTGATG
TCCAAAGAGATCTCCAAAGCAAAACCCAAAGCAGACTCCCAAGATTCCTC
CAAGCCCAAATACACCCGGCGCGGCGATCTCGAAGCCGCCCGCATCGCAG
CCTACAATGAAGAACAAGAGCGCCTAGCCCGCGAACGCGAAGAGCGTAAC
GCCCAGAAACGCAAGCTCGAAGACGAAGAAGCCGACCGCCGTCGCGAGCG
GGAAGAGAAGAAGCGCAGACTGGCCGAGGAGTCGCGCAAGAAGCGCGAAG
AGGAAGAAGCTGCTCGCGAACGAGAGCGCAGGAAGAGACTCGGCTTGCCG
GAACTGCCGCCTACGGAGTCTGGAGATGATAAAGAGGGTGAGGGTAAGGA
AGGTGGCGAGGAGGATATACCGGAGGAGGAGCTCTTGAAGAAGTTACGGG
AGATGGAGGAGCCGGCGATATTGTTTGGGGAGACGCATAAGGGCCGGCTG
AGGCGGTATAGGAGGCTGTTGCAGCGGTCGTTGACGCCGCAGCCGCAGTT
GTCGGATGGGCCGATCCCGACAACGCTGGAGCTGGTGCCGGAGGTGGACA
TGAAGATTCCGGAGACGGCGCCGAAGGATCTGGAGGGGAAGAAGTTCTTG
TTTCGCCAGCTGGCGTCGTACTTCAATATGGTGTTGCGGGAGTGGGAGTT
GGCGTTGGCGAAGCGAGATGCATCGGTCAAGCTGAGCTTGCAGGGGAAAC
AGGCGTATAATGCGATGGTGCAGTCGCGGGAGAACATGAAGCCGTTGTTT
CGCAAGTTCGAGAAGGTTGATATTGATGATGGGGTGCTCGACCATGTGGT
TGAGATTGTGTCCAAGGCGCAGCAACGGCGGTATGTCGATGCTAATGATG
CCTACCTTCGGTTGAGTATTGGAAAAGCGTACGTATCTTCTTTCTGTTCT
GAGGCTTTGTTCCTGGCTAATGTTTTGCAGTGCTTGGCCTATCGGTGTGA
CCATGGTTGGTATTCACGAACGTTCCGCACGAGAGAAGCTGCATCAGAGC
GATCAGCAGGCGCATATTCTGAGTGACGAGATTACGCGCAAGTACTTGCA
GAGCATCAAGCGGTGCCTCAGCTTTGCGCAGACGCGTTGGCCCCCGGATG
ACCAGTTGCAGATCATGGGCTAGCCATGATGTACGATGACATTACTTATA
CCCATTACCTGAACCAAGATCAAGTTACTATCTCTTGTATACACTACTCA
GCGGGCATGCCAGCAGTGTTCTCACACTGTTTGGGACCACGTGCTATAGC
ATATCGTGCTCATAAAACAAATTTATAGCTGCTACTACTAGCTGAATAAG
GC back to topCoding sequence (CDS) from alignment at ch7:4193389..4194790+ >KJC3_010726-T1 ID=KJC3_010726-T1|Name=KJC3_010726-T1|organism=Aspergillus niger KJC3|type=CDS|length=2184bp|location=Sequence derived from alignment at ch7:4193389..4194790+ (Aspergillus niger KJC3)
ATGGACTTCGCATCGTTGATGTCCAAAGAGATCTCCAAAGCAAAACCCAA
AGCAGACTCCCAAGATTCCTCCAAGCCCAAATACACCCGGCGCGGCGATC
TCGAAGCCGCCCGCATCGCAGCCTACAATGAAGAACAAGAGCGCCTAGCC
CGCGAACGCGAAGAGCGTAACGCCCAGAAACGCAAGCTCGAAGACGAAGA
AGCCGACCGCCGTCGCGAGCGGGAAGAGAAGAAGCGCAGACTGGCCGAGG
AGTCGCGCAAGAAGCGCGAAGAGGAAGAAGCTGCTCGCGAACGAGAGCGC
AGGAAGAGACTCGGCTTGCCGGAACTGCCGCCTACGGAGTCTGGAGATGA
TAAAGAGGGTGAGGGTAAGGAAGGTGGCGAGGAGGATATACCGGAGGAGG
AGCTCTTGAAGAAGTTACGGGAGATGGAGGAGCCGGCGATATTGTTTGGG
GAGACGCATAAGGGCCGGCTGAGGCGGTATAGGAGGCTGTTGCAGCGGTC
GTTGACGCCGCAGCCGCAGTTGTCGGATGGGCCGATCCCGACAACGCTGG
AGCTGGTGCCGGAGGTGGACATGAAGATTCCGGAGACGGCGCCGAAGGAT
CTGGAGGGGAAGAAGTTCTTGTTTCGCCAGCTGGCGTCGTACTTCAATAT
GGTGTTGCGGGAGTGGGAGTTGGCGTTGGCGAAGCGAGATGCATCGGTCA
AGCTGAGCTTGCAGGGGAAACAGGCGTATAATGCGATGGTGCAGTCGCGG
GAGAACATGAAGCCGTTGTTTCGCAAGTTCGAGAAGGTTGATATTGATGA
TGGGGTGCTCGACCATGTGGTTGAGATTGTGTCCAAGGCGCAGCAACGGC
GGTATGTCGATGCTAATGATGCCTACCTTCGGTTGAGTATTGGAAAAGCT
GCTTGGCCTATCGGTGTGACCATGGTTGGTATTCACGAACGTTCCGCACG
AGAGAAGCTGCATCAGAGCGATCAGCAGGCGCATATTCTGAGTGACGAGA
TTACGCGCAAGTACTTGCAGAGCATCAAGCGGTGCCTCAGCTTTGCGCAG
ACGCGTTGGCCCCCGGATGACCAGTTGCAGATCATGGGCTAGATGGACTT
CGCATCGTTGATGTCCAAAGAGATCTCCAAAGCAAAACCCAAAGCAGACT
CCCAAGATTCCTCCAAGCCCAAATACACCCGGCGCGGCGATCTCGAAGCC
GCCCGCATCGCAGCCTACAATGAAGAACAAGAGCGCCTAGCCCGCGAACG
CGAAGAGCGTAACGCCCAGAAACGCAAGCTCGAAGACGAAGAAGCCGACC
GCCGTCGCGAGCGGGAAGAGAAGAAGCGCAGACTGGCCGAGGAGTCGCGC
AAGAAGCGCGAAGAGGAAGAAGCTGCTCGCGAACGAGAGCGCAGGAAGAG
ACTCGGCTTGCCGGAACTGCCGCCTACGGAGTCTGGAGATGATAAAGAGG
GTGAGGGTAAGGAAGGTGGCGAGGAGGATATACCGGAGGAGGAGCTCTTG
AAGAAGTTACGGGAGATGGAGGAGCCGGCGATATTGTTTGGGGAGACGCA
TAAGGGCCGGCTGAGGCGGTATAGGAGGCTGTTGCAGCGGTCGTTGACGC
CGCAGCCGCAGTTGTCGGATGGGCCGATCCCGACAACGCTGGAGCTGGTG
CCGGAGGTGGACATGAAGATTCCGGAGACGGCGCCGAAGGATCTGGAGGG
GAAGAAGTTCTTGTTTCGCCAGCTGGCGTCGTACTTCAATATGGTGTTGC
GGGAGTGGGAGTTGGCGTTGGCGAAGCGAGATGCATCGGTCAAGCTGAGC
TTGCAGGGGAAACAGGCGTATAATGCGATGGTGCAGTCGCGGGAGAACAT
GAAGCCGTTGTTTCGCAAGTTCGAGAAGGTTGATATTGATGATGGGGTGC
TCGACCATGTGGTTGAGATTGTGTCCAAGGCGCAGCAACGGCGGTATGTC
GATGCTAATGATGCCTACCTTCGGTTGAGTATTGGAAAAGCTGCTTGGCC
TATCGGTGTGACCATGGTTGGTATTCACGAACGTTCCGCACGAGAGAAGC
TGCATCAGAGCGATCAGCAGGCGCATATTCTGAGTGACGAGATTACGCGC
AAGTACTTGCAGAGCATCAAGCGGTGCCTCAGCTTTGCGCAGACGCGTTG
GCCCCCGGATGACCAGTTGCAGATCATGGGCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005681 | spliceosomal complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008380 | RNA splicing |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010726-T1.utr5p1 | KJC3_010726-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010726-T1.utr3p1 | KJC3_010726-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926420U |
| DBxref | InterPro:IPR014906 |
| DBxref | InterPro:IPR004098 |
| DBxref | InterPro:IPR036285 |
| DBxref | PFAM:PF08799 |
| DBxref | PFAM:PF02840 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:4193389..4194790 + |
|
